TCONS_00007730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007730
Unique NameTCONS_00007730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007730 ID=TCONS_00007730|Name=TCONS_00007730|organism=Clytia hemisphaerica|type=transcript|length=633bp
caGGCGTGTGATCCCACTCATTAAATTACATATACAGACTGTGTTagatt
cttttttctctttgcctttcaatttttaagtttcgcttaaaaaattttgc
ttcgcaatttttatctcaaaaaacttttttcttcgcCAAAACCTGAAATT
GCTTCGCAATTTGCGAAGTGCgaagctataattcgaaccctgaaTTCCTA
TGGCTACTCAATCGACTTCTTCAGCAATCACCACATCACCATCTGGGAAA
AGATCTCGATTCCAATACACCTCCATTGGAACATCGCCGCCATCAAAGAA
GCGATCAGAAGATGGTAAAATTGTCAGCCCAatcaaagctttttttaata
aagatGGGAAGGTGATTGTGAAGAACATGCCGCAACGTCAACATGACCCA
TCGACACTCAAGCCAGACAATCTAAGCTCATCAACGAAACCACCGAGACA
AACAGTGCAAGCGGAACAGCATAGCAATGTTCCGAAATCAGTATATTCGC
AAACAAGAGGGTGTATAGAAATGGCGGATATCGCTAGCAAGCAGATGGGG
TTTTTTATGGCAAATAACGATGACGAGGTGTACGGACCAATGCTCAATAA
CATTCAGGACTTCATGGGCGGGTTTGACCTTTT
Run BLAST on NCBI

transcript from alignment at sc0000079:283890..288027-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007730 ID=TCONS_00007730|Name=TCONS_00007730|organism=Clytia hemisphaerica|type=transcript|length=4138bp|location=Sequence derived from alignment at sc0000079:283890..288027- (Clytia hemisphaerica)
CAGGCGTGTGATCCCACTCATTAAATTACATATACAGACTGTGTTAGATT
CTTTTTTCTCTTTGCCTTTCAATTTTTAAGTTTCGCTTAAAAAATTTTGC
TTCGCAATTTTTATCTCAAAAAACTTTTTTCTTCGCCAAAACCTGAAATT
GCTTCGCAATTTGCGAAGTGCGAAGCTATAATTCGAACCCTGAATTCCTA
TGGCTACTCAATCGACTTCTTCAGCAATCACCACATCACCATCTGGGAAA
AGATCTCGATTCCAATACACCTCCATTGGAACATCGCCGCCATCAAAGAA
GCGATCAGAAGATGGTAAAATTGTCAGCCCAATCAAAGCTTTTTTTAATA
AAGATGGGAAGGTGATTGTGAAGAACATGCCGCAACGTCAACATGACCCA
TCGACACTCAAGCCAGACAATCTAAGCTCATCAACGAAACCACCGAGACA
AACAGTGCAAGCGGAACAGCATAGCAATGTTCCGAAATCAGTAAGAGTTT
CTATTCACTTTTCTATTCACGTTTCTTTTCCAATCTTTTGATGGGGGATA
GAAATACTATTATTTTGGGGTTAACCTTTATGTACTTAGGGGGAAAAATC
ACTTCACTAAGTTTGCTTGAAATATACTTAATCCAATTATTTAAGCTCAT
GAAGCTGATAATAGCTTGGAACTGCTATGCAATTTATATATGAATTACTT
CTTTTTTCTAGGACAATTTTTTTTCATTTCATAAGTAAAATATCTTTTAT
GTATTTCCACCAATAAGCTCTGGGTACACATTAAATTTTTTTTGATTTTA
TTTGGTAAAAAATTCTTGATGATTATTTTGCATTTTAGCCCCAAAAGTCT
CCCCCGTTATTTGCCAGACAGCCTAATGATTACACCCGAAGAGTCCCAAA
ACGTTGGTTAGAATCTTTGAACCAAACAGAGGCTCAATGTTTGGGACAAG
AGCTTTTTTCGAAAACTGAAGGTGAAGATAGGATGAAAAGACCTACGAAA
CTTTGGCATCATCCGCCGGAAATCAATGATGATGCTGTCAAGAAACCCAA
TTCAGCGGAGTATAATATGCGGCGACTGTTTTTGTGGATGCCAAGAAAGA
TGTTGGCATTTGAGTTTGATTGTCCTAGATCAGAATGAAATGGTAAGGGA
TTAACATCTAAAGGACTTTACAACAGGCTACGTCATGTACTTGATGTCAA
TGATTTTTATTATTTGGCAACTGAAAAGCTATATTGTCGTCGCTGCGGGA
AGGACTTTCAAAGTTATGATTCTCGTCTTATTGAGCAACTACCTTTGCAT
AAGCAACTCCTGTTTCCAGCAGTTCTGACAGGTGTTTACGCATGCGATAA
ATCCTTGATATCTTTGATGAAATCTCGTACATTAGGCAATAGCTCTCATG
CAATGAAAAATTCCATACATGAAATGCATAGCGAACATTGGGTCAAACAA
AACATGATTTACCTAGATCACTGCAAGAAGTACAAGGATAAGGTATCATT
TTTTAGAGGTGCCGAGGAGATTGAGTTTTTGTGTGTTGAAAGGGGATACT
CTTTTCTCCAAATGATATGTGCCCCCAAGAGAAATCATTTGAAACCAGAT
CATCTAGAAACACTCCTTTTACAGTGAAAAAGTCTAAAGATTACTCAAGC
GAAATATAATTTTTGGAAAAATAGAAACTTTTAACTAGTCAAGGACACAT
TACAATTATTACATTGCATTTACACAGTCTCAAATTTTATGTTTTTATGA
TTTTGAAGATTATAGATCCACTATGATTAAGGTTTGGTCTTTTTTTTAAA
TCTTTCACAAATAAAGTGTCATACTGATCTTGTAATTCTGTACTTCTGGT
CAAGCATTACATGCTTTTTTGATTTAGTATTTCTTCATCTTGTGTGTTTA
TTTTAGGATCCTTATATTCAGTATTTTTAAAGTTGTTTTGATTTTATTTA
GGATTTTAATTTTTCATTTCATTGTTTTTTACTGCTTTTCTAAACATGTT
TTGTTTACATTAACCCATTTTCGTTTAATTTTGTCTAGTATTCCTTTTGC
AGCAAAATTTTTACGTTTGTGTAAGTTTGAAATTTGAGCAATTTATATGA
ATATGTGGGGGGAACTGATACTTTCAGAATTTTCTGGGGGGAAAGCAAAA
AAGAGGGGGGAAACTAAAAAACTGAAAAGTCATAGGGGAAAAAAAAGAGG
GGGAATAATTAAAAAAAATCAAGAATTTGGTGGGGGAACAAACCCTGGAA
GACACTATGCTATTATATTAACGAGGACTACTCAGATGAAACTAATTTAA
TTCGAAAAGGACTATTCAGAGAAATGAANGAACAAACCCTAGAAGACACT
ATGCCATTATATTAACGAGGACTACGACTCAGATGGAAAAGGACTATTCA
GAGAAATGAGACAAGCAAGGGAAAGTGGTAAGTTTGCTAAAGTGGTCTAC
GACAAAATCATTATCAGAAACTTTAGACCATCTCGCTAGTTTTAGTTAAT
TTCTCTAATTATTTTTATTCTTCGTAATTTTTTCCAAAAATCACAATGGG
TGAATCCTCATTTTCTTTTTTGAATAAAAATCAACTACCAACTCTTAGTG
ATTCGAATGATCCAGACGCTAACTTTTATGAAAAAATTTCTTTTGAAACT
CCATTTTTGACCCTAAACTTAGTAAGAGAGAAATAGCCTGTCTCAACAAA
TTATATCGTGTTCACTTATCTTCAGTTCCTTTGTTTTTGCTTTCAAATAG
TCTACTCACAGTACGTGCGTTTTTTTCTGAAGGATTAGTGAATATATAAG
GTTATTTTCGGTTCAACGATTAAAAAATAATAATAGAATCTGTAAATTCA
AGGTGTTCTCGCAGGTACATTTTAATTTGTAATTAAAGGACTCTACTTTA
CCCCTGACGCGAGAGGCAAAGATACGGAAATTATTCGTCACGCTGTTAGG
TCATATTCTTCAACAGCAAGACGAGACGAAAAGCTCCCGAAAGTTCTATG
GTAAAAGAAGGCGAATATATTGTAAAATTCTTTATCGATGTAGGGTAATT
CCATGTCATCCAAAATTTAAAAAATCTAGACACCATTAGCCCTCAGATTT
TCTTCAATTTTTTAACCATATGAAGATGTTCATGAGAAAAGGCAATCCTG
AAAATTTCACCTACTAACTCCCAACAGATCCGTTTTTATGGCATTTTGAA
ATTTGGGTGTTTTTAAATCAGGGTGTGCCCGGTCGTTATTTTTAGACGCC
CTTTTTTAATATTACTCCTGTTCCAAACAAGCTATGAAGCTGAAAATCTG
TACAGGTAAGTTATTTACCCCAAGGAATCCGATGAAAGCATCAGAAATAC
CCAAAAATGAATTATTCAAAAGTTACAACTAAATTTCAAAAATTGGGACT
GGAAAGTCCATTTTTCCCAAAAAACAAATGTGGGACAAAATATTTTGAAA
CAATTTTTTCATTCTTTTGTTTTGATAATAATATTGCTCTGGGCAAAAAA
TCTGATAAAGTTCTTTCCTACTTTGCTCTCAATGCTACTTTGAAGTACTG
GTGGCAATACATTCGTCTACAGAAACAATATAAAACTGAGGAGGCCCGGC
CAGGGGGTAAACGAGCTGTTCTACAAATCCTTACAGGATACAAGGACCAT
TGAGACGTATATAAATGTGTACACTGTAGAGACTACAGGTAAATGGAGTA
GCAGGGTAGCCAAGTTAAAGGACTGGTATGGAGCAAGTGAAGCTGCATAT
ATTGAGAAAGTCCGCAGGGATGAATGGACACATTATTCCATGAGGCTTAG
TGATTTGTTCGAAGGAGTCGTCACCGCCCTTTCGGCCACAGATAAGGACC
GATTGAGTATTTTGCTCACTTTGAAAAGGAGTTTACCAAAAAGCTACCAT
ATGGCGGATTGGTGAGTAGGATATCGATCATTAATCTTTAATAAAATGAA
TTAAGATTTGAAAACGCATATTTGTCATACCCGTTCTTCTTTCAGGTATA
TTCGCAAACAAGAGGGTGTATAGAAATGGCGGATATCGCTAGCAAGCAGA
TGGGGTTTTTTATGGCAAATAACGATGACGAGGTGTACGGACCAATGCTC
AATAACATTCAGGACTTCATGGGCGGGTTTGACCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004383XLOC_004383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007730-exon-sc0000079-1575043694:287538..288027TCONS_00007730-exon-sc0000079-1575043694:287538..288027Clytia hemisphaericaexon
TCONS_00007730-exon-sc0000079-1575043694:283890..284032TCONS_00007730-exon-sc0000079-1575043694:283890..284032Clytia hemisphaericaexon
TCONS_00007730-exon-sc0000079-1510915933:287538..288027TCONS_00007730-exon-sc0000079-1510915933:287538..288027Clytia hemisphaericaexon
TCONS_00007730-exon-sc0000079-1510915933:283890..284032TCONS_00007730-exon-sc0000079-1510915933:283890..284032Clytia hemisphaericaexon
TCONS_00007730-exon-sc0000079-1491911889:287538..288027TCONS_00007730-exon-sc0000079-1491911889:287538..288027Clytia hemisphaericaexon
TCONS_00007730-exon-sc0000079-1491911889:283890..284032TCONS_00007730-exon-sc0000079-1491911889:283890..284032Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:283890..288027 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264991	0	0.159909	0.11731	0	0.326383	0.272638	0.5446	0.000380487	0.819929	0	0	0.201108	0	0	0.042971	0	0.246088	0	0.212194	0.384865	0	0.567655	0.220848	0	0	0	0.305666	1.16129	0.825833
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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