TCONS_00007721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007721
Unique NameTCONS_00007721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007721 ID=TCONS_00007721|Name=TCONS_00007721|organism=Clytia hemisphaerica|type=transcript|length=1542bp
agaaactAGAACAATAGGTGTTCGAACAATTTAACCAAAATCGAACTATT
CAAACTGACGCTTGGTCAAGAAACAAAACACACACAGCACAAATCGAACA
AAAGTTTTGCAAAcagtaaaaaaatatcgaaacaTAAATCAGCATTTACT
TTGCAAAGccataaagaagaagaaaatacttgacaatttattagttttgg
aggaaaaataatatcaaataatTATCATCAAAAAGTTGCAAATATCGCTT
TAAAGACCATTTATTTGGTCGACTAAGCCAATCGAATCCAATCCGATTTT
ACTGGCTTTTTTTGGTGGTAAATTCACTTATACATTTAGAATTGAGAAAA
TTTGGAATAAAAGAGGACAATGGAAAATGAATTGCATGTTTTTGGAAATG
ACGTCCATAATTTAGAACCACCTTTCGACCAAAACATGAACTTCTCGGAA
CGCCGTAAAAGGACTTCTTACAAGATTGAAGACATTTTGggcatcaaaat
caaaacatcagaTGGAGAAGAAGAAAGCGATGAGAGTATGGAAAACCTCT
CACCGACCACATCTGGTTCTTTAAATGGCTCTGAAGACGATAGTGACGTC
TTTGACAACAGCCCAACACTCGACCACAACACTTTAATGACAACAGTAGC
TGACCAACATGTAAATAGTCTCAGTGCATCCCCTACCAACAACTTTATGG
CTATGTCCGGTGTTACACATAACCGGCCACGGATACCGATCAAGAAACGG
CGCTACCGGACCACATTCACCACGCATCAACTTGAAGAACTGGAAAGCAT
ATTTAACAGGACGCACTACCCAGATGTCTTTCTAAGAGAAGAAATTGCGT
TGAAATTGGGATTGACTGAGGCAAGAATTCAGgtATGGTTTCAAAACCGA
CGTGCAAAATGGCGGAAACGAAACAAAACCAACGTTAACCAACCACATCA
CATTCCTTTCGGTTCGTCCGCTACAAGTAACCAAATGAACCCATTGCAAA
GTAATACAGCTATGCGACTGATGAATAAAAGTTGCAGATGAATCACAACC
TAACTGGTGGGATATGCAAAGTCAAACCGTATGAGTATCTGTGGCAGAGT
TTTTCGATGGATTTTGAAGCACCGCAAGATTGCTTTGATGAACCATAGAG
GTTACCTAGGGATACTAAAACCTTTCAATGAGAGACAAAGATACTGGTGA
ACCCGTCAATAAGTGACGGGGCTTGTACTTTTTTGGATCACATAAGGTAG
TGGAAGAAAGACTGATAAAAACAGAAAACACTGGCATAACCTTCGGATGA
TAACAATAAATTTATTCCTAATTTCACGGAATTATGTCAATTGACAAGAG
TGGCCATGTGCCGCCATGTGTTACAATTAATTATGGGATCTTAATGACAT
AGAAGGAGAGCAATCCATTTTGTCTGTGGTATTTATTGACTGATATTGGA
ATAAATctacattttaaggcttatacTCGAATTCTGCAATACAAGATTTG
ACGAGGGCTTCAAGATGCCTGATAAAAAAGACGAATCCTTTT
Run BLAST on NCBI

protein sequence of Prdl-b

>TCONS_00007721-protein ID=TCONS_00007721-protein|Name=Prdl-b|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MENELHVFGNDVHNLEPPFDQNMNFSERRKRTSYKIEDILGIKIKTSDGE
EESDESMENLSPTTSGSLNGSEDDSDVFDNSPTLDHNTLMTTVADQHVNS
LSASPTNNFMAMSGVTHNRPRIPIKKRRYRTTFTTHQLEELESIFNRTHY
PDVFLREEIALKLGLTEARIQVWFQNRRAKWRKRNKTNVNQPHHIPFGSS
ATSNQMNPLQSNTAMRLMNKSCR
Run BLAST on NCBI

transcript from alignment at sc0000079:15356..22776-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007721 ID=TCONS_00007721|Name=TCONS_00007721|organism=Clytia hemisphaerica|type=transcript|length=7421bp|location=Sequence derived from alignment at sc0000079:15356..22776- (Clytia hemisphaerica)
AGAAACTAGAACAATAGGTGTTCGAACAATTTAACCAAAATCGAACTATT
CAAACTGACGCTTGGTCAAGAAACAAAACACACACAGCACAAATCGAACA
AAAGTTTTGCAAACAGTAAAAAAATATCGAAACATAAATCAGCATTTACT
TTGCAAAGCCATAAAGAAGAAGAAAATACTTGACAATTTATTAGTTTTGG
AGGAAAAATAATATCAAATAATTATCATCAAAAAGTTGCAAATATCGCTT
TAAAGACCATTTATTTGGTCGACTAAGCCAATCGAATCCAATCCGATTTT
ACTGGCTTTTTTTGGTGGTAAATTCACTTATACATTTAGAATTGAGAAAA
TTTGGAATAAAAGAGGACAATGGAAAATGAATTGCATGTTTTTGGAAATG
ACGTCCATAATTTAGAACCACCTTTCGACCAGTAAGTTATTGATTGTGTT
AAAATGATAAAATTCTTCTATTTTTTTCTTTCTTTTTTTTCCTTATTGGT
TTTATTTTTGTTTACTAAAATAAATACCGCAATTATGACTAGCCCCACGG
AAGCTCTACCACAAGTAAGAAAAAACAGTAGCTTCAAACTAAAGAAGATA
CAAAAAAGCTTTTAAACAGTAGTTAGTAAGAATTTCAAAAATTCCCTTAC
TCATCGCTTGGAAGGAATCCGGTGGATATCAGGGGAACCCCCCCCCCCCA
CTGTAAAGAAAATTTTAGTCACTTGGGAATTAACTAGCTAACATTTGAAA
GACAATTTTCCCCGAATGATTCGTGAAAAAGTTTTGTTATCCAAAAAAAC
AAAAGCCTCCGTTAAGCTAGACTCCTCCCCCTTGATTACAAATTTATCTG
ATTTTGATGTAATAAAGCAAATAGACACCCCACAAATCGAATAAGATTTG
GGCCTTATGATCCCCTTATGATTAATCACCGTACTCTTTTGTGCTTAATT
GTAGGGGGGGTCACTTTGCAATTTTTCGATAAAAACACCACCTGCTTACT
CCAACCCTCCCCCCCAAACCAAATGGTCAATCATTATCGTAAAATTTTAA
ATCAAATTACTAAAGGGCTATCCAAGGAGCCTCTTGGATTTTTTTGGCGA
AATTTTGAAGAAAACACCCCTAGATTTCAGATATGTAGAGTAGGTGTTCA
ATATAACAATTTGAACAAGATGTACTTTTTCTAATCGATTCCGATATACA
TATATAGCATTTTCTTTACAATAGAAACATGAACTTCTCGGAACGCCGTA
AAAGGACTTCTTACAAGATTGAAGACATTTTGGGCATCAAAATCAAAACA
TCAGATGGAGAAGAAGAAAGCGATGAGAGTATGGAAAACCTCTCACCGAC
CACATCTGGTTCTTTAAATGGCTCTGAAGGTAGGTTGTCTTTATAGAGCA
TCTAACAGGGGAAAAGGTATTAGCGAGGACATCAGATTGACTAAAGCGAT
TTGGAATAACCCTCAGTTTTGACTCGCAAATTCGAGGACGGTAAAAACTT
GTTTACCGCAGTCCTCAGTTTATTAAGATCTTTAGAAATCAGAAGTTAAC
CGTCTCCGTTGTAGAAAAACAAATAAACACACAACCTCGTCCCCGTGTAT
CCCAGGCTTTATTTACGTTACTTATCGACTCCAGAGAATACAGTGGTGTT
GGCAGGTGCGAGTTCCACCTCTCAGAGGGGGAACTTCTCAAAACAATACT
TCATAAAAAAATATGGCGTTACAAAGTTACACTGCAGTGTAATGGTTTCA
AATCCAGGAACAAATGAAATCTGATGTTTTGTTTTTGAATTACGTAATCT
TAAGCGTTCGAAAAACCGACAATGCCAGGATATTATCTAATGCATCAAAA
AGCATCAAAAAGCTGATAATGCGCAGGGAACGAGGTTGATAAACACCTAT
TGCTGAAATCTTTTTGAAATTTCACATGCAGTTGAAGTATAAAAATGTGC
CTAATTTTCTGATTAAGAGGTTGAAAATAGGAACTTTTCTTGAAACATTC
TTCAACTTTGACATTGTATTTAGATCATAAAATCACCCTCGAATAAGATT
TTTTTAGGAAATAAATGGCAGAACATTTGCAGCAAAGAAAAATGTCTTTT
AACAATGAACTGAACAACTGCAAACATAAAGTTTCAACAGAACCAAACCA
AATTGACCTTAACCTGAAGAAGAGTTTATTATTCCAATAATAATGTTGTC
GAGTAAACGACAATAATAGACAGCAGCAAAACTATAACATTTAGTAACCG
TCGAATCCACCAGAGGCTGATACTGTCAATAAAACTGATTTTTTATGACA
ATAAAACTGACTTTTTTAATTTATGACAATAAAACTGACAGTCAGATAGG
AAAAAGAAAGAAAACAAAATTTGGGATTGATTTTAAGTGTTTACTTACGG
TACCACCAGAATACAATCAGCTATTGGCAACTTCATCGTGCTAGCTCGTT
AAATGAAATGACTTCTCCTGAAAAAGTGAAAAAAAATGTACGAAAATAAT
CCAAGCCAATTCCAAAGATGATCTTGAAATTTCAAAGTTTTACAGAACAA
AATACGGTTAAACCCATGTAATTCAAACTTCTATAATTCGATTCGAATAT
GCACTTAATTTCGAACAGATTTTGTGATCCCCTCAGAAAAAACCTTACTT
ACAAGAAAAATCCTTCTCATTCATACCCATGTAATTTCATTTCAATTGAA
AAGATTTCAAGTTTCATCAAGAAATTTTGATGATGCAATTCATATTTTCG
AATTTTTTTAGTTTTTGAATCTGACGGAAAATTCCATTTTTTGTCAATGG
AACTTTTTCGACATTCTTATATCATTGTATCGCAACCGAATTTGTTTTTC
TAGCCACCATAAAAACTTTTTTGAAAGATCACGAGATTTTTTTCTAAATT
TCAAAAAAATTGTCCTTGTCAAGATTACTGATAGTATTTCAATATTCAAA
ATTCAAAATAGAAAAATGTGCAAAAGTAAACCTGGAAGAGTCTTTTTTCA
TTAAATTTAATTCCAACCAAATTCTCGATCCCTTGACAATTAATTCGACT
TACAACTGCGACATGAAAGTGGTACTCCTGTGCGGAAATTCGAACCCTGG
CCGCCTGGGTGAAAACTAGAAATTCTCGGACTAAATTTTCGACCCTTGAG
AATTGGAATTGGTAATTTAAATGGGTTTAACACTAGAGGGACGGGAAGGG
TGGCAGTGAACACAGAATCTATTTACAGTAGTTTAGATCACTCGCTGAGT
AATGGTCGAAGAAGGATCAAAGTATAACGTTTTTAAAGTCAAAACGGGGA
TAACAGCGGGGCTTCATATTCCTATAATAGCCTCCTATATATTTCGGAAG
GTCATTATCTGATTTTGACACGGAAGGGGTTGAGTTTTTGGGCCTCGAAA
CGGTGGGTGATGGTGTTTTCAATTGGTTAGAGTTTTGTGTAAGAACAGAG
AAACGCCGGTAGCAACAGAAACGAAGCAACGATGGCTTTAAACAAAACAA
TAAGAAATGAAGATAAGACTCAAAAAACTCGTACTAACATTACAAACAAA
CCTAAACAAAACAGAACAAACCAACCAGATAACATCCCTCCTATTGTAAC
ACTGCAAGGGTTAAGTTTGACATAAACCACGTCCTCAAAATATTCTTAGT
TTTTGGTCTTGGCTGTAATAATAAAGAAGGGAGTCGCAGTGTTGTCGTGT
TTTCAATTAGTTAGAGTTTTGTGTAAAGCGCAATGATAAGAACAGAGAAA
CGCCGGTAGCAACAGAAACAAAACAACGATAGCTTTAAACAAAACAATAA
GAAACAAACAAACTAACATAACAAACCAAACCAAAACAATGTAAAAACAA
CTAAACAAAACAGACACACACAATACACTGAGATTTCTAAGAATTCGCTG
AATCTAGAATTTTTCATTCACCAGTCGATCAAAAACGAAGCAAAAACCCT
GCGAAACTAAAGTTTTTCATACAAATATTAGCAAGGTGATTTTCACAAAT
ACGACCCCCAATAATAGAGCATTTACAGTATCTTCATTCTTTTACAAAAG
CCACTGATGTCTATTTTATAACATTTTTCATTTTGTTACACTCCAGACAC
TCATGACATGTTACAATGGCTGATTCAAGACATGACATACTGTAACGACG
ATTAACGACTATCTGTACAGTTGCCAAGACAGACACCATAATACAGACAA
AATACAAGCACTTTTGGGTAAGTAGTTGTTGATCCATCAAAGAGTTAGAT
TTTGAACAGTAATCGTCAGTCGTGCAAAATTACTCGAATCTAATTGGTTT
AAAGAAGTGCGATTAATCGTTAATTGCACTATTACACTTACTATTACTTT
TTACACTCTACGGCGGGGGGGGACGCTTCGTCCTAACGTCAAAATGTTTC
CTTTTTTTCAATAAAAACTTATGATTTACTGACGATTACTAGTACTATTA
CAAAATCCAATTTATAACAAACAGAATGTCCAATGTCATCATTCATTACA
TTATCGAGCATTCTCAACAATATATTAGAAACAAATTGATGTACCACACA
ATAAAGTATAATAAGCCAAAAGGGCTAGAATCGAATCTCCTTGGTAGGAT
TTGAAGCCTACCAAATCCTACCAAAGTTGCGCGGCCTAGCGCGGTCCACC
TGGTTTTTACACAAAATGACAGATTGAAACTAAAATGTGCACCTAAATTT
CGAAAAAGATATCACTCGAAAACAAAGGAATGGCTAGATTCAATCTGTCG
TCAAAAATACGGCGCATATTTAAAGGCTTCGCTTTTTCTTGCCTGAGAAA
TATTAAAGAATCGATTCTAGCCATTCGGGCCTCTAAAATTTTTTTCTCAA
ATGGACAATTGACTGTTTTGAAGAAACTTTGCCGTGAGCGAAATACCTCT
CATATTCAATGTTGGGATATTTTTGTCCTTTTAAATACGAATAGAAAAAT
GTTCAAGTGCGGGATTTAAAACTGTCATTTTCGTATCTTAACAGTGCAGA
CAGAAGAGAGACACGGATTCGTACATATGATTATTTAAAACGTTTGACAA
AATGTTTTAAAACTTTTTACAGTACACTGGTCTAATATCGACATCCCTCG
TCTAATTTCGATTTCCTTCTTTGGAGCTTGGAATAATATGAAGGTTAGAA
TCGTCGGTCGCTAATTGGAGGTCAGAGAGGAAAAAATCTGCTCTCAATCA
GTGTTTCCCACCTACCTCATAGGCGGTTTTAGACCCTGTCGAACTTATCG
GGGGAGAGATTAGTAATTGTAATTTCATTGTCTTTTAACAAGCGGTGCAC
TCCTTCGCATGTTTCCGACGTACTTGCTCTATTGTCTTAAATCCGCCAGT
GTACCTTTTAATCATGTCTATAAGAAGGGTGTCGGAATTAGATGAGGGAT
GTCGACAGTAGACCAACTTACGGTATACAACAATTTTCTATCTCTCTTTC
TACAACAGACGATAGTGACGTCTTTGACAACAGCCCAACACTCGACCACA
ACACTTTAATGACAACAGTAGCTGACCAACATGTAAATAGTCTCAGTGCA
TCCCCTACCAACAACTTTATGGCTATGTCCGGTGTTACACATAACCGGCC
ACGGATACCGATCAAGAAACGGCGCTACCGGACCACATTCACCACGCATC
AACTTGAAGAACTGGAAAGCATATTTAACAGGACGCACTACCCAGATGTC
TTTCTAAGAGAAGAAATTGCGTTGAAATTGGGATTGACTGAGGCAAGAAT
TCAGGTACAACAATGTCAAAGTTATTTTTCTAATTCTTTATCAATTTCAT
TGATGATTGAGAAATCTTCTAAAGTTTTTTATGGTAAACCAGTAGCAGGC
TTCAGCACACCTTACGAAAATTAATATGACAGAATAAGAATTGAATGTCT
ATTTGTATCCATCAACTGTAATAAAATACTAGTATACTATAAAAGAGTCA
AACAAGCGCCCCGTACTGGGATCTATTTCAATATTTCTTACTATTTAAAG
GCCCAATTGTAACAAAGTTTTTGAAAAAATGAGAAAAACACACTCGGATA
TTCACCCAATAAAAAGGTGTCAAATTTCAGCCAAGTCGGGCTATTTTTGA
AGTCTCCAATCCAACCCACATATACAGACAGATTAACATTCTCAAATTCT
AACTCGGCTGAAGTTGAGAGCTAACAGAGCTAACTACTATCACTAACAAG
GCAATGCAATATGTAAAAGCCTTTCAAACTCGGATGTATTTGCGTCAGAA
AAAAATCTGAGTTCTATAGTACAGTAAGCACTTTTACACCGACGAAAGCA
AAATTTACGTCCGAATACCAACGCTAATCAGAATGGCTGTACAGCCACCT
ATAAATTATGAAAAGGCAATCCATCCAATCCAAGCCAATCCATCAATGTA
AGAAAGAAGAGGCTAACAATTGTATATTTTGAATATTTAGGTATGGTTTC
AAAACCGACGTGCAAAATGGCGGAAACGAAACAAAACCAACGTTAACCAA
CCACATCACATTCCTTTCGGTTCGTCCGCTACAAGTAACCAAATGAACCC
ATTGCAAAGTAATACAGCTATGCGACTGATGAATAGTAAGTCAAATTACG
GTGGAAACAATGCTCCAGCTTTAATGGGTTACCAACAATCACCCATGGTG
TATAACAACATCTTGAAATCGTTATCTAATCAACCCAGCCCAAAAATGAT
GAGCGAGAATAGAAATAACTCCAATAACCTGTTTTGGTACAGGTGTGGAG
CCAACGCCCAAGCACCTCAACGAAATTTTTTCCCCTGCCCTACAGACTCA
AGGNTGTGGAGCCAACGCCCAAGCACCTCAACGAAATTTTTTCCCCTGCT
CTACAGACTCAAGAAATATATCACCAGGAAATAATACAAATTTCTATTTT
GGTGAGAAAGTTGCAGATGAATCACAACCTAACTGGTGGGATATGCAAAG
TCAAACCGTATGAGTATCTGTGGCAGAGTTTTTCGATGGATTTTGAAGCA
CCGCAAGATTGCTTTGATGAACCATAGAGGTTACCTAGGGATACTAAAAC
CTTTCAATGAGAGACAAAGATACTGGTGAACCCGTCAATAAGTGACGGGG
CTTGTACTTTTTTGGATCACATAAGGTAGTGGAAGAAAGACTGATAAAAA
CAGAAAACACTGGCATAACCTTCGGATGATAACAATAAATTTATTCCTAA
TTTCACGGAATTATGTCAATTGACAAGAGTGGCCATGTGCCGCCATGTGT
TACAATTAATTATGGGATCTTAATGACATAGAAGGAGAGCAATCCATTTT
GTCTGTGGTATTTATTGACTGATATTGGAATAAATCTACATTTTAAGGCT
TATACTCGAATTCTGCAATACAAGATTTGACGAGGGCTTCAAGATGCCTG
ATAAAAAAGACGAATCCTTTT

Coding sequence (CDS) from alignment at sc0000079:15356..22776-

>TCONS_00007721 ID=TCONS_00007721|Name=TCONS_00007721|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000079:15356..22776- (Clytia hemisphaerica)
ATGGAAAATGAATTGCATGTTTTTGGAAATGACGTCCATAATTTAGAACC
ACCTTTCGACCAAAACATGAACTTCTCGGAACGCCGTAAAAGGACTTCTT
ACAAGATTGAAGACATTTTGGGCATCAAAATCAAAACATCAGATGGAGAA
GAAGAAAGCGATGAGAGTATGGAAAACCTCTCACCGACCACATCTGGTTC
TTTAAATGGCTCTGAAGACGATAGTGACGTCTTTGACAACAGCCCAACAC
TCGACCACAACACTTTAATGACAACAGTAGCTGACCAACATGTAAATAGT
CTCAGTGCATCCCCTACCAACAACTTTATGGCTATGTCCGGTGTTACACA
TAACCGGCCACGGATACCGATCAAGAAACGGCGCTACCGGACCACATTCA
CCACGCATCAACTTGAAGAACTGGAAAGCATATTTAACAGGACGCACTAC
CCAGATGTCTTTCTAAGAGAAGAAATTGCGTTGAAATTGGGATTGACTGA
GGCAAGAATTCAGGTATGGTTTCAAAACCGACGTGCAAAATGGCGGAAAC
GAAACAAAACCAACGTTAACCAACCACATCACATTCCTTTCGGTTCGTCC
GCTACAAGTAACCAAATGAACCCATTGCAAAGTAATACAGCTATGCGACT
GATGAATAAAAGTTGCAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004378XLOC_004378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007721-exon-sc0000079-1575043694:22346..22776TCONS_00007721-exon-sc0000079-1575043694:22346..22776Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1575043694:21398..21552TCONS_00007721-exon-sc0000079-1575043694:21398..21552Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1575043694:17023..17318TCONS_00007721-exon-sc0000079-1575043694:17023..17318Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1575043694:16192..16336TCONS_00007721-exon-sc0000079-1575043694:16192..16336Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1575043694:15356..15870TCONS_00007721-exon-sc0000079-1575043694:15356..15870Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1510915933:22346..22776TCONS_00007721-exon-sc0000079-1510915933:22346..22776Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1510915933:21398..21552TCONS_00007721-exon-sc0000079-1510915933:21398..21552Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1510915933:17023..17318TCONS_00007721-exon-sc0000079-1510915933:17023..17318Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1510915933:16192..16336TCONS_00007721-exon-sc0000079-1510915933:16192..16336Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1510915933:15356..15870TCONS_00007721-exon-sc0000079-1510915933:15356..15870Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1491911889:22346..22776TCONS_00007721-exon-sc0000079-1491911889:22346..22776Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1491911889:21398..21552TCONS_00007721-exon-sc0000079-1491911889:21398..21552Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1491911889:17023..17318TCONS_00007721-exon-sc0000079-1491911889:17023..17318Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1491911889:16192..16336TCONS_00007721-exon-sc0000079-1491911889:16192..16336Clytia hemisphaericaexon
TCONS_00007721-exon-sc0000079-1491911889:15356..15870TCONS_00007721-exon-sc0000079-1491911889:15356..15870Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Prdl-bTCONS_00007721-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:15356..22776 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.179459	0	0	0.239445	0	0	0	0	0	0.445532	0	0.21957	1.75837	0	0	0	0.26797	4.34888e-08	0.443419	0.0198345	1.88299	0	0.0920212	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000047HTH_motif
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
Blast
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BLAST of TCONS_00007721 vs. Swiss-Prot (Human)
Match: ARX (Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.292e-22
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:  766 FTTHQLEELESIFNRTHYPDVFLREEIALKLGLTEARIQVWFQNRRAKWRKRNKTNVN 939
            FT++QLEELE  F +THYPDVF REE+A++L LTEAR+QVWFQNRRAKWRKR K    
Sbjct:  335 FTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQ 392
The following BLAST results are available for this feature:
BLAST of TCONS_00007721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARX1.292e-2270.69Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 S... [more]
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