TCONS_00007696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007696
Unique NameTCONS_00007696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007696 ID=TCONS_00007696|Name=TCONS_00007696|organism=Clytia hemisphaerica|type=transcript|length=557bp
CCCACGGACTCTATGCTACATTTGGAGGAAAAAAACTCATGCATGAATTA
TGTTCATACAGTAAGCAGCTTTCAGAATATTTTTGATTTGCAAGATTGCC
AAATCGGAAAAATATCTTGCCAACATGCTCCTTATAAATTGAAGAATCCA
TTCGTGGGATATGAATAACTTGTAATGGTAAGATAAGTAGTAATGGATTT
CGCTCGATTATTGAACGTTCTTCTGTTCATGACCGTGGCTGATTCTCAAA
TCCTTACCGCTTCAAATGACCATCATCCAGAACTACCAAAAGTAATATTT
CATCCCATTAGTCAATACAAACCACGTGGTACTGTCAAAATATCCTGCAA
AACCAATGATGAGAGATCGGAAAGCATTCAATACACGCGGGATGGAGTGC
CGCTCTCTCCCACATCTGACCCACGGATTACGTATGGAACTGATAACACT
GTGACGATTACTGGTCTCGATTATAGACAAGACGATGGAGAGTATAGATG
TATTGTTACAAATAATCGAGGCAAAATACAAAGCTTGAAGAAAGTCCTGA
AAGTTAA
Run BLAST on NCBI

protein sequence of TCONS_00007696-protein

>TCONS_00007696-protein ID=TCONS_00007696-protein|Name=TCONS_00007696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MDFARLLNVLLFMTVADSQILTASNDHHPELPKVIFHPISQYKPRGTVKI
SCKTNDERSESIQYTRDGVPLSPTSDPRITYGTDNTVTITGLDYRQDDGE
YRCIVTNNRGKIQSLKKVLKV
Run BLAST on NCBI

transcript from alignment at sc0000079:103194..104346+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007696 ID=TCONS_00007696|Name=TCONS_00007696|organism=Clytia hemisphaerica|type=transcript|length=1153bp|location=Sequence derived from alignment at sc0000079:103194..104346+ (Clytia hemisphaerica)
CCCACGGACTCTATGCTACATTTGGAGGAAAAAAACTCATGCATGAATTA
TGTTCATACAGTAAGCAGCTTTCAGAATATTTTTGATTTGCAAGATTGCC
AAATCGGAAAAATATCTTGCCAACATGCTCCTTATAAATTGAAGAATCCA
TTCGTGGGATATGAATAACTTGTAATGGTAAGATAAGTAGTAATGGATTT
CGCTCGATTATTGAACGTTCTTCTGTTCATGACCGTGGCTGATTCTCAAA
TCCTTACCGGTAAGTGTTTTTACTAATATCTCCTTAAACCGTTTTATATC
CAGCAGTAGCTGTAGCAGTATCAATATATATTCATAGCTGTTGATGGAGT
CGCTAGTAAGGGTGTCGAATGCTGAGATAGAACACCACATCTACCCCCAG
TTGTCAGTAACTTACCATTTTGATCAGACTATCCAATCCAAGGTTTCACC
TGCTGATAGAGTGGGGGCTGGGGAACGAACCCACACTCATTTTATTCTAA
AGTattgctctaccgactgagctacaaACTTacacaccaaaaatatttta
atttgtaTTCAATATGTGGAGTAGAATCGATTGAAAACCTTATCTTGAAC
TTTTACACAACGTAGAAAGAGCGCTAATATCAACACTCTTTCCACTCTTT
CTTGAATCTTAATGCGCGATAATCAACAAATGTTTATTTGCCAGTTCAGT
GTGATTTCGCCTTCGATAAAATTCcaattttccttggaaatcTTTTAACA
GAGCTTTAACTGTAGCACCTGTAGGGGAAAGCCTTAGAGCCAGTCTTAAC
AAAACGTAGTTCTATTTGAAGTACTTTTAACACGTTCTATATTTTCCTTT
CAAAGCTTCAAATGACCATCATCCAGAACTACCAAAAGTAATATTTCATC
CCATTAGTCAATACAAACCACGTGGTACTGTCAAAATATCCTGCAAAACC
AATGATGAGAGATCGGAAAGCATTCAATACACGCGGGATGGAGTGCCGCT
CTCTCCCACATCTGACCCACGGATTACGTATGGAACTGATAACACTGTGA
CGATTACTGGTCTCGATTATAGACAAGACGATGGAGAGTATAGATGTATT
GTTACAAATAATCGAGGCAAAATACAAAGCTTGAAGAAAGTCCTGAAAGT
TAA

Coding sequence (CDS) from alignment at sc0000079:103194..104346+

>TCONS_00007696 ID=TCONS_00007696|Name=TCONS_00007696|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000079:103194..104346+ (Clytia hemisphaerica)
ATGGATTTCGCTCGATTATTGAACGTTCTTCTGTTCATGACCGTGGCTGA
TTCTCAAATCCTTACCGCTTCAAATGACCATCATCCAGAACTACCAAAAG
TAATATTTCATCCCATTAGTCAATACAAACCACGTGGTACTGTCAAAATA
TCCTGCAAAACCAATGATGAGAGATCGGAAAGCATTCAATACACGCGGGA
TGGAGTGCCGCTCTCTCCCACATCTGACCCACGGATTACGTATGGAACTG
ATAACACTGTGACGATTACTGGTCTCGATTATAGACAAGACGATGGAGAG
TATAGATGTATTGTTACAAATAATCGAGGCAAAATACAAAGCTTGAAGAA
AGTCCTGAAAGTTATGGATTTCGCTCGATTATTGAACGTTCTTCTGTTCA
TGACCGTGGCTGATTCTCAAATCCTTACCGCTTCAAATGACCATCATCCA
GAACTACCAAAAGTAATATTTCATCCCATTAGTCAATACAAACCACGTGG
TACTGTCAAAATATCCTGCAAAACCAATGATGAGAGATCGGAAAGCATTC
AATACACGCGGGATGGAGTGCCGCTCTCTCCCACATCTGACCCACGGATT
ACGTATGGAACTGATAACACTGTGACGATTACTGGTCTCGATTATAGACA
AGACGATGGAGAGTATAGATGTATTGTTACAAATAATCGAGGCAAAATAC
AAAGCTTGAAGAAAGTCCTGAAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004363XLOC_004363Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007696-proteinTCONS_00007696-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007696-exon-sc0000079-1491911889:103194..103452TCONS_00007696-exon-sc0000079-1491911889:103194..103452Clytia hemisphaericaexon
TCONS_00007696-exon-sc0000079-1510915933:103194..103452TCONS_00007696-exon-sc0000079-1510915933:103194..103452Clytia hemisphaericaexon
TCONS_00007696-exon-sc0000079-1575043694:103194..103452TCONS_00007696-exon-sc0000079-1575043694:103194..103452Clytia hemisphaericaexon
TCONS_00007696-exon-sc0000079-1491911889:104049..104346TCONS_00007696-exon-sc0000079-1491911889:104049..104346Clytia hemisphaericaexon
TCONS_00007696-exon-sc0000079-1510915933:104049..104346TCONS_00007696-exon-sc0000079-1510915933:104049..104346Clytia hemisphaericaexon
TCONS_00007696-exon-sc0000079-1575043694:104049..104346TCONS_00007696-exon-sc0000079-1575043694:104049..104346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:103194..104346 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	6.84801	2.25322	0.173668	0.062124	0.153063	0.0784425	0	0.453616	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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