TCONS_00007833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007833
Unique NameTCONS_00007833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007833 ID=TCONS_00007833|Name=TCONS_00007833|organism=Clytia hemisphaerica|type=transcript|length=1220bp
acttttttttccatttcagaattttaagttaaaacagaaaaataagAGGT
CAACATGCGGCAGACGAGAAGAGAATATTTATTTGAAAGACTACAACAAT
TTATACATTGCGATGACTACACAAGCATCGCACATGTTTTACGCTGGGAA
CATCGGAAGGACGAGCTCTTTGATCTAAAGAATGACGAAGGGTTGACATT
GATTCATATCGCTTGTTTTGAAGGACAAGTCAGATGTTTGGAAGAATTTT
TGAAGAATGGAGCAAGTGTAAACCTTCAAAGTTCAGTCGGTTGGACGCCT
TTACATGCAGCTACTCTAGGAGGCAAACTAGAAGTAGTGGAATACTTGTT
GAGTCAATGTGCAGCAGATCCTCTTGCGAAGGACGAAATGGGGTGCGTCG
CTTCCGACCTCACAATGGATAGTGACATTCTTAAAACCATAAACAGATAC
GCTAATGAATTGAATTTACGACGAGAATTAGAAAGAGTTGCGGGACAACA
AGCTGCAGAACAAAGCAGTAAACGGAACACTCTTATATTCGAAACGAACG
ATATGGTCATTTCACGTTCGACAAGTGCTTTTACTACGTCATATGAAGCG
AGAGAAATAGAGGAACATCATTCGAATATTTTACCAATCACCGGACGAAG
TTTATTACAAATTCCCGGACAGCCCGTCAACACAGATACAACTTATCTAG
TTCGGCATAATTCAGCACCCATACAAAAAACATCACCCAATACTCGTAGA
TCTGAGAGTTCTTCCGAAAGTTCGGAACAGAATTCGCCGAGCTTGACTCG
ATTTTATAAACAAGAGGGTAAGCGAGTCTCAacgtcacgtgactctggtg
tTTTTGACGACGAGTCCGACATGGACAGTTTGACGGACCAGCTCATCAAA
AGGAAGTTAAGTTCAATATCACAAACGGACCACTATAACATGATTTGAAT
CGAAAAGATGTGGCGATGATATAAATATCTACTGTAAATtgtatttttct
ggaaaaatgaTAAGATTGTTTTATGTAAATTATAAATATCTTAGGTGCAT
AAATTTCGTTTTCGTTTATTAAAAGAAACACGTGTAATTAAATTTACCAG
TCAAATTATTTATTGTATAATGGTGTATAATTAATTTTCTAgctattttt
ttgtaaaaaaacaaaattctaaTGACACCTTACATAAGAAATAAACGGCA
AGAGGAAACCTTGAAAACAG
Run BLAST on NCBI

protein sequence of TCONS_00007833-protein

>TCONS_00007833-protein ID=TCONS_00007833-protein|Name=TCONS_00007833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MRQTRREYLFERLQQFIHCDDYTSIAHVLRWEHRKDELFDLKNDEGLTLI
HIACFEGQVRCLEEFLKNGASVNLQSSVGWTPLHAATLGGKLEVVEYLLS
QCAADPLAKDEMGCVASDLTMDSDILKTINRYANELNLRRELERVAGQQA
AEQSSKRNTLIFETNDMVISRSTSAFTTSYEAREIEEHHSNILPITGRSL
LQIPGQPVNTDTTYLVRHNSAPIQKTSPNTRRSESSSESSEQNSPSLTRF
YKQEGKRVSTSRDSGVFDDESDMDSLTDQLIKRKLSSISQTDHYNMI
Run BLAST on NCBI

transcript from alignment at sc0000080:408200..411494+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007833 ID=TCONS_00007833|Name=TCONS_00007833|organism=Clytia hemisphaerica|type=transcript|length=3295bp|location=Sequence derived from alignment at sc0000080:408200..411494+ (Clytia hemisphaerica)
acttttttttccatttcagaattttaagttaaaacagaaaaataagAGGT
CAACATGCGGCAGACGAGAAGAGAATATTTATTTGAAAGACTACAACAAT
TTATACATTGCGATGACTACACAAGCATCGCACATGTTTTACGCTGGGAA
CATCGGAAGGACGAGCTCTTTGATCTAAAGAATGACGAAGGGTTGACATT
GATTCATATCGCTTGTTTTGAAGGACAAGTCAGATGTTTGGAAGAATTTT
TGAAGAATGGAGCAAGTGTAAACCTTCAAAGTTCAGTCGGTTGGACGCCT
TTACATGCAGCTACTCTAGGTATGAAATCTAAAGACTCGACTATTCCTGA
AACACTGTGTTTTCGCTCATAATATCTGATACATGATTTCCATCTCATGA
CCAACACAAGGAATTCTCTTCAAGGACACAAATCTTGACCTTGTCGATTA
ACCCTTTCTGACCTTTTTCAGTTTGTTTAAATTTGGAGAATAAAAGATAA
GTTTATCGAGTTTCTCGCAAATGTCTTTGTAAGGAAGCTTTTACTTAAGG
AACAATTATTactgaaatttctgaaaacaGGGGACATGCATGGGTTTTTG
TGGGGTTTTTGTTCATGATTGACTAAGCACAAAAAGTATCAGAATCACTG
TATTTGTGCACTAATCATTTTAAAAAAACTGTCCGTTTTTCTGTTCTGAT
GTAGCGGAATGAGACAGATACAGTGATTAAGAAATAAGcttcgaaaagaa
aaaaatattttgacaattttgattaACAAGCCCACGCACTCTTAAAGGGT
TTTAATTTGAGAAGAAATCAAACAGAAAAAATGTCGAGAATTGTATCAAT
TTTCCCAAAGAGTCACGTGTGAATACATTTGACCTTTCAAGACAGGTCAT
ACTTGTCAAAACAGATCTTTCGCTGTTGACAAATAGAGTGCCGGTAGCAT
ACCGACTGGTGGTCCATAAAAAAGACCAATTTCCTAGCTATAAAACATTA
GAACCAACTAACccattaaaattttcttttccagGAGGCAAACTAGAAGT
AGTGGAATACTTGTTGAGTCAATGTGCAGCAGATCCTCTTGCGAAGGACG
AAATGGGGTGCGTCGCTTCCGACCTCACAATGGATAGTGACATTCTTAAA
ACCATAAACAGATACGCTAATGAATTGAATTTACGACGAGAATTAGAAAG
AGTTGCGGGACAACAAGCTGCAGAACAAAGCAGTAAACGGAACACTCTTA
TATTCGAAACGAACGATATGGTCATTTCACGTTCGACAAGTGCTTTTACT
ACGTCATATGAAGCGAGAGAAATAGAGGAACATCATTCGAATATTTTACC
AATCACCGGACGAAGTTTATTACAAATTCCCGGACAGCCCGTCAACACAG
ATACAACTTATCTAGTTCGGCATAATTCAGCACCCATACAAAAAACATCA
CCCAAGACTCGTAGATCTGAGAGTTCTTCCGAAAGTTCGGAACAGAATTC
GCCGAGCTTGACTCGATTTTATAAACAAGAGGGTAAGCGAGTCTCAacgt
cacgtgactctggtgtTTTTGACGACGAGTCCGACATGGACAGTTTGACG
GACCAGCTCATCAAAAGGAAGTTAAGTTCAATATCACAAACGGACCACTA
TAACATGATTTGAATCGAAAAGATGTGGCGATGATATAAATATCTACTGT
AAATtgtatttttctggaaaaatgaTAAGATTGTTTTATGTAAATTATAA
ATATCTTAGGTGCATAAATTTCGTTTTCGTTTATTAAAAGAAACACGTGT
AATTAAATTTACCAGTCAAATTATTTATTGTATAATGGTGTATAATTAAT
TTTCTAgctatttttttgtaaaaaaacaaaattctaaTGACACCTTACAT
AAGAAATAAACGGCAAGAGGAAACCTTGAAAACAGCTTTCACAAATTTAC
TCTAGTTGCAGATAGCCCACATAAAAGGAAATCGTTATTGATGGGTCAGT
AATTAAATGTAATGCTCTCACAATTTAATTTTGTGACAGATATAGATTGT
AAGTAAATCATCTGCTGAGGTGCACCTGCTAAGCTAAATTGAGTTGACAT
AGAGATAATCACTGTCTTTCGCTATGTCATACTCCTATTattggaaatat
tttcaataaatatGGAACATTTTTCTGAGTTTAAAGACAGCATACGTAGG
TAACAGAAATTAAGTAACCCCTTTTTCAAACGCTGAATNTGACCTTTCAA
GACAGGTCATACTTGTCAAAACAGATCTTTCGCTGTTGACAAATAGAGTG
CCGGTAGCATACCGACTGGTGGTCCATAAAAAAGACCAATTTCCTAGCTA
TAAAACATTAGAACCAACTAACccattaaaattttcttttccagGAGGCA
AACTAGAAGTAGTGGAATACTTGTTGAGTCAATGTGCAGCAGATCCTCTT
GCGAAGGACGAAATGGGGTGCGTCGCTTCCGACCTCACCATGGATAGTGA
CATTCTCAAAACCATAAACAGATACGCTAATGAATTGAATTTACGACGAG
AATTAGAACGAGTTGCCGGACAACAAGCTGTGGAACAAAGCAGTAAACGG
AACACTCTTATATTCGAAACGAACGATATGGTCATTTCACGTTCGACAAG
TGCTTTTACTACGTCATATGAAGCGAGAGAAATAGAGGAACATCATTCGA
ATATTTTACCAATCACCGGACGAAGTTTATTACAAATTCCCGGACAGCCC
GTCAACACAGATACAACTTATCTAGTTCGGCATAACTCAGCGCCCATACA
AAAAACATCACCCAATACTCGTAGATCTGAGAGTTCTTCCGAAAGTTCGG
AACAGAATTCGCCGAGCTTGACTCGATTTTATAAACAAGAGGGTAAGCGA
GTCTCAacgtcacgtgactctggtgtTTTTGACGACGAGTCCGACATGGA
CAGTTTGACGGACCAGCTCATCAAAAGGAAGTTAAGTTCAATATCACAAA
CGGACCACTATAACATGATTTGAATCGAAAAGATGTGGCGATGATATAAA
TATCTACTGTAAATtgtatttttctggaaaaatgaTAAGATTGTTTTATG
TAAATTATAAATATCTTAGGTGCATAAATTTCGTTTTCGTTTATTAAAAG
AAACACGTGTAATTAAATTTACCAGTCAAATTATTTATTGTATAATGGTG
TATAATTAATTTTCTAgctatttttttgtaaaaaaacaaaattctaaTGA
CACCTTACATAAGAAATAAACGGCAAGAGGAAACCTTGAAAACAG

Coding sequence (CDS) from alignment at sc0000080:408200..411494+

>TCONS_00007833 ID=TCONS_00007833|Name=TCONS_00007833|organism=Clytia hemisphaerica|type=CDS|length=2682bp|location=Sequence derived from alignment at sc0000080:408200..411494+ (Clytia hemisphaerica)
ATGCGGCAGACGAGAAGAGAATATTTATTTGAAAGACTACAACAATTTAT
ACATTGCGATGACTACACAAGCATCGCACATGTTTTACGCTGGGAACATC
GGAAGGACGAGCTCTTTGATCTAAAGAATGACGAAGGGTTGACATTGATT
CATATCGCTTGTTTTGAAGGACAAGTCAGATGTTTGGAAGAATTTTTGAA
GAATGGAGCAAGTGTAAACCTTCAAAGTTCAGTCGGTTGGACGCCTTTAC
ATGCAGCTACTCTAGGAGGCAAACTAGAAGTAGTGGAATACTTGTTGAGT
CAATGTGCAGCAGATCCTCTTGCGAAGGACGAAATGGGGTGCGTCGCTTC
CGACCTCACAATGGATAGTGACATTCTTAAAACCATAAACAGATACGCTA
ATGAATTGAATTTACGACGAGAATTAGAAAGAGTTGCGGGACAACAAGCT
GCAGAACAAAGCAGTAAACGGAACACTCTTATATTCGAAACGAACGATAT
GGTCATTTCACGTTCGACAAGTGCTTTTACTACGTCATATGAAGCGAGAG
AAATAGAGGAACATCATTCGAATATTTTACCAATCACCGGACGAAGTTTA
TTACAAATTCCCGGACAGCCCGTCAACACAGATACAACTTATCTAGTTCG
GCATAATTCAGCACCCATACAAAAAACATCACCCAATACTCGTAGATCTG
AGAGTTCTTCCGAAAGTTCGGAACAGAATTCGCCGAGCTTGACTCGATTT
TATAAACAAGAGGGTAAGCGAGTCTCAacgtcacgtgactctggtgtTTT
TGACGACGAGTCCGACATGGACAGTTTGACGGACCAGCTCATCAAAAGGA
AGTTAAGTTCAATATCACAAACGGACCACTATAACATGATTTGAATGCGG
CAGACGAGAAGAGAATATTTATTTGAAAGACTACAACAATTTATACATTG
CGATGACTACACAAGCATCGCACATGTTTTACGCTGGGAACATCGGAAGG
ACGAGCTCTTTGATCTAAAGAATGACGAAGGGTTGACATTGATTCATATC
GCTTGTTTTGAAGGACAAGTCAGATGTTTGGAAGAATTTTTGAAGAATGG
AGCAAGTGTAAACCTTCAAAGTTCAGTCGGTTGGACGCCTTTACATGCAG
CTACTCTAGGAGGCAAACTAGAAGTAGTGGAATACTTGTTGAGTCAATGT
GCAGCAGATCCTCTTGCGAAGGACGAAATGGGGTGCGTCGCTTCCGACCT
CACAATGGATAGTGACATTCTTAAAACCATAAACAGATACGCTAATGAAT
TGAATTTACGACGAGAATTAGAAAGAGTTGCGGGACAACAAGCTGCAGAA
CAAAGCAGTAAACGGAACACTCTTATATTCGAAACGAACGATATGGTCAT
TTCACGTTCGACAAGTGCTTTTACTACGTCATATGAAGCGAGAGAAATAG
AGGAACATCATTCGAATATTTTACCAATCACCGGACGAAGTTTATTACAA
ATTCCCGGACAGCCCGTCAACACAGATACAACTTATCTAGTTCGGCATAA
TTCAGCACCCATACAAAAAACATCACCCAATACTCGTAGATCTGAGAGTT
CTTCCGAAAGTTCGGAACAGAATTCGCCGAGCTTGACTCGATTTTATAAA
CAAGAGGGTAAGCGAGTCTCAacgtcacgtgactctggtgtTTTTGACGA
CGAGTCCGACATGGACAGTTTGACGGACCAGCTCATCAAAAGGAAGTTAA
GTTCAATATCACAAACGGACCACTATAACATGATTTGAATGCGGCAGACG
AGAAGAGAATATTTATTTGAAAGACTACAACAATTTATACATTGCGATGA
CTACACAAGCATCGCACATGTTTTACGCTGGGAACATCGGAAGGACGAGC
TCTTTGATCTAAAGAATGACGAAGGGTTGACATTGATTCATATCGCTTGT
TTTGAAGGACAAGTCAGATGTTTGGAAGAATTTTTGAAGAATGGAGCAAG
TGTAAACCTTCAAAGTTCAGTCGGTTGGACGCCTTTACATGCAGCTACTC
TAGGAGGCAAACTAGAAGTAGTGGAATACTTGTTGAGTCAATGTGCAGCA
GATCCTCTTGCGAAGGACGAAATGGGGTGCGTCGCTTCCGACCTCACAAT
GGATAGTGACATTCTTAAAACCATAAACAGATACGCTAATGAATTGAATT
TACGACGAGAATTAGAAAGAGTTGCGGGACAACAAGCTGCAGAACAAAGC
AGTAAACGGAACACTCTTATATTCGAAACGAACGATATGGTCATTTCACG
TTCGACAAGTGCTTTTACTACGTCATATGAAGCGAGAGAAATAGAGGAAC
ATCATTCGAATATTTTACCAATCACCGGACGAAGTTTATTACAAATTCCC
GGACAGCCCGTCAACACAGATACAACTTATCTAGTTCGGCATAATTCAGC
ACCCATACAAAAAACATCACCCAATACTCGTAGATCTGAGAGTTCTTCCG
AAAGTTCGGAACAGAATTCGCCGAGCTTGACTCGATTTTATAAACAAGAG
GGTAAGCGAGTCTCAacgtcacgtgactctggtgtTTTTGACGACGAGTC
CGACATGGACAGTTTGACGGACCAGCTCATCAAAAGGAAGTTAAGTTCAA
TATCACAAACGGACCACTATAACATGATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004443XLOC_004443Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007833-proteinTCONS_00007833-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007833-exon-sc0000080-1491911889:408200..408518TCONS_00007833-exon-sc0000080-1491911889:408200..408518Clytia hemisphaericaexon
TCONS_00007833-exon-sc0000080-1510915933:408200..408518TCONS_00007833-exon-sc0000080-1510915933:408200..408518Clytia hemisphaericaexon
TCONS_00007833-exon-sc0000080-1575043694:408200..408518TCONS_00007833-exon-sc0000080-1575043694:408200..408518Clytia hemisphaericaexon
TCONS_00007833-exon-sc0000080-1491911889:409234..409645TCONS_00007833-exon-sc0000080-1491911889:409234..409645Clytia hemisphaericaexon
TCONS_00007833-exon-sc0000080-1510915933:409234..409645TCONS_00007833-exon-sc0000080-1510915933:409234..409645Clytia hemisphaericaexon
TCONS_00007833-exon-sc0000080-1575043694:409234..409645TCONS_00007833-exon-sc0000080-1575043694:409234..409645Clytia hemisphaericaexon
TCONS_00007833-exon-sc0000080-1491911889:411006..411494TCONS_00007833-exon-sc0000080-1491911889:411006..411494Clytia hemisphaericaexon
TCONS_00007833-exon-sc0000080-1510915933:411006..411494TCONS_00007833-exon-sc0000080-1510915933:411006..411494Clytia hemisphaericaexon
TCONS_00007833-exon-sc0000080-1575043694:411006..411494TCONS_00007833-exon-sc0000080-1575043694:411006..411494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:408200..411494 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.739391	0.524914	0	0.194361	10.2527	4.51931	5.98563	5.1933	2.84706	5.40575	1.68396	4.95664	14.8152	13.9407	6.85271	16.3548	13.9165	28.8368	30.9942	30.6429	12.7256	13.2226	5.9941	5.12753	2.89671	5.53743	2.77475	1.57698	1.64961	2.52727
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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