TCONS_00007758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007758
Unique NameTCONS_00007758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007758 ID=TCONS_00007758|Name=TCONS_00007758|organism=Clytia hemisphaerica|type=transcript|length=498bp
AGAATTGAATGAGTCTTGTAGTGATGACATTAAGAGCACTATGGATTTTA
TTGACCAAATGTATGTTGAATCTGAGGTGAAAAAGGCTTCAGACAATCTT
AAAGCGTTCATATGTGATGAAATCAAGAAGAGTTCAGGATCCAAACCACA
GCAGGGGAACGAGGATACATCTGGTATTATTAAATGTAaggataaaatga
taaatattttggaaaatcaaatcattttttatgaagaagAAATTCGTAGA
AAGAATAATCTCATAGACTCTCTTTTACAAGGCTGTAATACTcatcaaaa
catttctttttttcgcaaaaattgtgaaaatgttACACATCATCCTATTA
AGTCGACGTGTGATGCAAAAAGGGATGTTATTAACAACGAAAAAGTTACT
ATCAGAAATGACAAAGAAAATCTTAATGGGAAATCAATTAGTCATCATCA
TAGCCTTAATACAAGTGTAAATGGTTTTcagagagagaaagagaaagT
Run BLAST on NCBI

protein sequence of TCONS_00007758-protein

>TCONS_00007758-protein ID=TCONS_00007758-protein|Name=TCONS_00007758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
ELNESCSDDIKSTMDFIDQMYVESEVKKASDNLKAFICDEIKKSSGSKPQ
QGNEDTSGIIKCKDKMINILENQIIFYEEEIRRKNNLIDSLLQGCNTHQN
ISFFRKNCENVTHHPIKSTCDAKRDVINNEKVTIRNDKENLNGKSISHHH
SLNTSVNGFQREKEK
Run BLAST on NCBI

transcript from alignment at sc0000079:261095..261592

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007758 ID=TCONS_00007758|Name=TCONS_00007758|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at sc0000079:261095..261592 (Clytia hemisphaerica)
ActttctctttctctctctgAAAACCATTTACACTTGTATTAAGGCTATG
ATGATGACTAATTGATTTCCCATTAAGATTTTCTTTGTCATTTCTGATAG
TAACTTTTTCGTTGTTAATAACATCCCTTTTTGCATCACACGTCGACTTA
ATAGGATGATGTGTaacattttcacaatttttgcgaaaaaaagaaatgtt
ttgatgAGTATTACAGCCTTGTAAAAGAGAGTCTATGAGATTATTCTTTC
TACGAATTTcttcttcataaaaaatgatttgattttccaaaatatttatc
attttatcctTACATTTAATAATACCAGATGTATCCTCGTTCCCCTGCTG
TGGTTTGGATCCTGAACTCTTCTTGATTTCATCACATATGAACGCTTTAA
GATTGTCTGAAGCCTTTTTCACCTCAGATTCAACATACATTTGGTCAATA
AAATCCATAGTGCTCTTAATGTCATCACTACAAGACTCATTCAATTCT

Coding sequence (CDS) from alignment at sc0000079:261095..261592

>TCONS_00007758 ID=TCONS_00007758|Name=TCONS_00007758|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0000079:261095..261592 (Clytia hemisphaerica)
tttctctttctctctctgAAAACCATTTACACTTGTATTAAGGCTATGAT
GATGACTAATTGATTTCCCATTAAGATTTTCTTTGTCATTTCTGATAGTA
ACTTTTTCGTTGTTAATAACATCCCTTTTTGCATCACACGTCGACTTAAT
AGGATGATGTGTaacattttcacaatttttgcgaaaaaaagaaatgtttt
gatgAGTATTACAGCCTTGTAAAAGAGAGTCTATGAGATTATTCTTTCTA
CGAATTTcttcttcataaaaaatgatttgattttccaaaatatttatcat
tttatcctTACATTTAATAATACCAGATGTATCCTCGTTCCCCTGCTGTG
GTTTGGATCCTGAACTCTTCTTGATTTCATCACATATGAACGCTTTAAGA
TTGTCTGAAGCCTTTTTCACCTCAGATTCAACATACATTTGGTCAATAAA
ATCCATAGTGCTCTTAATGTCATCACTACAAGACTCATTCAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004405XLOC_004405Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007758-proteinTCONS_00007758-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007758-exon-sc0000079-1491911889:261095..261592TCONS_00007758-exon-sc0000079-1491911889:261095..261592Clytia hemisphaericaexon
TCONS_00007758-exon-sc0000079-1510915933:261095..261592TCONS_00007758-exon-sc0000079-1510915933:261095..261592Clytia hemisphaericaexon
TCONS_00007758-exon-sc0000079-1575043694:261095..261592TCONS_00007758-exon-sc0000079-1575043694:261095..261592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:261095..261592 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.158697	0.693457	0	0.723078	0.56852	0.640191	0.167289	0.224324	0	0	0.0915649	0.575315	0	0.148831	0.78625	0.465713	0.114299	1.1402	1.19612	1.041	0.589053	0	0	0	0.13465	0.194675	0.202382	0.204071	0.164772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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