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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007823 ID=TCONS_00007823|Name=TCONS_00007823|organism=Clytia hemisphaerica|type=transcript|length=1835bp
ATAATTGTGGCGAGTGCGTGATTTTTGGCTAAGTAAAGAATAATACACTG
CTTATTTATCATGAACAAAAATAAACGATTGGTATCTGTTTATGTTTTAC
CGCCCGGCTCAAAACCGATTGTCCGGGTTGAATGTCCGGAACAGTCGATT
GAAGCACAACGATTGTTTAAATTATGTTGTGATACTATTCAGTTGTATGA
AAGCAGTCGAAGATTTTTCGGATTATTTCGTGGTTTATTACACCCGGTGA
AAAAATACGGAGACAGTGAACTAATTATGTTACCCGTCAAAACATACCCT
ATTTCCATACAGAAATGGTCTTTCGATATCATTCAAGAATGTAGGCTAAT
CAAAACAGATCCAATCGCTATCAGACTGCTTGCTCTACAGTACAAATGTG
ATTTAGAAATGAAACGAAAACATCCAACCAAGGAACAGTTAACAGACTTA
AAATCTTTCGAGGACCCAGAATTCACTTGTTATAAACAGTATTTGGATTG
TGCAAGAAGAATCCTTGATTACACGTGGACAGTCGTTTTGGGAGTGGAAG
TTGTCCAAAAAGTCAAACTGGTGACAAATATTCTGCAGAAAGGAAGCAAA
GTGGATTTGGCGTGCACGCCCAAGAAATTGATCATTATCGGGCAATCATT
TGATCTAGCAATCCCTTGGCGAAAGATTCGACGTTTTGCTGAAATTAACG
AAACAAAAACAATCAGTGTTGAAATTTTACTGGAAAGCAAAAACTTCACT
TGGATCGAGTTCAAGACAATACAAGGAGTTTATCTTCTCCAAGTGCTGGC
TGAATACATTGAGACAATGAACGTTAAGTTACAACCACCGGTTTTCAAGC
AACCTAAATTCGTtcttgatgaagaagaagaaccaAAGAAGAAAATCACA
TTCACCATGCTGAAAGAAGAATTATTCGGTGCCggcaaaaagaagaaaga
agaggaTAAAACATTCTATCAAGATTTCGATGCTATTGATgtggtgacgt
catcagatgaaaacgaaagtgaaagtgaggAGGATGAgatttcaatgacg
tcatcatcgaGAAGAAGCTCCATAACGAGTCAGTTTTCAGCCAAGAAATA
TTTGACGGCTGATGATGGTCAAAAACCAGGACCATCGAATACTCCCGACC
GCGTCTCCAAGAAAACTGAAAGTCTCCAAAGTGCTAAATCAGTAAGAAAT
GAAGGGAGTTTGCTTGCAGTCCAAAATGACAACACTCTGAAAGATACTGA
ATCCACATCAGCAGGTGGAAGTTTTCTTTACATCAACGACGATACAGGAT
CGAAGAATGACAGCCTTCTTGACATCAAAGAATCAAACATGAGGATGGGC
TCAGTTATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCTTAGAA
AATACTATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGCAAGTA
AAAGCGATTCTTTCGTCCCTTTTTGCCGACGAATGTTTTACTGATGAGAC
AGTGAGTCAGAGAGTTTCCATTGGCAAATTTCCGGAGCTGCTGTTAAACT
AATAATACTTATTGAAGGAATactttttttgttgaatttctctttaagag
aaaacctggttatcaaactagtAGTTGTCTTTCCAAGTGTTTCTCGTTGT
AATGAAATTATTACGCTTTGTTTCAAATAAATGAACTTTCTTCTCAAATT
TAGAAAGAATATGATTACAATATTGAAAACATAACAGATCAAAAATGAAG
ATATAATCGTCTTTATTCGTGATACATTAATTTTACTCCCATCGGTAAAC
CATGTTTGTAAATTCCATTCCAACCAGGTACGGAC Run BLAST on NCBI protein sequence of TCONS_00007823-protein >TCONS_00007823-protein ID=TCONS_00007823-protein|Name=TCONS_00007823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MNKNKRLVSVYVLPPGSKPIVRVECPEQSIEAQRLFKLCCDTIQLYESSR
RFFGLFRGLLHPVKKYGDSELIMLPVKTYPISIQKWSFDIIQECRLIKTD
PIAIRLLALQYKCDLEMKRKHPTKEQLTDLKSFEDPEFTCYKQYLDCARR
ILDYTWTVVLGVEVVQKVKLVTNILQKGSKVDLACTPKKLIIIGQSFDLA
IPWRKIRRFAEINETKTISVEILLESKNFTWIEFKTIQGVYLLQVLAEYI
ETMNVKLQPPVFKQPKFVLDEEEEPKKKITFTMLKEELFGAGKKKKEEDK
TFYQDFDAIDVVTSSDENESESEEDEISMTSSSRRSSITSQFSAKKYLTA
DDGQKPGPSNTPDRVSKKTESLQSAKSVRNEGSLLAVQNDNTLKDTESTS
AGGSFLYINDDTGSKNDSLLDIKESNMRMGSVISNASNSSFIFRS Run BLAST on NCBI transcript from alignment at sc0000080:288243..290777+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007823 ID=TCONS_00007823|Name=TCONS_00007823|organism=Clytia hemisphaerica|type=transcript|length=2535bp|location=Sequence derived from alignment at sc0000080:288243..290777+ (Clytia hemisphaerica)
ATAATTGTGGCGAGTGCGTGATTTTTGGCTAAGTAAAGAATAATACACTG
CTTATTTATCATGAACAAAAATAAACGATTGGTATCTGTTTATGTTTTAC
CGCCCGGCTCAAAACCGATTGTCCGGGTTGAATGTCCGGAACAGTCGATT
GAAGCACAACGATTGTTTAAATTATGTTGTGATACTATTCAGTTGTATGA
AAGCAGTCGAAGATTTTTCGGATTATTTCGTGGTTTATTACACCCGGTGA
AAAAATACGGAGACAGTGAACTAATTATGTTACCCGTCAAAACATACCCT
ATTTCCATACAGAAATGGTCTTTCGATATCATTCAAGAATGTAGGCTAAT
CAAAACAGATCCAATCGCTATCAGACTGCTTGCTCTACAGTACAAATGTG
ATTTAGAAATGAAACGAAAACATCCAACCAAGGAACAGTTAACAGACTTA
AAATCTTTCGAGGACCCAGAATTCACTTGTTATAAACAGTATTTGGATTG
TGCAAGAAGAATCCTTGATTACACGTGGACAGTCGTTTTGGGAGTGGAAG
TTGTCCAAAAAGTCAAACTGGTGACAAATATTCTGCAGAAAGGAAGCAAA
GTGGATTTGGCGTGCACGCCCAAGAAATTGATCATTATCGGGCGTATGTA
ATCCCTACCTTTCTTGGGGTATATTATAGAGGGGGTCTGATCTGGGAGCA
TGAAGTCAGGGGAGTCGACATTTTTTAATCTTGTGTTTGGGGTATAAATA
ACCTTTTTTTCGAATTGAGATGCTCTTGCTTTGCTTTACTAATTAAGTTG
AAAGtgattgtcaacaacaacaaagtgcTTTTGCTTTACTTTAGAAAGAT
TTTNGAAAAtgattgtcaacaacaacaaagtgcTTTTGCTTTACTTCAGA
AAGATTTTTAGTAGCATAAAATTCGCTGCACTTCAGTTAATTATCACGTT
TAAATTTGGCAAGTCAGTTTGTAATTAAATAGGCTTTTGTGAAGTGgaaa
tttttactttgaattatttttggcGACTTTTTTGCTTTCTTGTTACAGAA
TCATTTGATCTAGCAATCCCTTGGCGAAAGATTCGACGTTTTGCTGAAAT
TAACGAAACAAAAACAATCAGTGTTGAAATTTTACTGGAAAGCAAAAACT
TCACTTGGATCGAGTTCAAGACAATACAAGGAGTTTATCTTCTCCAAGTG
CTGGCTGAATACATTGAGACAATGAACGTTAAGTTACAACCACCGGTTTT
CAAGCAACCTAAATTCGTtcttgatgaagaagaagaaccaAAGAAGAAAA
TCACATTCACCATGCTGAAAGAAGAATTATTCGGTGCCggcaaaaagaag
aaagaagaggaTAAAACATTCTATCAAGATTTCGATGCTATTGATgtggt
gacgtcatcagatgaaaacgaaagtgaaagtgaggAGGATGAgatttcaa
tgacgtcatcatcgaGAAGAAGCTCCATAACGAGTCAGTTTTCAGCCAAG
AAATATTTGACGGCTGATGATGGTCAAAAACCAGGACCATCGAATACTCC
CGACCGCGTCTCCAAGAAAACTGAAAGTCTCCAAAGTGCTAAATCAGTAA
GAAATGAAGGGAGTTTGCTTGCAGTCCAAAATGACAACACTCTGAAAGAT
ACTGAATCCACATCAGCAGGTGGAAGTTTTCTTTACATCAACGACGATAC
AGGATCGAAGAATGACAGCCTTCTTGACATCAACGAATCAAACATGAGGA
TGGGCTCAGTTATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCC
TAGAAAATACTATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGC
AAGTAAAAGCGATTCTTTCGTCCCTTTTACAGGATCGAAGAATGACAGCC
TTCTTGACATCAAAGAATCAAACATGAGGATGGGCTCAGTTATCAGCAAT
GCATCCAACTCTTCATTNAAGTTTTCTTTACATCAACGACGATACAGGAT
CGAAGAATGACAGCCTTCTTGACATCAAAGAATCAAACATGAGGATGGGC
TCAGTTATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCTTAGAA
AATACTATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGCAAGTA
AAAGCGATTCTTTCGTCCCTTTTTGCCGACGAATGTTTTACTGATGAGAC
AGTGAGTCAGAGAGTTTCCATTGGCAAATTTCCGGAGCTGCTGTTAAACT
AATAATACTTATTGAAGGAATactttttttgttgaatttctctttaagag
aaaacctggttatcaaactagtAGTTGTCTTTCCAAGTGTTTCTCGTTGT
AATGAAATTATTACGCTTTGTTTCAAATAAATGAACTTTCTTCTCAAATT
TAGAAAGAATATGATTACAATATTGAAAACATAACAGATCAAAAATGAAG
ATATAATCGTCTTTATTCGTGATACATTAATTTTACTCCCATCGGTAAAC
CATGTTTGTAAATTCCATTCCAACCAGGTACGGAC Coding sequence (CDS) from alignment at sc0000080:288243..290777+ >TCONS_00007823 ID=TCONS_00007823|Name=TCONS_00007823|organism=Clytia hemisphaerica|type=CDS|length=4014bp|location=Sequence derived from alignment at sc0000080:288243..290777+ (Clytia hemisphaerica)
ATGAACAAAAATAAACGATTGGTATCTGTTTATGTTTTACCGCCCGGCTC
AAAACCGATTGTCCGGGTTGAATGTCCGGAACAGTCGATTGAAGCACAAC
GATTGTTTAAATTATGTTGTGATACTATTCAGTTGTATGAAAGCAGTCGA
AGATTTTTCGGATTATTTCGTGGTTTATTACACCCGGTGAAAAAATACGG
AGACAGTGAACTAATTATGTTACCCGTCAAAACATACCCTATTTCCATAC
AGAAATGGTCTTTCGATATCATTCAAGAATGTAGGCTAATCAAAACAGAT
CCAATCGCTATCAGACTGCTTGCTCTACAGTACAAATGTGATTTAGAAAT
GAAACGAAAACATCCAACCAAGGAACAGTTAACAGACTTAAAATCTTTCG
AGGACCCAGAATTCACTTGTTATAAACAGTATTTGGATTGTGCAAGAAGA
ATCCTTGATTACACGTGGACAGTCGTTTTGGGAGTGGAAGTTGTCCAAAA
AGTCAAACTGGTGACAAATATTCTGCAGAAAGGAAGCAAAGTGGATTTGG
CGTGCACGCCCAAGAAATTGATCATTATCGGGCAATCATTTGATCTAGCA
ATCCCTTGGCGAAAGATTCGACGTTTTGCTGAAATTAACGAAACAAAAAC
AATCAGTGTTGAAATTTTACTGGAAAGCAAAAACTTCACTTGGATCGAGT
TCAAGACAATACAAGGAGTTTATCTTCTCCAAGTGCTGGCTGAATACATT
GAGACAATGAACGTTAAGTTACAACCACCGGTTTTCAAGCAACCTAAATT
CGTtcttgatgaagaagaagaaccaAAGAAGAAAATCACATTCACCATGC
TGAAAGAAGAATTATTCGGTGCCggcaaaaagaagaaagaagaggaTAAA
ACATTCTATCAAGATTTCGATGCTATTGATgtggtgacgtcatcagatga
aaacgaaagtgaaagtgaggAGGATGAgatttcaatgacgtcatcatcga
GAAGAAGCTCCATAACGAGTCAGTTTTCAGCCAAGAAATATTTGACGGCT
GATGATGGTCAAAAACCAGGACCATCGAATACTCCCGACCGCGTCTCCAA
GAAAACTGAAAGTCTCCAAAGTGCTAAATCAGTAAGAAATGAAGGGAGTT
TGCTTGCAGTCCAAAATGACAACACTCTGAAAGATACTGAATCCACATCA
GCAGGTGGAAGTTTTCTTTACATCAACGACGATACAGGATCGAAGAATGA
CAGCCTTCTTGACATCAAAGAATCAAACATGAGGATGGGCTCAGTTATCA
GCAATGCATCTAACTCTTCATTCATCTTTCGCTCTTAGATGAACAAAAAT
AAACGATTGGTATCTGTTTATGTTTTACCGCCCGGCTCAAAACCGATTGT
CCGGGTTGAATGTCCGGAACAGTCGATTGAAGCACAACGATTGTTTAAAT
TATGTTGTGATACTATTCAGTTGTATGAAAGCAGTCGAAGATTTTTCGGA
TTATTTCGTGGTTTATTACACCCGGTGAAAAAATACGGAGACAGTGAACT
AATTATGTTACCCGTCAAAACATACCCTATTTCCATACAGAAATGGTCTT
TCGATATCATTCAAGAATGTAGGCTAATCAAAACAGATCCAATCGCTATC
AGACTGCTTGCTCTACAGTACAAATGTGATTTAGAAATGAAACGAAAACA
TCCAACCAAGGAACAGTTAACAGACTTAAAATCTTTCGAGGACCCAGAAT
TCACTTGTTATAAACAGTATTTGGATTGTGCAAGAAGAATCCTTGATTAC
ACGTGGACAGTCGTTTTGGGAGTGGAAGTTGTCCAAAAAGTCAAACTGGT
GACAAATATTCTGCAGAAAGGAAGCAAAGTGGATTTGGCGTGCACGCCCA
AGAAATTGATCATTATCGGGCAATCATTTGATCTAGCAATCCCTTGGCGA
AAGATTCGACGTTTTGCTGAAATTAACGAAACAAAAACAATCAGTGTTGA
AATTTTACTGGAAAGCAAAAACTTCACTTGGATCGAGTTCAAGACAATAC
AAGGAGTTTATCTTCTCCAAGTGCTGGCTGAATACATTGAGACAATGAAC
GTTAAGTTACAACCACCGGTTTTCAAGCAACCTAAATTCGTtcttgatga
agaagaagaaccaAAGAAGAAAATCACATTCACCATGCTGAAAGAAGAAT
TATTCGGTGCCggcaaaaagaagaaagaagaggaTAAAACATTCTATCAA
GATTTCGATGCTATTGATgtggtgacgtcatcagatgaaaacgaaagtga
aagtgaggAGGATGAgatttcaatgacgtcatcatcgaGAAGAAGCTCCA
TAACGAGTCAGTTTTCAGCCAAGAAATATTTGACGGCTGATGATGGTCAA
AAACCAGGACCATCGAATACTCCCGACCGCGTCTCCAAGAAAACTGAAAG
TCTCCAAAGTGCTAAATCAGTAAGAAATGAAGGGAGTTTGCTTGCAGTCC
AAAATGACAACACTCTGAAAGATACTGAATCCACATCAGCAGGTGGAAGT
TTTCTTTACATCAACGACGATACAGGATCGAAGAATGACAGCCTTCTTGA
CATCAAAGAATCAAACATGAGGATGGGCTCAGTTATCAGCAATGCATCTA
ACTCTTCATTCATCTTTCGCTCTTAGATGAACAAAAATAAACGATTGGTA
TCTGTTTATGTTTTACCGCCCGGCTCAAAACCGATTGTCCGGGTTGAATG
TCCGGAACAGTCGATTGAAGCACAACGATTGTTTAAATTATGTTGTGATA
CTATTCAGTTGTATGAAAGCAGTCGAAGATTTTTCGGATTATTTCGTGGT
TTATTACACCCGGTGAAAAAATACGGAGACAGTGAACTAATTATGTTACC
CGTCAAAACATACCCTATTTCCATACAGAAATGGTCTTTCGATATCATTC
AAGAATGTAGGCTAATCAAAACAGATCCAATCGCTATCAGACTGCTTGCT
CTACAGTACAAATGTGATTTAGAAATGAAACGAAAACATCCAACCAAGGA
ACAGTTAACAGACTTAAAATCTTTCGAGGACCCAGAATTCACTTGTTATA
AACAGTATTTGGATTGTGCAAGAAGAATCCTTGATTACACGTGGACAGTC
GTTTTGGGAGTGGAAGTTGTCCAAAAAGTCAAACTGGTGACAAATATTCT
GCAGAAAGGAAGCAAAGTGGATTTGGCGTGCACGCCCAAGAAATTGATCA
TTATCGGGCAATCATTTGATCTAGCAATCCCTTGGCGAAAGATTCGACGT
TTTGCTGAAATTAACGAAACAAAAACAATCAGTGTTGAAATTTTACTGGA
AAGCAAAAACTTCACTTGGATCGAGTTCAAGACAATACAAGGAGTTTATC
TTCTCCAAGTGCTGGCTGAATACATTGAGACAATGAACGTTAAGTTACAA
CCACCGGTTTTCAAGCAACCTAAATTCGTtcttgatgaagaagaagaacc
aAAGAAGAAAATCACATTCACCATGCTGAAAGAAGAATTATTCGGTGCCg
gcaaaaagaagaaagaagaggaTAAAACATTCTATCAAGATTTCGATGCT
ATTGATgtggtgacgtcatcagatgaaaacgaaagtgaaagtgaggAGGA
TGAgatttcaatgacgtcatcatcgaGAAGAAGCTCCATAACGAGTCAGT
TTTCAGCCAAGAAATATTTGACGGCTGATGATGGTCAAAAACCAGGACCA
TCGAATACTCCCGACCGCGTCTCCAAGAAAACTGAAAGTCTCCAAAGTGC
TAAATCAGTAAGAAATGAAGGGAGTTTGCTTGCAGTCCAAAATGACAACA
CTCTGAAAGATACTGAATCCACATCAGCAGGTGGAAGTTTTCTTTACATC
AACGACGATACAGGATCGAAGAATGACAGCCTTCTTGACATCAAAGAATC
AAACATGAGGATGGGCTCAGTTATCAGCAATGCATCTAACTCTTCATTCA
TCTTTCGCTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007823-exon-sc0000080-1491911889:288243..288885 | TCONS_00007823-exon-sc0000080-1491911889:288243..288885 | Clytia hemisphaerica | exon |
| TCONS_00007823-exon-sc0000080-1510915933:288243..288885 | TCONS_00007823-exon-sc0000080-1510915933:288243..288885 | Clytia hemisphaerica | exon |
| TCONS_00007823-exon-sc0000080-1575043694:288243..288885 | TCONS_00007823-exon-sc0000080-1575043694:288243..288885 | Clytia hemisphaerica | exon |
| TCONS_00007823-exon-sc0000080-1491911889:289291..289928 | TCONS_00007823-exon-sc0000080-1491911889:289291..289928 | Clytia hemisphaerica | exon |
| TCONS_00007823-exon-sc0000080-1510915933:289291..289928 | TCONS_00007823-exon-sc0000080-1510915933:289291..289928 | Clytia hemisphaerica | exon |
| TCONS_00007823-exon-sc0000080-1575043694:289291..289928 | TCONS_00007823-exon-sc0000080-1575043694:289291..289928 | Clytia hemisphaerica | exon |
| TCONS_00007823-exon-sc0000080-1491911889:290224..290777 | TCONS_00007823-exon-sc0000080-1491911889:290224..290777 | Clytia hemisphaerica | exon |
| TCONS_00007823-exon-sc0000080-1510915933:290224..290777 | TCONS_00007823-exon-sc0000080-1510915933:290224..290777 | Clytia hemisphaerica | exon |
| TCONS_00007823-exon-sc0000080-1575043694:290224..290777 | TCONS_00007823-exon-sc0000080-1575043694:290224..290777 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:288243..290777 + |
Blast
The following BLAST results are available for this feature:
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