TCONS_00007727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007727
Unique NameTCONS_00007727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007727 ID=TCONS_00007727|Name=TCONS_00007727|organism=Clytia hemisphaerica|type=transcript|length=1457bp
CTTTGATGTTcaataattcaattttctatgaTGAGATAAAGTTCAACGAT
GAAACACATCATACTTTTGGTTACATTTTTCTCATTGACACAAGGTTGTC
AAGATGGTGTAGATTTTTGTGAGGAATATTATTCTAAAGATAAAGATTAT
TATTGTTCCCATGAATTCCTGAAGATCAATTGTAAGAAATTTTGCGGATT
GTGTGTTGTAACAACCCCATCACCAGaaGGTGACTGCGTTGACCTAAACG
TGAAATGTCCAATTTGGGCAGGTGTTTGCTACACTAACTGGTATGTCAAA
ACCAATTGTAAGAAATCATGTGGATTCTGTCCTGGCGTTACAAATCCACC
TGTTACTAACCCGCCCTTAAGCAGTTGTGGACGCCCGCAAGTTGCAATGT
CCAGAGTTGTCGGTGGAAAAGATGCTAAAGCTCATTCATGGCCATGGCAA
ATCGGACTTCACCGCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAA
CAGCCGATGGGTTGTTACTGCTGCTCATTGTGTTAATGGAATGTCTTTGC
TGACCACAAACTTTACTGTCAAATTAGGAGATCATGACCGAAGAATAAAT
GAAGGCGAGCAGATCATAAAAGTATCAAAAGCTGTTGTCCACTATAGTTA
TGAAAATTCAAGGGAATCTAAGTTTGATAACGACATTGCTTTATTACAAT
TGGAACAACCAATTAAATTCGGACGAAATGTTCAACCAGTCTGTTTACCA
AGCCAAGGAGATGCTCCAAAAGTTGGTAGCAAATGTTACATCACCGGATG
GGGAAAGATCGGTCACCAAGGAGGTTCACACACCATCCTTCAACAACTTG
GTCTAACTGTTCAAAGTAAAGAAACTTGCGCAAAACATAATTCGAAGATC
GGAAAGATTACAGATCGAATGATATGTGCTGCAAACTTCGATACAACCAA
GAATCAGTCAGGTTGTCATGGTGATTCAGGTGGTCCATTCGTTTGTCAAA
ACAGTAATGGTTCATGGACACTACATGGAGCTGTCAGCTGGGGATCACCA
AAATGTGACACAAAAGATGCAATTAGTGTCTTTGCAAGAGTTGGTCAATT
CAGAGACTGGATTGAGAAAActattcaataatttttcacagTTTTGTTTA
AACAAAtaagtttctttcaaaaataaaagctGATTGAATCAAATCACTTG
ATTTTTGCTTTGAAGTGCTGATTACAAACATTTCCGACATTCGAAAGTTT
CTCAAATTAACAGAATATATCAAATTCATTCTCATAATAGTTCATCTTTA
TTTGActacattttcattaaaatagcgcTGCATATGGAAAGTTGATGAAA
TTTAAATCCCTATATAAACAGGTGAATTTATCTCAATTTAGAATTTAATT
GAAATTggtgaaagttttttattcccCCGTTCATTAATTTTCAATTACTC
TCGtctg
Run BLAST on NCBI

protein sequence of TCONS_00007727-protein

>TCONS_00007727-protein ID=TCONS_00007727-protein|Name=TCONS_00007727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MKHIILLVTFFSLTQGCQDGVDFCEEYYSKDKDYYCSHEFLKINCKKFCG
LCVVTTPSPEGDCVDLNVKCPIWAGVCYTNWYVKTNCKKSCGFCPGVTNP
PVTNPPLSSCGRPQVAMSRVVGGKDAKAHSWPWQIGLHRNGGFMCGGSII
NSRWVVTAAHCVNGMSLLTTNFTVKLGDHDRRINEGEQIIKVSKAVVHYS
YENSRESKFDNDIALLQLEQPIKFGRNVQPVCLPSQGDAPKVGSKCYITG
WGKIGHQGGSHTILQQLGLTVQSKETCAKHNSKIGKITDRMICAANFDTT
KNQSGCHGDSGGPFVCQNSNGSWTLHGAVSWGSPKCDTKDAISVFARVGQ
FRDWIEKTIQ
Run BLAST on NCBI

transcript from alignment at sc0000079:167112..170701-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007727 ID=TCONS_00007727|Name=TCONS_00007727|organism=Clytia hemisphaerica|type=transcript|length=3590bp|location=Sequence derived from alignment at sc0000079:167112..170701- (Clytia hemisphaerica)
CTTTGATGTTCAATAATTCAATTTTCTATGATGAGATAAAGTTCAACGAT
GAAACACATCATACTTTTGGTTACATTTTTCTCATTGACACAAGGTAAGC
CAGTGGGAATTTCAAGACTCCCAAGAAAATTCAATACAGGGGTGACCGAT
CGTTTGCTACAGACAAATTGGCGACTTTAAAAGTTTTGTTTTTATATAAG
TGTTCCCGTTTCATATCAGACACATATTTCATATCAGGACAGTGCCTGTA
TACTATGGTGCTAGTTAGCAAGGAAAGTGGATTCAACTTCAAAATACTGT
ATGAGTTCTACTATGATGAGTTCCCGAGGCAAGAAACTAGTAGTAGTACT
TAGAACTATGTATTTAGAAATAAGAAAATATGATAAACTTAAATCTTTAC
TTCCTCTCGGATACTTGATAGGCGGGGGGTTTGGAAAAATGTCCTGGGTG
GAAAACTGAGGATAATGCAGCAGAATCAGGGCAAATAAGAGAACTTTATA
AAAAATTTTCCCAAGAACTTATTAAGCAGGGGGCTGGAATAAAAATCAAA
AAATTAATCCGCATGGGGCGCTTATTAGGTACCCGAGATTACGCCAGGGT
AGGCTATTTTCAAAACATTCTTTTACCGTGTAGGTTGTCAAGATGGTGTA
GATTTTTGTGAGGAATATTATTCTAAAGATAAAGATTATTATTGTTCCCA
TGAATTCCTGAAGATCAATTGTAAGAAATTTTGCGGATTGTGTGTTGTAA
CAACCCCATCACCAGGTAAATATTCATCATATTTATTACGTAATGTTTTT
TCGAACACAACTCAGTTTTAGCCAGTAGTGGTAATTTTAATCAACTTTCT
CTAACTTAAATTTCTCAAAATTTGCCACTACTGGCAATCAGGGTGTCTGT
AGAAAAAATCACATGAATATTTTTTTAAGGGTTTTCTATCAGCTACCTTC
CCCTGGAGGACTAACTAAATTATAGCAAACAGATGTCTTTTTGGAGTAGA
TTTTCCTGGAGCCTGAAAGTGGATGCTAGAGATAAGATGTTTATTTTTGG
ATTTTTTATTTACCATTTTTTATTCATTTTATATACATTGATCAAGCAAG
CTGAATAGACTGGGTTAGGATACATTATTTATGGTCTTATGCTATGCCCT
GTGTCACAGACCCAACCTTGACCCCCTTCTTGGCCGATATTTTGTCCTGG
TGTGATAAATATAGTAAAATTTCAGTCCCACTTGGAAATTTGGAGACTTT
GATTAAATTCCCATTTGAAATTCAACAAATAATATTGCACTTCAAAATCG
TCCCCTATGGAATTTTTGAAAAAAAGTTTCAACGGGGCTATGAGACATGG
GTGTTTTCATAAAATGATGGTTGATTCTACACCTGGTTATTGGTGGAATA
TTGGATTTTCGATTTCGATTCGCTGCTCCTGTCCTTTGAGAATATAAAAT
AAATAATCAGATAAGTGGCAAGTCTGAGGGTGTAGTCAAAATAATGACGG
ATAATGATTCGTATTGGGGAGCGTAAGAGTATCATTTAATGATTTTTAGA
AGGTGACTGCGTTGACCTAAACGTGAAATGTCCAATTTGGGCAGGTGTTT
GCTACACTAACTGGTATGTCAAAACCAATTGTAAGAAATCATGTGGATTC
TGTCCTGGCGTTACAAATCCACCTGTTACTAACCCGCCCTTAAGCAGTTG
TGGACGCCCGCAAGTTGCAATGTCCAGAGTTGTCGGTGGAAAAGATGCTA
AAGCTCATTCATGGCCATGGCAAATCGGACTTCACCGCAACGGTGGATTT
ATGTGTGGAGGTTCAATCATCAACAGCCGATGGGTTGTTACTGCTGCTCA
TTGTGTTAATGGAATGTCTTTGCTGACCACAAACTTTACTGTCAAATTAG
GTAAATCAAATTCCATTCAATCAAAAAGCAAAAAAATACTTTAACAATAA
AAAAGGCTCAACTAGTTTTCAAAAGTAAAGAAATTTAATTTAAATAGCTA
ATCTCTCCCTTTGTATCCGTTTGATGTATAAAACGGTAGAAAATCGACAG
AAAATTGATAGTTTTAAAACATTGCTTGAAAAATAGCCTTCAGATACCCG
CGCATTGATTTCAAAATCGGCATCGCAAGAGGACTGTCTACTTTCTGTCA
ACTTCCGTCAACAATTAGGGAAGATCAGGCACACACGTCCAAAACAAGAT
GTTACAGGAGTAGAAGAAAATGTTTATATCATAAAGCTAAAGGTTATGTT
AACAAACCCTAACTTTTTGAATCTTTTAGGAGATCATGACCGAAGAATAA
ATGAAGGCGAGCAGATCATAAAAGTATCAAAAGCTGTTGTCCACTATAGT
TATGAAAATTCAAGGGAATCTAAGTTTGATAACGACATTGCTTTATTACA
ATTGGAACAACCAATTAAATTCGGACGAAATGTTCAACCAGTCTGTTTAC
CAAGCCAAGGAGATGCTCCAAAAGTTGGTAGCAAATGTTACATCACCGGT
AAGCTAAGCCAAGTAGTCAAATAATATTCAATTAAACAGAGTTTTGAATG
GTATGATGACAAGGATCGTTAGTTAGTAATGTCGTTATGTGATTTTCTAA
ATTTGCCCAAGCAAAAATGCTGGGATCTCTGATTATTATCGGGATGGAGG
CAAAATATCCTAATTTTGTAAATTTGTGATATTTGAAAAGGTACCTCTAA
GTGGATTTTAAGGGTATATTATATTATATATATATTAAAATATTATACGA
AATTTCTAGAATCTAATAGTATCCTCCATCGAATATTATATATTAAAGTT
TTATAAGGCTTTCAAATACATAATTTTAGGTTTGCATTATCATTCTCTCG
GCCCTAAATTTAATGATCACGTATATATATACCGAGGCTTTAACTTTTTT
TTATAAGTCATCATTTCAATAAATTTAAGGATGGGGAAAGATCGGTCACC
AAGGAGGTTCACACACCATCCTTCAACAACTTGGTCTAACTGTTCAAAGT
AAAGAAACTTGCGCAAAACATAATTCGAAGATCGGAAAGATTACAGATCG
AATGATATGTGCTGCAAACTTCGATACAACCAAGAATCAGTCAGGTTGTC
ATGGTGATTCAGGTGGTCCATTCGTTTGTCAAAACAGTAATGGTTCATGG
ACACTACATGGAGCTGTCAGCTGGGGATCACCAAAATGTGACACAAAAGA
TGCAATTAGTGTCTTTGCAAGAGTTGGTCAATTCAGAGACTGGATTGAGA
AAACTATTCAATAATTTTTCACAGTTTTGTTTAAACAAATAAGTTTCTTT
CAAAAATAAAAGCTGATTGAATCAAATCACTTGATTTTTGCTTTGAAGTG
CTGATTACAAACATTTCCGACATTCGAAAGTTTCTCAAATTAACAGAATA
TATCAAATTCATTCTCATAATAGTTCATCTTTATTTGACTACATTTTCAT
TAAAATAGCGCTGCATATGGAAAGTTGATGAAATTTAAATCCCTATATAA
ACAGGTGAATTTATCTCAATTTAGAATTTAATTGAAATTGGTGAAAGTTT
TTTATTCCCCCGTTCATTAATTTTCAATTACTCTCGTCTG

Coding sequence (CDS) from alignment at sc0000079:167112..170701-

>TCONS_00007727 ID=TCONS_00007727|Name=TCONS_00007727|organism=Clytia hemisphaerica|type=CDS|length=5415bp|location=Sequence derived from alignment at sc0000079:167112..170701- (Clytia hemisphaerica)
GATGGGGAAAGATCGGTCACCAAGGAGGTTCACACACCATCCTTCAACAA
CTTGGTCTAACTGTTCAAAGTAAAGAAACTTGCGCAAAACATAATTCGAA
GATCGGAAAGATTACAGATCGAATGATATGTGCTGCAAACTTCGATACAA
CCAAGAATCAGTCAGGTTGTCATGGTGATTCAGGTGGTCCATTCGTTTGT
CAAAACAGTAATGGTTCATGGACACTACATGGAGCTGTCAGCTGGGGATC
ACCAAAATGTGACACAAAAGATGCAATTAGTGTCTTTGCAAGAGTTGGTC
AATTCAGAGACTGGATTGAGAAAACTATTCAATAAGAGATCATGACCGAA
GAATAAATGAAGGCGAGCAGATCATAAAAGTATCAAAAGCTGTTGTCCAC
TATAGTTATGAAAATTCAAGGGAATCTAAGTTTGATAACGACATTGCTTT
ATTACAATTGGAACAACCAATTAAATTCGGACGAAATGTTCAACCAGTCT
GTTTACCAAGCCAAGGAGATGCTCCAAAAGTTGGTAGCAAATGTTACATC
ACCGAAGGTGACTGCGTTGACCTAAACGTGAAATGTCCAATTTGGGCAGG
TGTTTGCTACACTAACTGGTATGTCAAAACCAATTGTAAGAAATCATGTG
GATTCTGTCCTGGCGTTACAAATCCACCTGTTACTAACCCGCCCTTAAGC
AGTTGTGGACGCCCGCAAGTTGCAATGTCCAGAGTTGTCGGTGGAAAAGA
TGCTAAAGCTCATTCATGGCCATGGCAAATCGGACTTCACCGCAACGGTG
GATTTATGTGTGGAGGTTCAATCATCAACAGCCGATGGGTTGTTACTGCT
GCTCATTGTGTTAATGGAATGTCTTTGCTGACCACAAACTTTACTGTCAA
ATTAGGTTGTCAAGATGGTGTAGATTTTTGTGAGGAATATTATTCTAAAG
ATAAAGATTATTATTGTTCCCATGAATTCCTGAAGATCAATTGTAAGAAA
TTTTGCGGATTGTGTGTTGTAACAACCCCATCACCAGATGAAACACATCA
TACTTTTGGTTACATTTTTCTCATTGACACAAGGATGGGGAAAGATCGGT
CACCAAGGAGGTTCACACACCATCCTTCAACAACTTGGTCTAACTGTTCA
AAGTAAAGAAACTTGCGCAAAACATAATTCGAAGATCGGAAAGATTACAG
ATCGAATGATATGTGCTGCAAACTTCGATACAACCAAGAATCAGTCAGGT
TGTCATGGTGATTCAGGTGGTCCATTCGTTTGTCAAAACAGTAATGGTTC
ATGGACACTACATGGAGCTGTCAGCTGGGGATCACCAAAATGTGACACAA
AAGATGCAATTAGTGTCTTTGCAAGAGTTGGTCAATTCAGAGACTGGATT
GAGAAAACTATTCAATAAGAGATCATGACCGAAGAATAAATGAAGGCGAG
CAGATCATAAAAGTATCAAAAGCTGTTGTCCACTATAGTTATGAAAATTC
AAGGGAATCTAAGTTTGATAACGACATTGCTTTATTACAATTGGAACAAC
CAATTAAATTCGGACGAAATGTTCAACCAGTCTGTTTACCAAGCCAAGGA
GATGCTCCAAAAGTTGGTAGCAAATGTTACATCACCGAAGGTGACTGCGT
TGACCTAAACGTGAAATGTCCAATTTGGGCAGGTGTTTGCTACACTAACT
GGTATGTCAAAACCAATTGTAAGAAATCATGTGGATTCTGTCCTGGCGTT
ACAAATCCACCTGTTACTAACCCGCCCTTAAGCAGTTGTGGACGCCCGCA
AGTTGCAATGTCCAGAGTTGTCGGTGGAAAAGATGCTAAAGCTCATTCAT
GGCCATGGCAAATCGGACTTCACCGCAACGGTGGATTTATGTGTGGAGGT
TCAATCATCAACAGCCGATGGGTTGTTACTGCTGCTCATTGTGTTAATGG
AATGTCTTTGCTGACCACAAACTTTACTGTCAAATTAGGTTGTCAAGATG
GTGTAGATTTTTGTGAGGAATATTATTCTAAAGATAAAGATTATTATTGT
TCCCATGAATTCCTGAAGATCAATTGTAAGAAATTTTGCGGATTGTGTGT
TGTAACAACCCCATCACCAGATGAAACACATCATACTTTTGGTTACATTT
TTCTCATTGACACAAGGATGGGGAAAGATCGGTCACCAAGGAGGTTCACA
CACCATCCTTCAACAACTTGGTCTAACTGTTCAAAGTAAAGAAACTTGCG
CAAAACATAATTCGAAGATCGGAAAGATTACAGATCGAATGATATGTGCT
GCAAACTTCGATACAACCAAGAATCAGTCAGGTTGTCATGGTGATTCAGG
TGGTCCATTCGTTTGTCAAAACAGTAATGGTTCATGGACACTACATGGAG
CTGTCAGCTGGGGATCACCAAAATGTGACACAAAAGATGCAATTAGTGTC
TTTGCAAGAGTTGGTCAATTCAGAGACTGGATTGAGAAAACTATTCAATA
AGAGATCATGACCGAAGAATAAATGAAGGCGAGCAGATCATAAAAGTATC
AAAAGCTGTTGTCCACTATAGTTATGAAAATTCAAGGGAATCTAAGTTTG
ATAACGACATTGCTTTATTACAATTGGAACAACCAATTAAATTCGGACGA
AATGTTCAACCAGTCTGTTTACCAAGCCAAGGAGATGCTCCAAAAGTTGG
TAGCAAATGTTACATCACCGAAGGTGACTGCGTTGACCTAAACGTGAAAT
GTCCAATTTGGGCAGGTGTTTGCTACACTAACTGGTATGTCAAAACCAAT
TGTAAGAAATCATGTGGATTCTGTCCTGGCGTTACAAATCCACCTGTTAC
TAACCCGCCCTTAAGCAGTTGTGGACGCCCGCAAGTTGCAATGTCCAGAG
TTGTCGGTGGAAAAGATGCTAAAGCTCATTCATGGCCATGGCAAATCGGA
CTTCACCGCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAACAGCCG
ATGGGTTGTTACTGCTGCTCATTGTGTTAATGGAATGTCTTTGCTGACCA
CAAACTTTACTGTCAAATTAGGTTGTCAAGATGGTGTAGATTTTTGTGAG
GAATATTATTCTAAAGATAAAGATTATTATTGTTCCCATGAATTCCTGAA
GATCAATTGTAAGAAATTTTGCGGATTGTGTGTTGTAACAACCCCATCAC
CAGATGAAACACATCATACTTTTGGTTACATTTTTCTCATTGACACAAGG
ATGGGGAAAGATCGGTCACCAAGGAGGTTCACACACCATCCTTCAACAAC
TTGGTCTAACTGTTCAAAGTAAAGAAACTTGCGCAAAACATAATTCGAAG
ATCGGAAAGATTACAGATCGAATGATATGTGCTGCAAACTTCGATACAAC
CAAGAATCAGTCAGGTTGTCATGGTGATTCAGGTGGTCCATTCGTTTGTC
AAAACAGTAATGGTTCATGGACACTACATGGAGCTGTCAGCTGGGGATCA
CCAAAATGTGACACAAAAGATGCAATTAGTGTCTTTGCAAGAGTTGGTCA
ATTCAGAGACTGGATTGAGAAAACTATTCAATAAGAGATCATGACCGAAG
AATAAATGAAGGCGAGCAGATCATAAAAGTATCAAAAGCTGTTGTCCACT
ATAGTTATGAAAATTCAAGGGAATCTAAGTTTGATAACGACATTGCTTTA
TTACAATTGGAACAACCAATTAAATTCGGACGAAATGTTCAACCAGTCTG
TTTACCAAGCCAAGGAGATGCTCCAAAAGTTGGTAGCAAATGTTACATCA
CCGAAGGTGACTGCGTTGACCTAAACGTGAAATGTCCAATTTGGGCAGGT
GTTTGCTACACTAACTGGTATGTCAAAACCAATTGTAAGAAATCATGTGG
ATTCTGTCCTGGCGTTACAAATCCACCTGTTACTAACCCGCCCTTAAGCA
GTTGTGGACGCCCGCAAGTTGCAATGTCCAGAGTTGTCGGTGGAAAAGAT
GCTAAAGCTCATTCATGGCCATGGCAAATCGGACTTCACCGCAACGGTGG
ATTTATGTGTGGAGGTTCAATCATCAACAGCCGATGGGTTGTTACTGCTG
CTCATTGTGTTAATGGAATGTCTTTGCTGACCACAAACTTTACTGTCAAA
TTAGGTTGTCAAGATGGTGTAGATTTTTGTGAGGAATATTATTCTAAAGA
TAAAGATTATTATTGTTCCCATGAATTCCTGAAGATCAATTGTAAGAAAT
TTTGCGGATTGTGTGTTGTAACAACCCCATCACCAGATGAAACACATCAT
ACTTTTGGTTACATTTTTCTCATTGACACAAGGATGGGGAAAGATCGGTC
ACCAAGGAGGTTCACACACCATCCTTCAACAACTTGGTCTAACTGTTCAA
AGTAAAGAAACTTGCGCAAAACATAATTCGAAGATCGGAAAGATTACAGA
TCGAATGATATGTGCTGCAAACTTCGATACAACCAAGAATCAGTCAGGTT
GTCATGGTGATTCAGGTGGTCCATTCGTTTGTCAAAACAGTAATGGTTCA
TGGACACTACATGGAGCTGTCAGCTGGGGATCACCAAAATGTGACACAAA
AGATGCAATTAGTGTCTTTGCAAGAGTTGGTCAATTCAGAGACTGGATTG
AGAAAACTATTCAATAAGAGATCATGACCGAAGAATAAATGAAGGCGAGC
AGATCATAAAAGTATCAAAAGCTGTTGTCCACTATAGTTATGAAAATTCA
AGGGAATCTAAGTTTGATAACGACATTGCTTTATTACAATTGGAACAACC
AATTAAATTCGGACGAAATGTTCAACCAGTCTGTTTACCAAGCCAAGGAG
ATGCTCCAAAAGTTGGTAGCAAATGTTACATCACCGAAGGTGACTGCGTT
GACCTAAACGTGAAATGTCCAATTTGGGCAGGTGTTTGCTACACTAACTG
GTATGTCAAAACCAATTGTAAGAAATCATGTGGATTCTGTCCTGGCGTTA
CAAATCCACCTGTTACTAACCCGCCCTTAAGCAGTTGTGGACGCCCGCAA
GTTGCAATGTCCAGAGTTGTCGGTGGAAAAGATGCTAAAGCTCATTCATG
GCCATGGCAAATCGGACTTCACCGCAACGGTGGATTTATGTGTGGAGGTT
CAATCATCAACAGCCGATGGGTTGTTACTGCTGCTCATTGTGTTAATGGA
ATGTCTTTGCTGACCACAAACTTTACTGTCAAATTAGGTTGTCAAGATGG
TGTAGATTTTTGTGAGGAATATTATTCTAAAGATAAAGATTATTATTGTT
CCCATGAATTCCTGAAGATCAATTGTAAGAAATTTTGCGGATTGTGTGTT
GTAACAACCCCATCACCAGATGAAACACATCATACTTTTGGTTACATTTT
TCTCATTGACACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004381XLOC_004381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007727-exon-sc0000079-1575043694:170608..170701TCONS_00007727-exon-sc0000079-1575043694:170608..170701Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1575043694:169937..170068TCONS_00007727-exon-sc0000079-1575043694:169937..170068Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1575043694:168802..169152TCONS_00007727-exon-sc0000079-1575043694:168802..169152Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1575043694:168204..168422TCONS_00007727-exon-sc0000079-1575043694:168204..168422Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1575043694:167112..167772TCONS_00007727-exon-sc0000079-1575043694:167112..167772Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1510915933:170608..170701TCONS_00007727-exon-sc0000079-1510915933:170608..170701Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1510915933:169937..170068TCONS_00007727-exon-sc0000079-1510915933:169937..170068Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1510915933:168802..169152TCONS_00007727-exon-sc0000079-1510915933:168802..169152Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1510915933:168204..168422TCONS_00007727-exon-sc0000079-1510915933:168204..168422Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1510915933:167112..167772TCONS_00007727-exon-sc0000079-1510915933:167112..167772Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1491911889:170608..170701TCONS_00007727-exon-sc0000079-1491911889:170608..170701Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1491911889:169937..170068TCONS_00007727-exon-sc0000079-1491911889:169937..170068Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1491911889:168802..169152TCONS_00007727-exon-sc0000079-1491911889:168802..169152Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1491911889:168204..168422TCONS_00007727-exon-sc0000079-1491911889:168204..168422Clytia hemisphaericaexon
TCONS_00007727-exon-sc0000079-1491911889:167112..167772TCONS_00007727-exon-sc0000079-1491911889:167112..167772Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007727-proteinTCONS_00007727-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:167112..170701 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	4.44262e-09	1.34712e-07	2.79245e-07	0	8.92545	8.35	7.09276	24.3597	3.22242	2.51735	15.0861	10.2462	27.8172	27.9306	18.9993	26.5944	39.2389	40.1048	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR003582ShKT_dom
IPR001254Trypsin_dom
IPR033116TRYPSIN_SER
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00007727 vs. Swiss-Prot (Human)
Match: OVCH1 (Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.728e-52
Identity = 103/250 (41.20%), Postives = 146/250 (58.40%), Query Frame = 1 
Query:  385 PQVAMSRVVGGKDAKAHSWPWQIGLHRNGGFMCGGSIINSRWVVTAAHCVNGMSLLTTNFTVKLGDHDRRINEG-EQIIKVSKAVVHYSYENSRESKFDNDIALLQLEQPIKFGRNVQPVCLPSQGDAPKVGSKCYITGWGKIGHQGGSHTILQQLGLTVQSKETCAK--HNSKIGKITDRMICAANFDTTKNQSGCHGDSGGPFVCQNSNGSWTLHGAVSWGSPKCDTKDAISVFARVGQFRDWIEKTI 1125
            PQ    R+ GG++A  H WPWQ+GL   G + CGG+IIN  W++TAAHCV  +     ++T+  GDHDR + E  EQ+ +    +VH   E+     +D+DIAL+QL  P+++   V+PVCLP   +       C +TGWG I   GG  + LQQ+ + V  +E C    +++  G IT++MICA  F  +  +  C GDSGGP VC++ NG + L+G VSWG+  C       VFARV  F DWI+  I
Sbjct:  568 PQWLSRRIAGGEEACPHCWPWQVGLRFLGDYQCGGAIINPVWILTAAHCVQ-LKNNPLSWTIIAGDHDRNLKESTEQVRRAKHIIVH---EDFNTLSYDSDIALIQLSSPLEYNSVVRPVCLPHSAEPLFSSEICAVTGWGSISADGGLASRLQQIQVHVLEREVCEHTYYSAHPGGITEKMICAG-FAASGEKDFCQGDSGGPLVCRHENGPFVLYGIVSWGA-GCVQPWKPGVFARVMIFLDWIQSKI 811

HSP 2 Score: 138.272 bits (347), Expect = 2.232e-34
Identity = 88/256 (34.38%), Postives = 127/256 (49.61%), Query Frame = 1 
Query:  397 MSRVVGGKDAKAHSWPWQIGLHRNGGFMCGGSIINSRWVVTAAHCVNGMS-LLTTNFTVKLGDHDR-RINEGEQIIKVSKAVVHYSYENSRESKFDNDIALLQLEQPIKFGRNVQPVCLPSQGDAPKVGSKCYITGWGKIGHQGGSHTILQQLGLTVQSKETC--AKHNSKIGKITDRMICAANFDTTKNQSGCHGDSGGPFVCQNSNGSWTLHGAVSW------GSPKC---DTKDAISVFARVGQFRDWIEKTI 1125
             SR+   +++     PWQ+ L  +    CGGS+I    VVTAAHC++ +S     N TV  G++   + ++ EQ I VSK + H  Y NSRE     DIALL L+  +KFG  VQP+CLP   D  + G  C  +GWGKI        +LQ++ L +     C     +  +  +   M+CA   D       C GDSGGP VC+   G W L G  SW      GS        K ++ +F++V +  D+I + +
Sbjct:   44 FSRISSWRNSTVTGHPWQVSLKSDEHHFCGGSLIQEDRVVTAAHCLDSLSEKQLKNITVTSGEYSLFQKDKQEQNIPVSKIITHPEY-NSRE-YMSPDIALLYLKHKVKFGNAVQPICLPDSDDKVEPGILCLSSGWGKISKTSEYSNVLQEMELPIMDDRACNTVLKSMNLPPLGRTMLCAGFPDW--GMDACQGDSGGPLVCRRGGGIWILAGITSWVAGCAGGSVPVRNNHVKASLGIFSKVSELMDFITQNL 295
The following BLAST results are available for this feature:
BLAST of TCONS_00007727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OVCH15.728e-5241.20Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2[more]
back to top