TCONS_00007751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007751
Unique NameTCONS_00007751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007751 ID=TCONS_00007751|Name=TCONS_00007751|organism=Clytia hemisphaerica|type=transcript|length=566bp
AATACAATGAACCAACTGGTGAAAACAATGAGATTGCCAGTCATTGTCGT
CTTCTTATTGATTGTTGTACAGATCAATGTTTGCCAAGGCGATGACTGTG
AATATTTCAAGCCTTGCAATGCTGCATCAGATTGTCATAAATGTGGTGAA
ATAGTTCTTGGGTGCtccaaatttacccaaaatacCAAAATCTGCCAACC
TGACCATGGAAGTGTTATGTATTGGGGAGGTAGAAGACGTAAAAGAGATT
TGGAATCTATGCTTTATTATTTCGATATTTTACAAGCAGCAAAGGTGCTG
AATCGGAAAAGATAAATTGAATGAGACTTAAAAAGACGATGAACTTCAAG
GATTTCAAGGGAATCTTGGAAAAAGCAAAGAACTTTGACGCAGCCTTTTG
CAATTCCATCACCAGATAAAATGAGAATCGATTATTCTTTCAAGAAAGAT
TGGTTTGAAGTTGAAAACACTTGAATTGATACCATCGATAAAATGTTGGA
GTATTCGTATCGCTCTTAATTGCGTGGTCCCACCAACTCTTTTTATACAT
TGACTGATAATCCAAC
Run BLAST on NCBI

protein sequence of TCONS_00007751-protein

>TCONS_00007751-protein ID=TCONS_00007751-protein|Name=TCONS_00007751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
NTMNQLVKTMRLPVIVVFLLIVVQINVCQGDDCEYFKPCNAASDCHKCGE
IVLGCSKFTQNTKICQPDHGSVMYWGGRRRKRDLESMLYYFDILQAAKVL
NRKR
Run BLAST on NCBI

transcript from alignment at sc0000079:218278..218843

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007751 ID=TCONS_00007751|Name=TCONS_00007751|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at sc0000079:218278..218843 (Clytia hemisphaerica)
GTTGGATTATCAGTCAATGTATAAAAAGAGTTGGTGGGACCACGCAATTA
AGAGCGATACGAATACTCCAACATTTTATCGATGGTATCAATTCAAGTGT
TTTCAACTTCAAACCAATCTTTCTTGAAAGAATAATCGATTCTCATTTTA
TCTGGTGATGGAATTGCAAAAGGCTGCGTCAAAGTTCTTTGCTTTTTCCA
AGATTCCCTTGAAATCCTTGAAGTTCATCGTCTTTTTAAGTCTCATTCAA
TTTATCTTTTCCGATTCAGCACCTTTGCTGCTTGTAAAATATCGAAATAA
TAAAGCATAGATTCCAAATCTCTTTTACGTCTTCTACCTCCCCAATACAT
AACACTTCCATGGTCAGGTTGGCAGATTTTGgtattttgggtaaatttgg
aGCACCCAAGAACTATTTCACCACATTTATGACAATCTGATGCAGCATTG
CAAGGCTTGAAATATTCACAGTCATCGCCTTGGCAAACATTGATCTGTAC
AACAATCAATAAGAAGACGACAATGACTGGCAATCTCATTGTTTTCACCA
GTTGGTTCATTGTATT

Coding sequence (CDS) from alignment at sc0000079:218278..218843

>TCONS_00007751 ID=TCONS_00007751|Name=TCONS_00007751|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000079:218278..218843 (Clytia hemisphaerica)
TTATCTTTTCCGATTCAGCACCTTTGCTGCTTGTAAAATATCGAAATAAT
AAAGCATAGATTCCAAATCTCTTTTACGTCTTCTACCTCCCCAATACATA
ACACTTCCATGGTCAGGTTGGCAGATTTTGgtattttgggtaaatttgga
GCACCCAAGAACTATTTCACCACATTTATGACAATCTGATGCAGCATTGC
AAGGCTTGAAATATTCACAGTCATCGCCTTGGCAAACATTGATCTGTACA
ACAATCAATAAGAAGACGACAATGACTGGCAATCTCATTGTTTTCACCAG
TTGGTTCATTGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004398XLOC_004398Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007751-exon-sc0000079-1491911889:218278..218843TCONS_00007751-exon-sc0000079-1491911889:218278..218843Clytia hemisphaericaexon
TCONS_00007751-exon-sc0000079-1510915933:218278..218843TCONS_00007751-exon-sc0000079-1510915933:218278..218843Clytia hemisphaericaexon
TCONS_00007751-exon-sc0000079-1575043694:218278..218843TCONS_00007751-exon-sc0000079-1575043694:218278..218843Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007751-proteinTCONS_00007751-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:218278..218843 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0993774	0	0.22504	0	0	0	0	0.119612	0	0.10373	0.805461	0	0.46265	0	6.99729	1.51395	0	0.0764649	0	0.110545	0	0	0	0.103592	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top