TCONS_00007787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007787
Unique NameTCONS_00007787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3125

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007787 ID=TCONS_00007787|Name=TCONS_00007787|organism=Clytia hemisphaerica|type=transcript|length=3125bp
CAACCATTTCAAAATCCACAAGCCCCAATCAACAAAATAACATCTCCTCG
AGTGGTGCCATCTTCTCAACAGATAACTCCTGGCCAAATAACTCCATCAG
ATTCTGTCCTATCTAATTATCAATACCAAATTGAAACACTACAACGGAAA
CTTCGAGTTGCAACAGACTTGTGTACCGAGCAAGAAATGGAGTCTAAAAC
TTCGTTGAAAGAAGCTGAACTGAATTTCAGGCAATTACTTACACAGCGTG
ATAGTTTCATCAAACTTAGGGAATCAGAGTCAAACAATCAACAGCAATTG
ATTTCCCACTTGCAATTGACACTTGAAAAGCTGGAGATGGACAAAGCACA
TTATGAAGAAACCATCCAACAATTGAACCAATTCTCTAAAGTACAAAAAA
ATGAGATTGATTCACTTAAGAAACAGTTGGACACATACAACAAAAGTTTC
AACAGTCTATCACTCATACTATTACCAGATATGAAAAGTAGTTTGGGTGG
TAAGTTTGAAGACATGAATTCCATTTCAGTCACCAGTATAGCAAATATGG
TTGAGAAGCTTTTGTTATGTCACCGGAAACAAGACGAAATGATGAAGTTC
AAGATCCAAAATTTGGAAGGAAAATTATCTGATCAAGATAAATCAAGTGA
AGAGAAGCTGAAATACGAAAAGAGGTTCATTGAAGTTCGCCAACAAGAGC
TTGTTGGTCAAATGGAGAAATCCCTGCAAGCTAAGGAAACTGAAATCACA
TCTTTGAAAGGTTCTTTACAAGCCCTTGAAACTAAATATCAAAATGCTTT
GAAACGTTTCAAGGAAGAAATTCTGAAATATAAAGCTTCAATGGCAGAAA
GTGAGAAACTGTTTGAAACGAAATACAATGAGATTACCGATCAAAAAGAC
AAAGCGGTTAAGAAGTTGACCAAATTGCAAAATGGGCAACATGATGTAAG
CAACCTCAACCATACCATGAAAactgaattgaaaaatcttcgCGAGAAtg
ttaacaagaaaacaaaagaatattcAGATGCTAAACAAGAGAAGAAGAAA
GCAGAAAAGGAAACTGAGAAATTCAAACAGAGAATCAAGGAAATGGTACT
AGCGGACGAACAAAAGTCTTTGGAATCAAGAACCACCATCAGCAACCTGG
AGGACCATTTAAGCCACCTTGAGGTTGAATATGAAAACCTTCAACTTTAT
GTTCAAGAACTTACTGAAAGACTACGCATGCTCCCTCAAGAAATCGAATC
ACAGGTTCAAGGGGACGAGCAACAGAAATATGAAGCTAAAATGCAAGAGA
TTAACAAGCTAATAGAAAACCATAAATCTGTTTTGGAAAATGCAAACATT
GAGATTGAAAGCAAAAGTCAGCTAGTAAAAGCTGGTCATGATCAGATCAA
ATTGCTCCAGAAGAAAGTCGAATCTTTGAAAAGTGACAATGCAAAATTAA
AAGAGAAGAACAAGGAACTTGAATCAAAGCTTGGCCAGCGCGAGACGCGT
CTGGTAGACTTACAGCTTGTGGCCACAGAATCTAAAGAAGCTCTGAAAGC
TTACAGTACCAAAGAAATGCAAAATCGAAAAGCATTAGAAtgttcacaaa
aaatgaatctaCAGTTTCAAGGGAAAGTCGATAATATGCATAAAGAGAAG
GTCGACCTGGAGGTATCTTATGATTTACTGAAGAAACAGTTCCGTAAGGT
AGAAGAGGATATGAAAAAGTTGGATCAAAAAATTCGCTCACAAACTCAAG
AGATTGATACCGTCACAAAAGATCGTAAAGCCATTGCTaagaaactgaaa
gaaaaaaatgacgcCTTGATCTCCATGCAACAGAAACACGAAATCAACTC
CAAGAACATTTGTATGGTCAAGGAGAGTaatttcgagttacaaaaatCAT
GTGAAGATCTTGTCAAACACAACACCAATTTGTCCAGTGATTTGAGATCG
TTGGAGGAGGCAAAGTTCAAATTAGAGAAACTTCTCACAGAGAAAGAAGT
ATTGAAGGATCAAGAGGTGGAAAACTTGCTGCAACGTTTACAAGGTTCTG
AAGCTGATATCAACAGGTTAAAGAAACTGCTGAAGAGATTTGAATCATCT
GGTAATACACAAGCAAAGATTGCCAGCATGTCTCAGAAAGCTGTCACAAA
ACAAAGAGATGAAGTGGACAGCATCAAAGTCAAACTGAATTGGATGAAAG
AAGCACTGGAAGTATCTGAGAAGACAAGATCAGAGCTCCAACAAGAGCTT
GAGCACAAAGAAGAAGGAATAACCGAATTGGAACACCAgctaaaaagaga
aaaggaGTCCGTTCACAACCTATCTATCAATTTGTCGCTTCAACAACAAG
AAACTAAAGGGCTTCATAAGGCTCTCGAACAGGGTCTTGGGAGACGAGGT
CAAATGCGTGATCAAGATAAACTGGAGCCATCAGAAATCAAATCATTACT
TGAAGATGTCCGAGGGCTTTTGtcttcaactttaaagaaatcgTCATCAA
GCAAGAAATCGCCCAATAGCCCTCGGTCACCGCGTCAACGAAGCAAAGTC
GACGACAAGTGGCTTACCAATAGTTTAAAACTTGGACGAAATTCAGAGAA
GTTAAATGAATATTTGAACAGTTTTGATCAGAATTCAACTTCTGGTTCTG
TGGTTGGAGCTTCTTCACCAATGAACTCGACACCGAATGGGAGAACTCGT
AAGAAGGTGACGATCGAGGAAGACCAATCATCTGTTTATTCATTTGATTA
CACTACTGATGAAGAGTCTGAATACCCCATTCAACATCCTATGCTTCGCA
AACATAAACAAGGTGGGACGGCCGCCAAGCGTTTACAGGAGAAGTTGAAC
AACTTGAAGAAGATGGGAGAAGACCTGACCAACAATAACAAAGacaTCGC
AAATTTGATGACAAAGCATTCCCAAAAACTCGAAAAACTGACAATAAGTT
GACCGAAAATTTTATTACCTAGAGttgtatttttaaaatgttaataTTAT
TTTTATCATCCTTAAATTATTTGAGATGTACATATTacatgttttgaaaa
ttatttatatACGAATGGAAGGattgattttaaatttgttattttaatga
atgAATGGATTACTTGATGTAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000080:14081..19530+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007787 ID=TCONS_00007787|Name=TCONS_00007787|organism=Clytia hemisphaerica|type=transcript|length=5450bp|location=Sequence derived from alignment at sc0000080:14081..19530+ (Clytia hemisphaerica)
CAACCATTTCAAAATCCACAAGCCCCAATCAACAAAATAACATCTCCTCG
AGTGGTGCCATCTTCTCAACAGATAACTCCTGGCCAAATAACTCCATCAG
ATTCTGTCCTATCTAATTATCAATACCAAATTGAAACACTACAACGGAAA
CTTCGAGTTGCAACAGACTTGTGTACCGAGCAAGAAATGGAGTCTAAAAC
TTCGTTGAAAGAAGCTGAACTGAATTTCAGGCAATTACTTACACAGCGTG
ATAGTTTCATCAAACTTAGGTAAAATCCTTCCCCTTTCAAACATTTCAAG
ATTAATAGAAAAGAGTGAAATGACATCAATCTGCTTGGTGTACATAAGGA
ATGACCATTTTGATTGTATTTAATCTATCCTATCGGGTGTGTcagaaata
agttaccctctttaaaataaaatttgtcgaCATCTATGAATCTCTAAAGA
ATGTAACTATTTCTATGATACACAAAAAAGAAAGGTTAACTTAAACTTTC
ATGTTGGATATTAATTCCGAACGTTTATTAATTAAGTCAAGTTTTGACGT
CATAATGTGATATTTTTCTGTCAGGCACAAATTACATTGTTTTGAGCCAT
TGTTTTGACttaataaaattaataaacggggggagggTCCTAATAAGGTT
GGAAAAAAACCCAGAAAATTAACAAGCAGTCACTAATTAGAGGACTTGAT
ACAGAAGAGATCTTCTTCATCTAACTTTTACTCAACTATTCTTCCTATTG
CAAGTTTATATTTGTTACTTTGATGCTTTCTTTTTTCCTTCTAAGGGAAT
CAGAGTCAAACAATCAACAGCAATTGATTTCCCACTTGCAATTGACACTT
GAAAAGCTGGAGATGGACAAAGCACATTATGAAGAAACCATCCAACAATT
GAACCAATTCTCTAAAGTACAAAAAAATGAGATTGATTCACTTAAGAAAC
AGTTGGACACATACAACAAAAGTTTCAACAGTCTATCACTCATACTATTA
CCAGATATGAAAAGTAGTTTGGGTGGTAAGTTTGAAGACATGAATTCCAT
TTCAGTCACCAGTATAGCAAATATGGTTGAGAAGCTTTTGTTATGTCACC
GGAAACAAGACGAAATGATGAAGTTCAAGATCCAAAATTTGGAAGGAAAA
TTATCTGATCAAGATAAATCAAGTGAAGAGAAGCTGAAATACGAAAAGAG
GTTCATTGAAGTTCGCCAACAAGAGCTTGTTGGTCAAATGGAGAAATCCC
TGCAAGCTAAGGAAACTGAAATCACATCTTTGAAAGGTTCTTTACAAGCC
CTTGAAACTAAATATCAAAATGCTTTGAAACGTTTCAAGGAAGAAATTCT
GAAATATAAAGCTTCAATGGCAGAAAGTGAGAAACTGTTTGAAACGAAAT
ACAATGAGATTACCGATCAAAAAGACAAAGCGGTTAAGAAGTTGACCAAA
TTGCAAAATGGGCAACATGATGTAAGCAACCTCAACCATACCATGAAAac
tgaattgaaaaatcttcgCGAGAAtgttaacaagaaaacaaaagaatatt
cAGATGCTAAACAAGAGAAGAAGAAAGCAGAAAAGGAAACTGAGAAATTC
AAACAGAGAATCAAGGAAATGGTACTAGCGGACGAACAAAAGTCTTTGGA
ATCAAGAACCACCATCAGCAACCTGGAGGACCATTTAAGCCACCTTGAGG
TTGAATATGAAAACCTTCAACTTTATGTTCAAGAACTTACTGAAAGACTA
CGCATGCTCCCTCAAGAAATCGAATCACAGGTTCAAGGGGACGAGCAACA
GAAATATGAAGCTAAAATGCAAGAGATTAACAAGCTAATAGAAAACCATA
AATCTGTTTTGGAAAATGCAAACATTGAGATTGAAAGCAAAAGTCAGCTA
GTAAAAGCTGGTCATGATCAGATCAAATTGCTCCAGAAGAAAGTCGAATC
TTTGAAAAGTGACAATGCAAAATTAAAAGAGAAGAACAAGGAACTTGAAT
CAAAGCTTGGCCAGCGCGAGACGCGTCTGGTAGACTTACAGCTTGTGGCC
ACAGAATCTAAAGAAGCTCTGAAAGCTTACAGTACCAAAGAAATGCAAAA
TCGAAAAGCATTAGAAtgttcacaaaaaatgaatctaCAGTTTCAAGGGA
AAGTCGATAATATGCATAAAGAGAAGGTCGACCTGGAGGTATCTTATGAT
TTACTGAAGAAACAGTTCCGTAAGGTAGAAGAGGATATGAAAAAGTTGGA
TCAAAAAATTCGCTCACAAACTCAAGAGATTGATACCGTCACAAAAGATC
GTAAAGCCATTGCTaagaaactgaaagaaaaaaatgacgcCTTGATCTCC
ATGCAACAGAAACACGAAATCAACTCCAAGAACATTTGTATGGTCAAGGA
GAGTaatttcgagttacaaaaatCATGTGAAGATCTTGTCAAACACAACA
CCAATTTGTCCAGTGATTTGAGATCGTTGGAGGAGGCAAAGTTCAAATTA
GAGAAACTTCTCACAGAGAAAGAAGTATTGAAGGATCAAGAGGTGGAAAA
CTTGCTGCAACGTTTACAAGGTTCTGAAGCTGATATCAACAGGTTAAAGA
AACTGCTGAAGAGATTTGAATCATCTGGTAATACACGTAAGCTTTGTTTA
ACTTATTATGGGAAGTGTAATGAATGAATGTAGAGCaagacaaaatataa
attttagtGATATTCTTATGGTGTAAGCTTTGGAAAAGGTTATGACTGCT
TTCTTTATCAAGTTTCAAGTCAACAGTCCATTTTAATAAACTTTTAATAT
TTATCTTTTTGTTGTGTTGAACATTTGACATCATGTTTGGTTTTTAGAAG
CAAAGATTGCCAGCATGTCTCAGAAAGCTGTCACAAAACAAAGAGATGAA
GTGGACAGCATCAAAGTCAAGtatgtttttcattttatttttagccAGGG
GTTGTGAACTttgtgaaattaattttgttttgttagTTCATAAAGAAGGT
TTAGGATGTGTTTAAAGGATATCATATAAATTATCTTCTACCATTCATTT
ACATAGCATTTTATTGACCCCCACGTCAGCATTCGATCCCCCAGGTCTAG
TGCAAATAAAAAGGTGATTGACTTCCTCACTCCCAGCTTCACCAACAGCC
ACCAGATATAATATACTTacttaaaaatattaaattcgAACTTTTTATAT
ATCACTTAGACTGAATTGGATGAAAGAAGCACTGGAAGTATCTGAGAAGG
TAATTCCAATTTGCTTTAGATTGAGGAGAGGCTTCGAATTCTTGTCATAC
CATTTTAATCATATATATGATGTGATTATATTGTTTCTTTTTCTGAACAT
ACCTGATAGCCTTTTTGTGGAAATTCATTTTAAGTAGTTACGGTGTAAGA
GTTACAGAGGTTTATgagacattgttaactgaagggacgagagaACTTTT
TTGAGTTAAGTAGACATTAGAGTGGTAgagattcgagttaaagagactct
actgtataaaAGACTTAATCTCGAATGActgaatctttttctttttccat
agACAAGATCAGAGCTCCAACAAGAGCTTGAGCACAAAGAAGAAGGAATA
ACCGAATTGGAACACCAgctaaaaagagaaaaggaGTCCGTTCACAACCT
ATCTATCAATTTGTCGCTTCAACAACAAGAAACTAAAGGGCTTCATAAGG
CTCTCGAACAGGTCTCTGCTCGTCTCATGTTCATTTTCTAAAGCTTCTTT
GCTTGATTCCATATCATGATTTTTTAGACTGATTatgtttttctcaattt
tggtTTTATTGGATCATAAGAGGCCCAAGTATTTCTTATAGCATTTTCTC
CCACTTTTTTAGGCCTCGATGAAGTATTCTGATGTTTACGCGCTAGTGGA
GAAACAAGAACAACGTTTTATCAAAGTATCATTACTTTTGTTGCCCTAAT
TCTTTCTACTGATATCTTAGTCCCGAAATGTAGTTTTATAAACTCGGTTT
TATAGGTCCGTGCATTTTGTAGATTGATTTAGATCCCacgtaaaattaaa
aagaaattaggtATTATGAAGTAGTGCAATCTAGAATTATTCACTTTTTC
ATAGGGTCTTGGGAGACGAGGTCAAATGCGTGATCAAGATAAACTGGAGC
CATCAGAAATCAAATCATTACTTGAAGATGTCCGAGGGCTTTTGtcttca
actttaaagaaatcgTCATCAAGCAAGAAATCGCCCAATAGCCCTCGGTC
ACCGCGTCAACGAAGCAAAGTCGACGACAAGTGGCTTACCAATAGTTTAA
AACTTGGACGAAATTCAGAGAAGTTAAATGAATATTTGAACAGTTTTGAT
CAGAATTCAACTTCTGGTTCTGTGGTTGGAGCTTCTTCACCAATGAACTC
GACACCGAATGGGAGAACTCGTAAGAAGGTGACGATCGAGGAAGACCAAT
CATCTGTTTATTCATTTGATTACACTACTGATGAAGAGTCTGAATACCCC
ATTCAACATCCTATGCTTCGCAAACATAAACAAGGTATGTACAGGACTTC
TATCACATACATGCTGGACCAGATCTTGCCTTGATTATATACCATTTTAA
ATTATCTATATCTCTTTCTTCTGTCAAGTTCCTGATGACTGGTCGCTCAT
GATTTTTTATGGTATCAGCTATGATATTTTTAATTCTCATGGTACTACTC
ACTGGCGTCAATCTTCTTGTAATTTCAGGTGGGACGGCCGCCAAGCGTTT
ACAGGAGAAGTTGAACAACTTGAAGAAGATGGGAGAAGACCTGACCAACA
ATAACAAAGGTTTCATAGCTAGCATGGTTGACGGTGTTTTGCTTGCTCCT
CATTGTAACACCAGTAAACTGAACTCCAAGTAGTTGTGTTGGGGCAGACT
AACAAGTAAGAGAATGTCGTTGGCAAGAAAGCAATGGACGAAATATATGA
TAACTATTAAGGAGTTGAAGTGAATAGAATCGGACGTTTAGACTTTCAGA
TGTTTCAACATTTTGTATCTCTATTCTAGTATTTAAAAGGTTGAAAGctt
gactttattttttttttgtgagaAAGTTGCGAGCTTGAAAAAATAGTTAT
TTGACAGTGTCAGAATAGGAAAAGAAAGCTCGAATCCCTGAATCAAGGGA
AAGTACCATCCACGTGACTCGATTTTAAATCAGGATTCCGGactgataaa
ttgtttttttctttccagacaTCGCAAATTTGATGACAAAGCATTCCCAA
AAACTCGAAAAACTGACAATAAGTTGACCGAAAATTTTATTACCTAGAGt
tgtatttttaaaatgttaataTTATTTTTATCATCCTTAAATTATTTGAG
ATGTACATATTacatgttttgaaaattatttatatACGAATGGAAGGatt
gattttaaatttgttattttaatgaatgAATGGATTACTTGATGTAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004431XLOC_004431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007787-exon-sc0000080-1491911889:14081..14349TCONS_00007787-exon-sc0000080-1491911889:14081..14349Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1510915933:14081..14349TCONS_00007787-exon-sc0000080-1510915933:14081..14349Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1575043694:14081..14349TCONS_00007787-exon-sc0000080-1575043694:14081..14349Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1491911889:14876..16716TCONS_00007787-exon-sc0000080-1491911889:14876..16716Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1510915933:14876..16716TCONS_00007787-exon-sc0000080-1510915933:14876..16716Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1575043694:14876..16716TCONS_00007787-exon-sc0000080-1575043694:14876..16716Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1491911889:16928..17000TCONS_00007787-exon-sc0000080-1491911889:16928..17000Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1510915933:16928..17000TCONS_00007787-exon-sc0000080-1510915933:16928..17000Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1575043694:16928..17000TCONS_00007787-exon-sc0000080-1575043694:16928..17000Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1491911889:17290..17329TCONS_00007787-exon-sc0000080-1491911889:17290..17329Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1510915933:17290..17329TCONS_00007787-exon-sc0000080-1510915933:17290..17329Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1575043694:17290..17329TCONS_00007787-exon-sc0000080-1575043694:17290..17329Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1491911889:17633..17791TCONS_00007787-exon-sc0000080-1491911889:17633..17791Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1510915933:17633..17791TCONS_00007787-exon-sc0000080-1510915933:17633..17791Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1575043694:17633..17791TCONS_00007787-exon-sc0000080-1575043694:17633..17791Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1491911889:18185..18614TCONS_00007787-exon-sc0000080-1491911889:18185..18614Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1510915933:18185..18614TCONS_00007787-exon-sc0000080-1510915933:18185..18614Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1575043694:18185..18614TCONS_00007787-exon-sc0000080-1575043694:18185..18614Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1491911889:18809..18889TCONS_00007787-exon-sc0000080-1491911889:18809..18889Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1510915933:18809..18889TCONS_00007787-exon-sc0000080-1510915933:18809..18889Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1575043694:18809..18889TCONS_00007787-exon-sc0000080-1575043694:18809..18889Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1491911889:19299..19530TCONS_00007787-exon-sc0000080-1491911889:19299..19530Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1510915933:19299..19530TCONS_00007787-exon-sc0000080-1510915933:19299..19530Clytia hemisphaericaexon
TCONS_00007787-exon-sc0000080-1575043694:19299..19530TCONS_00007787-exon-sc0000080-1575043694:19299..19530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:14081..19530 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.67756e-06	0.266114	1.02113	0.468346	5.6629	2.21123	0.622279	0.47285	0.1598	0.030295	0.489277	3.72984e-08	0	0.0274573	0.00197149	1.20187e-07	6.60434e-07	0.00177582	0	2.74938e-05	0	0.39069	5.88074e-08	0.529435	0.0231922	1.3452	0.000204628	2.06412e-08	0.707458	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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