TCONS_00007788 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007788
Unique NameTCONS_00007788
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007788 ID=TCONS_00007788|Name=TCONS_00007788|organism=Clytia hemisphaerica|type=transcript|length=3274bp
AACCATTTCAAAATCCACAAGCCCCAATCAACAAAATAACATCTCCTCGA
GTGGTGCCATCTTCTCAACAGATAACTCCTGGCCAAATAACTCCATCAGA
TTCTGTCCTATCTAATTATCAATACCAAATTGAAACACTACAACGGAAAC
TTCGAGTTGCAACAGACTTGTGTACCGAGCAAGAAATGGAGTCTAAAACT
TCGTTGAAAGAAGCTGAACTGAATTTCAGGCAATTACTTACACAGCGTGA
TAGTTTCATCAAACTTAGGGAATCAGAGTCAAACAATCAACAGCAATTGA
TTTCCCACTTGCAATTGACACTTGAAAAGCTGGAGATGGACAAAGCACAT
TATGAAGAAACCATCCAACAATTGAACCAATTCTCTAAAGTACAAAAAAA
TGAGATTGATTCACTTAAGAAACAGTTGGACACATACAACAAAAGTTTCA
ACAGTCTATCACTCATACTATTACCAGATATGAAAAGTAGTTTGGGTGGT
AAGTTTGAAGACATGAATTCCATTTCAGTCACCAGTATAGCAAATATGGT
TGAGAAGCTTTTGTTATGTCACCGGAAACAAGACGAAATGATGAAGTTCA
AGATCCAAAATTTGGAAGGAAAATTATCTGATCAAGATAAATCAAGTGAA
GAGAAGCTGAAATACGAAAAGAGGTTCATTGAAGTTCGCCAACAAGAGCT
TGTTGGTCAAATGGAGAAATCCCTGCAAGCTAAGGAAACTGAAATCACAT
CTTTGAAAGGTTCTTTACAAGCCCTTGAAACTAAATATCAAAATGCTTTG
AAACGTTTCAAGGAAGAAATTCTGAAATATAAAGCTTCAATGGCAGAAAG
TGAGAAACTGTTTGAAACGAAATACAATGAGATTACCGATCAAAAAGACA
AAGCGGTTAAGAAGTTGACCAAATTGCAAAATGGGCAACATGATGTAAGC
AACCTCAACCATACCATGAAAactgaattgaaaaatcttcgCGAGAAtgt
taacaagaaaacaaaagaatattcAGATGCTAAACAAGAGAAGAAGAAAG
CAGAAAAGGAAACTGAGAAATTCAAACAGAGAATCAAGGAAATGGTACTA
GCGGACGAACAAAAGTCTTTGGAATCAAGAACCACCATCAGCAACCTGGA
GGACCATTTAAGCCACCTTGAGGTTGAATATGAAAACCTTCAACTTTATG
TTCAAGAACTTACTGAAAGACTACGCATGCTCCCTCAAGAAATCGAATCA
CAGGTTCAAGGGGACGAGCAACAGAAATATGAAGCTAAAATGCAAGAGAT
TAACAAGCTAATAGAAAACCATAAATCTGTTTTGGAAAATGCAAACATTG
AGATTGAAAGCAAAAGTCAGCTAGTAAAAGCTGGTCATGATCAGATCAAA
TTGCTCCAGAAGAAAGTCGAATCTTTGAAAAGTGACAATGCAAAATTAAA
AGAGAAGAACAAGGAACTTGAATCAAAGCTTGGCCAGCGCGAGACGCGTC
TGGTAGACTTACAGCTTGTGGCCACAGAATCTAAAGAAGCTCTGAAAGCT
TACAGTACCAAAGAAATGCAAAATCGAAAAGCATTAGAAtgttcacaaaa
aatgaatctaCAGTTTCAAGGGAAAGTCGATAATATGCATAAAGAGAAGG
TCGACCTGGAGGTATCTTATGATTTACTGAAGAAACAGTTCCGTAAGGTA
GAAGAGGATATGAAAAAGTTGGATCAAAAAATTCGCTCACAAACTCAAGA
GATTGATACCGTCACAAAAGATCGTAAAGCCATTGCTaagaaactgaaag
aaaaaaatgacgcCTTGATCTCCATGCAACAGAAACACGAAATCAACTCC
AAGAACATTTGTATGGTCAAGGAGAGTaatttcgagttacaaaaatCATG
TGAAGATCTTGTCAAACACAACACCAATTTGTCCAGTGATTTGAGATCGT
TGGAGGAGGCAAAGTTCAAATTAGAGAAACTTCTCACAGAGAAAGAAGTA
TTGAAGGATCAAGAGGTGGAAAACTTGCTGCAACGTTTACAAGGTTCTGA
AGCTGATATCAACAGGTTAAAGAAACTGCTGAAGAGATTTGAATCATCTG
GTAATACACAAGCAAAGATTGCCAGCATGTCTCAGAAAGCTGTCACAAAA
CAAAGAGATGAAGTGGACAGCATCAAAGTCAAACTGAATTGGATGAAAGA
AGCACTGGAAGTATCTGAGAAGACAAGATCAGAGCTCCAACAAGAGCTTG
AGCACAAAGAAGAAGGAATAACCGAATTGGAACACCAgctaaaaagagaa
aaggaGTCCGTTCACAACCTATCTATCAATTTGTCGCTTCAACAACAAGA
AACTAAAGGGCTTCATAAGGCTCTCGAACAGGCCTCGATGAAGTATTCTG
ATGTTTACGCGCTAGTGGAGAAACAAGAACAACGTTTTATCAAAGGTCTT
GGGAGACGAGGTCAAATGCGTGATCAAGATAAACTGGAGCCATCAGAAAT
CAAATCATTACTTGAAGATGTCCGAGGGCTTTTGtcttcaactttaaaga
aatcgTCATCAAGCAAGAAATCGCCCAATAGCCCTCGGTCACCGCGTCAA
CGAAGCAAAGTCGACGACAAGTGGCTTACCAATAGTTTAAAACTTGGACG
AAATTCAGAGAAGTTAAATGAATATTTGAACAGTTTTGATCAGAATTCAA
CTTCTGGTTCTGTGGTTGGAGCTTCTTCACCAATGAACTCGACACCGAAT
GGGAGAACTCGTAAGAAGGTGACGATCGAGGAAGACCAATCATCTGTTTA
TTCATTTGATTACACTACTGATGAAGAGTCTGAATACCCCATTCAACATC
CTATGCTTCGCAAACATAAACAAGGTGGGACGGCCGCCAAGCGTTTACAG
GAGAAGTTGAACAACTTGAAGAAGATGGGAGAAGACCTGACCAACAATAA
CAAAGGTTTCATAGCTAGCATGGTTGACGGTGTTTTGCTTGCTCCTCATT
GTAACACCAGTAAACTGAACTCCAAGTAGTTGTGTTGGGGCAGACTAACA
AGTAAGAGAATGTCGTTGGCAAGAAAGCAATGGACGAAATATATGATAAC
TATTAAGGAGTTGAAGTGAATAGAATCGGACGTTTAGACTTTCAGATGTT
TCAACATTTTGTATCTCTATTCTAGTATTTAAAAGGTTGAAAGcttgact
ttattttttttttgtgagaAAGTTGCGAGCTTGAAAAAATAGTTATTTGA
CAGTGTCAGAATAGGAAAAGAAAG
Run BLAST on NCBI

transcript from alignment at sc0000080:14082..19208+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007788 ID=TCONS_00007788|Name=TCONS_00007788|organism=Clytia hemisphaerica|type=transcript|length=5127bp|location=Sequence derived from alignment at sc0000080:14082..19208+ (Clytia hemisphaerica)
AACCATTTCAAAATCCACAAGCCCCAATCAACAAAATAACATCTCCTCGA
GTGGTGCCATCTTCTCAACAGATAACTCCTGGCCAAATAACTCCATCAGA
TTCTGTCCTATCTAATTATCAATACCAAATTGAAACACTACAACGGAAAC
TTCGAGTTGCAACAGACTTGTGTACCGAGCAAGAAATGGAGTCTAAAACT
TCGTTGAAAGAAGCTGAACTGAATTTCAGGCAATTACTTACACAGCGTGA
TAGTTTCATCAAACTTAGGTAAAATCCTTCCCCTTTCAAACATTTCAAGA
TTAATAGAAAAGAGTGAAATGACATCAATCTGCTTGGTGTACATAAGGAA
TGACCATTTTGATTGTATTTAATCTATCCTATCGGGTGTGTcagaaataa
gttaccctctttaaaataaaatttgtcgaCATCTATGAATCTCTAAAGAA
TGTAACTATTTCTATGATACACAAAAAAGAAAGGTTAACTTAAACTTTCA
TGTTGGATATTAATTCCGAACGTTTATTAATTAAGTCAAGTTTTGACGTC
ATAATGTGATATTTTTCTGTCAGGCACAAATTACATTGTTTTGAGCCATT
GTTTTGACttaataaaattaataaacggggggagggTCCTAATAAGGTTG
GAAAAAAACCCAGAAAATTAACAAGCAGTCACTAATTAGAGGACTTGATA
CAGAAGAGATCTTCTTCATCTAACTTTTACTCAACTATTCTTCCTATTGC
AAGTTTATATTTGTTACTTTGATGCTTTCTTTTTTCCTTCTAAGGGAATC
AGAGTCAAACAATCAACAGCAATTGATTTCCCACTTGCAATTGACACTTG
AAAAGCTGGAGATGGACAAAGCACATTATGAAGAAACCATCCAACAATTG
AACCAATTCTCTAAAGTACAAAAAAATGAGATTGATTCACTTAAGAAACA
GTTGGACACATACAACAAAAGTTTCAACAGTCTATCACTCATACTATTAC
CAGATATGAAAAGTAGTTTGGGTGGTAAGTTTGAAGACATGAATTCCATT
TCAGTCACCAGTATAGCAAATATGGTTGAGAAGCTTTTGTTATGTCACCG
GAAACAAGACGAAATGATGAAGTTCAAGATCCAAAATTTGGAAGGAAAAT
TATCTGATCAAGATAAATCAAGTGAAGAGAAGCTGAAATACGAAAAGAGG
TTCATTGAAGTTCGCCAACAAGAGCTTGTTGGTCAAATGGAGAAATCCCT
GCAAGCTAAGGAAACTGAAATCACATCTTTGAAAGGTTCTTTACAAGCCC
TTGAAACTAAATATCAAAATGCTTTGAAACGTTTCAAGGAAGAAATTCTG
AAATATAAAGCTTCAATGGCAGAAAGTGAGAAACTGTTTGAAACGAAATA
CAATGAGATTACCGATCAAAAAGACAAAGCGGTTAAGAAGTTGACCAAAT
TGCAAAATGGGCAACATGATGTAAGCAACCTCAACCATACCATGAAAact
gaattgaaaaatcttcgCGAGAAtgttaacaagaaaacaaaagaatattc
AGATGCTAAACAAGAGAAGAAGAAAGCAGAAAAGGAAACTGAGAAATTCA
AACAGAGAATCAAGGAAATGGTACTAGCGGACGAACAAAAGTCTTTGGAA
TCAAGAACCACCATCAGCAACCTGGAGGACCATTTAAGCCACCTTGAGGT
TGAATATGAAAACCTTCAACTTTATGTTCAAGAACTTACTGAAAGACTAC
GCATGCTCCCTCAAGAAATCGAATCACAGGTTCAAGGGGACGAGCAACAG
AAATATGAAGCTAAAATGCAAGAGATTAACAAGCTAATAGAAAACCATAA
ATCTGTTTTGGAAAATGCAAACATTGAGATTGAAAGCAAAAGTCAGCTAG
TAAAAGCTGGTCATGATCAGATCAAATTGCTCCAGAAGAAAGTCGAATCT
TTGAAAAGTGACAATGCAAAATTAAAAGAGAAGAACAAGGAACTTGAATC
AAAGCTTGGCCAGCGCGAGACGCGTCTGGTAGACTTACAGCTTGTGGCCA
CAGAATCTAAAGAAGCTCTGAAAGCTTACAGTACCAAAGAAATGCAAAAT
CGAAAAGCATTAGAAtgttcacaaaaaatgaatctaCAGTTTCAAGGGAA
AGTCGATAATATGCATAAAGAGAAGGTCGACCTGGAGGTATCTTATGATT
TACTGAAGAAACAGTTCCGTAAGGTAGAAGAGGATATGAAAAAGTTGGAT
CAAAAAATTCGCTCACAAACTCAAGAGATTGATACCGTCACAAAAGATCG
TAAAGCCATTGCTaagaaactgaaagaaaaaaatgacgcCTTGATCTCCA
TGCAACAGAAACACGAAATCAACTCCAAGAACATTTGTATGGTCAAGGAG
AGTaatttcgagttacaaaaatCATGTGAAGATCTTGTCAAACACAACAC
CAATTTGTCCAGTGATTTGAGATCGTTGGAGGAGGCAAAGTTCAAATTAG
AGAAACTTCTCACAGAGAAAGAAGTATTGAAGGATCAAGAGGTGGAAAAC
TTGCTGCAACGTTTACAAGGTTCTGAAGCTGATATCAACAGGTTAAAGAA
ACTGCTGAAGAGATTTGAATCATCTGGTAATACACGTAAGCTTTGTTTAA
CTTATTATGGGAAGTGTAATGAATGAATGTAGAGCaagacaaaatataaa
ttttagtGATATTCTTATGGTGTAAGCTTTGGAAAAGGTTATGACTGCTT
TCTTTATCAAGTTTCAAGTCAACAGTCCATTTTAATAAACTTTTAATATT
TATCTTTTTGTTGTGTTGAACATTTGACATCATGTTTGGTTTTTAGAAGC
AAAGATTGCCAGCATGTCTCAGAAAGCTGTCACAAAACAAAGAGATGAAG
TGGACAGCATCAAAGTCAAGtatgtttttcattttatttttagccAGGGG
TTGTGAACTttgtgaaattaattttgttttgttagTTCATAAAGAAGGTT
TAGGATGTGTTTAAAGGATATCATATAAATTATCTTCTACCATTCATTTA
CATAGCATTTTATTGACCCCCACGTCAGCATTCGATCCCCCAGGTCTAGT
GCAAATAAAAAGGTGATTGACTTCCTCACTCCCAGCTTCACCAACAGCCA
CCAGATATAATATACTTacttaaaaatattaaattcgAACTTTTTATATA
TCACTTAGACTGAATTGGATGAAAGAAGCACTGGAAGTATCTGAGAAGGT
AATTCCAATTTGCTTTAGATTGAGGAGAGGCTTCGAATTCTTGTCATACC
ATTTTAATCATATATATGATGTGATTATATTGTTTCTTTTTCTGAACATA
CCTGATAGCCTTTTTGTGGAAATTCATTTTAAGTAGTTACGGTGTAAGAG
TTACAGAGGTTTATgagacattgttaactgaagggacgagagaACTTTTT
TGAGTTAAGTAGACATTAGAGTGGTAgagattcgagttaaagagactcta
ctgtataaaAGACTTAATCTCGAATGActgaatctttttctttttccata
gACAAGATCAGAGCTCCAACAAGAGCTTGAGCACAAAGAAGAAGGAATAA
CCGAATTGGAACACCAgctaaaaagagaaaaggaGTCCGTTCACAACCTA
TCTATCAATTTGTCGCTTCAACAACAAGAAACTAAAGGGCTTCATAAGGC
TCTCGAACAGGTCTCTGCTCGTCTCATGTTCATTTTCTAAAGCTTCTTTG
CTTGATTCCATATCATGATTTTTTAGACTGATTatgtttttctcaatttt
ggtTTTATTGGATCATAAGAGGCCCAAGTATTTCTTATAGCATTTTCTCC
CACTTTTTTAGGCCTCGATGAAGTATTCTGATGTTTACGCGCTAGTGGAG
AAACAAGAACAACGTTTTATCAAAGTATCATTACTTTTGTTGCCCTAATT
CTTTCTACTGATATCTTAGTCCCGAAATGTAGTTTTATAAACTCGGTTTT
ATAGGTCCGTGCATTTTGTAGATTGATTTAGATCCCacgtaaaattaaaa
agaaattaggtATTATGAAGTAGTGCAATCTAGAATTATTCACTTTTTCA
TAGGGTCTTGGGAGACGAGGTCAAATGCGTGATCAAGATAAACTGGAGCC
ATCAGAAATCAAATCATTACTTGAAGATGTCCGAGGGCTTTTGtcttcaa
ctttaaagaaatcgTCATCAAGCAAGAAATCGCCCAATAGCCCTCGGTCA
CCGCGTCAACGAAGCAAAGTCGACGACAAGTGGCTTACCAATAGTTTAAA
ACTTGGACGAAATTCAGAGAAGTTAAATGAATATTTGAACAGTTTTGATC
AGAATTCAACTTCTGGTTCTGTGGTTGGAGCTTCTTCACCAATGAACTCG
ACACCGAATGGGAGAACTCGTAAGAAGGTGACGATCGAGGAAGACCAATC
ATCTGTTTATTCATTTGATTACACTACTGATGAAGAGTCTGAATACCCCA
TTCAACATCCTATGCTTCGCAAACATAAACAAGGTATGTACAGGACTTCT
ATCACATACATGCTGGACCAGATCTTGCCTTGATTATATACCATTTTAAA
TTATCTATATCTCTTTCTTCTGTCAAGTTCCTGATGACTGGTCGCTCATG
ATTTTTTATGGTATCAGCTATGATATTTTTAATTCTCATGGTACTACTCA
CTGGCGTCAATCTTCTTGTAATTTCAGGTGGGACGGCCGCCAAGCGTTTA
CAGGAGAAGTTGAACAACTTGAAGAAGATGGGAGAAGACCTGACCAACAA
TAACAAAGGTTTCATAGCTAGCATGGTTGACGGTGTTTTGCTTGCTCCTC
ATTGTAACACCAGTAAACTGAACTCCAAGTAGTTGTGTTGGGGCAGACTA
ACAAGTAAGAGAATGTCGTTGGCAAGAAAGCAATGGACGAAATATATGAT
AACTATTAAGGAGTTGAAGTGAATAGAATCGGACGTTTAGACTTTCAGAT
GTTTCAACATTTTGTATCTCTATTCTAGTATTTAAAAGGTTGAAAGcttg
actttattttttttttgtgagaAAGTTGCGAGCTTGAAAAAATAGTTATT
TGACAGTGTCAGAATAGGAAAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004431XLOC_004431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007788-exon-sc0000080-1491911889:14082..14349TCONS_00007788-exon-sc0000080-1491911889:14082..14349Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1510915933:14082..14349TCONS_00007788-exon-sc0000080-1510915933:14082..14349Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1575043694:14082..14349TCONS_00007788-exon-sc0000080-1575043694:14082..14349Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1491911889:14876..16716TCONS_00007788-exon-sc0000080-1491911889:14876..16716Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1510915933:14876..16716TCONS_00007788-exon-sc0000080-1510915933:14876..16716Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1575043694:14876..16716TCONS_00007788-exon-sc0000080-1575043694:14876..16716Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1491911889:16928..17000TCONS_00007788-exon-sc0000080-1491911889:16928..17000Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1510915933:16928..17000TCONS_00007788-exon-sc0000080-1510915933:16928..17000Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1575043694:16928..17000TCONS_00007788-exon-sc0000080-1575043694:16928..17000Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1491911889:17290..17329TCONS_00007788-exon-sc0000080-1491911889:17290..17329Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1510915933:17290..17329TCONS_00007788-exon-sc0000080-1510915933:17290..17329Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1575043694:17290..17329TCONS_00007788-exon-sc0000080-1575043694:17290..17329Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1491911889:17633..17791TCONS_00007788-exon-sc0000080-1491911889:17633..17791Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1510915933:17633..17791TCONS_00007788-exon-sc0000080-1510915933:17633..17791Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1575043694:17633..17791TCONS_00007788-exon-sc0000080-1575043694:17633..17791Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1491911889:17943..18005TCONS_00007788-exon-sc0000080-1491911889:17943..18005Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1510915933:17943..18005TCONS_00007788-exon-sc0000080-1510915933:17943..18005Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1575043694:17943..18005TCONS_00007788-exon-sc0000080-1575043694:17943..18005Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1491911889:18185..18614TCONS_00007788-exon-sc0000080-1491911889:18185..18614Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1510915933:18185..18614TCONS_00007788-exon-sc0000080-1510915933:18185..18614Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1575043694:18185..18614TCONS_00007788-exon-sc0000080-1575043694:18185..18614Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1491911889:18809..19208TCONS_00007788-exon-sc0000080-1491911889:18809..19208Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1510915933:18809..19208TCONS_00007788-exon-sc0000080-1510915933:18809..19208Clytia hemisphaericaexon
TCONS_00007788-exon-sc0000080-1575043694:18809..19208TCONS_00007788-exon-sc0000080-1575043694:18809..19208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:14082..19208 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.916945	1.03603	0.508896	0.476953	4.75074	3.73186	1.27826	1.42074	0.00013574	0.718048	3.82983	0.135778	0.635907	1.75561	1.583	0.792287	2.16074	0.743991	0.000582802	0.141047	1.19542	1.56312	0.224742	0.248126	25.2585	19.5161	0.824463	0	6.75792e-08	0.353429
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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