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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007846 ID=TCONS_00007846|Name=TCONS_00007846|organism=Clytia hemisphaerica|type=transcript|length=1717bp
TTTGACTGAAGTTTTCCCGGTAATATTTTTCCAGCTAAATTAATTGGTTG
GTAAAAATTTCCAGTAACCAGCACCTTTCATGTGACCATAAGAGTGACGT
CATTGGCAAAACTGCAAAGGGAAATTAGGGCTGGAAAAAACGACTGAATT
TTAAAAGTCAATATGATCGATACAATCCCTGGAAGAGCATGAatttttgt
gcaaaattctgtATTAAAACAACTTCCTTATTGTCATAGTTTTTAGTATA
GTgcatgaaaatgttttcaatttcataatttattattgtttttaaactaa
caaaaacacgacaaaaaaacatttgtaCAATAAAATATTTGTTCCTATAA
ATATCTgaatttctacaaaaaaattcatattgCAAAATAAAATGTGAGGT
TATGTAATTCTTGCTACTCCCTATGAGTCTGTTGTTCAGTAGATTGGTGT
GTCACTAAGACCTAAAAAGTCGAAGTCGctttgacaaaaagtttttttct
ctgTCTGCATTACAAGAAAGCATTGAAATGATTATACCTTACACCATACG
AGCTGCTTGAATGGTTAGAGCTGGAGATGGAGTCTTTGAACTATTGATTT
TAGTGATTCGCTGGCAAATTCGAGCCCAAGTCCTTATTCAAGTAACTCGT
TGGAAATATTAATTGGTTAATGAGAGAGAAATATTTATTTGATTGAAACC
ATTCTTATTTGTTCATAGAATCTCCACAACAGAGTGCAAACTTACTGCAA
ATGctaaaaaatcaacaaacatAATTGAAAATTCCAGATCTGTCAGACTC
GGTatgttatttttatatttactaCCATTACAAATTCTTTGAAGCCTGTT
CAAAATGTTTAGCATTGATCAAAAGACAATATTGCGCTTGAAGTGACTCA
TAGTTCAAACTTAAGGAagcttattttggcgaatttaaTAGATTTGATTC
TTTTAGGGTTTTACTTCGCGAAAATCCCTATCAGGTATTTAAGGACCCAA
TTTCTATTCAAATGCAATATTGTCTTTGTATTGATTTCTAAGTCCTAACC
TTAGACAATAATTATAATTTCTAATACTATAATGTCTCTGATATTTTGCC
AATGGCACCGTCTCGATACCCATTTCACATTTCAGATTTATTGTTCAATC
CAAAAAGCTCGAAAGTTAATGCTTTGTGTTTGACAGCTGGTCATACTATC
GTTTTCTTTTTTACACGGACAGCCATTTCAACTCGTGCCACATAATAAAC
CCTTCAACCGATTTATTCATATTTTCATGAATCAAGAATATTGCCAGTTG
ATGCTGATTTCTTTTTATCATAAAGCATTTCGGAAGCTGGGTGtttttcc
ttcttcttctttttccctTTCTTAGATTTTCCCTTCTTAGATTTCTTACC
AACAAGAGCCATAATAGCAAGCTTCAGTCTTTCAACTTCACAATCACGAA
CTAATACTTTCAATTTTAAGTCATTCACCTGGTCGACACCAGTAAGTTCA
ATAACAGGAGGATCATCGACAGGTGTTTCTTCAGGAACTGCTTCAACGAT
ATCTAAAGGTACTGGTGAAACGACCTCTTCTTCAACTGCTTTGTTTTCCT
CGACGTTAGGAACTGCTTCAACTTCCTTTGTTTCTTCAGGTGTAGAAATT
TCTTCAACAACTGGAACTGCATTTGGTGCTGGAGCTGCTTCTTCTGCAGC
TGGTGCTGGGGTTGCTT Run BLAST on NCBI transcript from alignment at sc0000080:535982..538361+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007846 ID=TCONS_00007846|Name=TCONS_00007846|organism=Clytia hemisphaerica|type=transcript|length=2380bp|location=Sequence derived from alignment at sc0000080:535982..538361+ (Clytia hemisphaerica)
TTTGACTGAAGTTTTCCCGGTAATATTTTTCCAGCTAAATTAATTGGTTG
GTAAAAATTTCCAGTAACCAGCACCTTTCATGTGACCATAAGAGTGACGT
CATTGGCAAAACTGCAAAGGGAAATTAGGGCTGGAAAAAACGACTGAATT
TTAAAAGTCAATATGATCGATACAATCCCTGGAAGAGCATGAatttttgt
gcaaaattctgtATTAAAACAACTTCCTTATTGTCATAGTTTTTAGTATA
GTgcatgaaaatgttttcaatttcataatttattattgtttttaaactaa
caaaaacacgacaaaaaaacatttgtaCAATAAAATATTTGTTCCTATAA
ATATCTgaatttctacaaaaaaattcatattgCAAAATAAAATGTGAGGT
TATGTAATTCTTGCTACTCCCTATGAGTCTGTTGTTCAGTAGATTGGTGT
GTCACTAAGACCTAAAAAGTCGAAGTCGctttgacaaaaagtttttttct
ctgTCTGCATTACAAGAAAGCATTGAAATGATTATACCTTACACCATACG
AGCTGCTTGAATGGTTAGAGCTGGAGATGGAGTCTTTGAACTATTGATTT
TAGTGATTCGCTGGCAAATTCGAGCCCAAGTCCTTATTCAAGTAACTCGT
TGGAAATATTAATTGGTTAATGAGAGAGAAATATTTATTTGATTGAAACC
ATTCTTATTTGTTCATAGAATCTCCACAACAGAGTGCAAACTTACTGCAA
ATGctaaaaaatcaacaaacatAATTGAAAATTCCAGATCTGTCAGACTC
GGTatgttatttttatatttactaCCATTACAAATTCTTTGAAGCCTGTT
CAAAATGTTTAGCATTGATCAAAAGACAATATTGCGCTTGAAGTGACTCA
TAGTTCAAACTTAAGGAagcttattttggcgaatttaaTAGATTTGATTC
TTTTAGGGTTTTACTTCGCGAAAATCCCTATCAGGTATTTAAGGACCCAA
TTTCTATTCAAATGCAATATTGTCTTTGTATTGATTTCTAAGTCCTAACC
TTAGACAATAATTATAATTTCTAATACTATAATGTCTCTGATATTTTGCC
AATGGCACCGTCTCGATACCCATTTCACATTTCAGATTTATTGTTCAATC
CAAAAAGCTCGAAAGTTAATGCTTTGTGTTTGACAGCTGGTCATACTATC
GTTTTCTTTTTTACACGGACAGCCATTTCAACTCGTGCCACATAATAAAC
CCTTCAACCGATTTATTCATATTTTCATGAATCAAGAATATTGCCAGTTG
ATGCTGATTTCTTTTTATCATAAAGCATTTCGGAAGCTGGGTGtttttcc
ttcttcttctttttccctTTCTTAGATTTTCCCTTCTTAGATTTCTTACC
AACAAGAGCCATAATAGCAAGCTTCAGTCTTTCAACTTCACAATCACGAA
CTAATACTTTCAATTTTAAGTCATTCACCTGGTCGACACCAGTAAGTTCA
ATAACAGGAGGATCATCGACAGGTGTTTCTTCAGGAACTGCTTCAACGAT
ATCTAAAGGTACTGGTGAAACGACCTCTTCTTCAACTGCTTTGTTTTCCT
CGACGTTAGGAACTGCTTCAACTTCCTTTGTTTCTTCAGGTGTAGAAATT
TCTTCAACAACTGGAACTGCATTTGGTTCAGGAGCTGCTACTTCTTCTGC
AGCTGGTGCTGGAGCTGCTTCTTCTACAGCTGGTGCTGGTGCTGCTTCTT
TTGCAGCTGGTGCTGGAGCTGCTTTTTCTGCAGCTGGTGCTGGAGCTGCT
TCTTCTGCAGCTGGTGCTGGGGCTGCTTCTTCTGCAGCTGGTTCTGGAGC
TGCTTCTTCTGTAGCTGGTGCTGGTGCTGCTTCTTTTGCAGCTGGTGCTG
GAGCTGCTTTTTCTGCAGCTGGTGCTGGAGCTGCTTCTTCTGCAGCTGGT
TCTGGAGCTGCTTCTTCTGTAGCTGGTGCTGGTGCTGCTTCTTCTGCAGC
TGGTGCTGGAGCTGCTTCTTCTGTAGCTGGTTCTGGAGCTGCTTCTTCTG
TAGCTGGTGCTGGTGCTGCTTCTTCTGCAGCTGGTGCTGGAGCTGCTTCT
TCTGTAGCTGGTGCTGGAGCTGCTTCTTCTGTAGCTGGTTCTGGGGTTGC
TTCTTCTGCAGCTGGTGCTGGAGCTGCTTCTTCTGCAGCTGGTTCTGGGG
TTGCTTCTTCTGCAGCTGGTGCTGGAGCTGCTTCTTCTGTAGCTGGTTCT
GGAGCTGCTTCTTCTGTAGCTGGTGCTGGTGCTGCTTCTTCTGTAGCTGG
TGCTGTAGCTGGTGCTGGTGCTGCTTCTTCTGCAGCAGGTGCTGGAGCTG
CTTCTTCTGCAGCTGGTGCTGGGGTTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007846-exon-sc0000080-1491911889:535982..537656 | TCONS_00007846-exon-sc0000080-1491911889:535982..537656 | Clytia hemisphaerica | exon |
| TCONS_00007846-exon-sc0000080-1510915933:535982..537656 | TCONS_00007846-exon-sc0000080-1510915933:535982..537656 | Clytia hemisphaerica | exon |
| TCONS_00007846-exon-sc0000080-1575043694:535982..537656 | TCONS_00007846-exon-sc0000080-1575043694:535982..537656 | Clytia hemisphaerica | exon |
| TCONS_00007846-exon-sc0000080-1491911889:538320..538361 | TCONS_00007846-exon-sc0000080-1491911889:538320..538361 | Clytia hemisphaerica | exon |
| TCONS_00007846-exon-sc0000080-1510915933:538320..538361 | TCONS_00007846-exon-sc0000080-1510915933:538320..538361 | Clytia hemisphaerica | exon |
| TCONS_00007846-exon-sc0000080-1575043694:538320..538361 | TCONS_00007846-exon-sc0000080-1575043694:538320..538361 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:535982..538361 + |
Blast
The following BLAST results are available for this feature:
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