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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007856 ID=TCONS_00007856|Name=TCONS_00007856|organism=Clytia hemisphaerica|type=transcript|length=1569bp
CTGAAACTTCAAAGATCATTTTCTTCAGACGAAAATCTGTGAGATATTGT
CGAAGAAGAAAATTTGGAATAAATCTTCCGACGGTTTCGAGAGTTTATCC
AGCAGCCGTTGATTCAATCACTCTACAACACGAACTTGAAGAAGAAgatt
ataaaaagaagaaaagacttTTCATTCCTTGGAGCAAACGAGCTTCTTTC
ATAGCAGCTACTTATATAGAGAATCCTGAAACACTCACTCAACCACCTGT
AGTTACGACTTTCCAACGTCGAAAACAAGGACGTTTCGCATCTTTTCGTC
GTACACGATCAACAATCACAACTGAAACGACCACACAAAGTGTTTCTTCG
ACCAGAAAGTTCAATTTACGGCGCATGAATAGTTTAGATCGTAATACGAT
ACGATCGTTTCGAAGCAGCGCGTCCACTTTACGGAGACAAAACAGTGAGA
ATAACGCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTTCTTCGCTACAA
AAACAACAGAGCTTTGATGCTGGCTCCTTAAACCATCGGGATGCACGAGC
TCTTAAACAACGAAAAAGTAATCGCTATAAAGTGGACGGTGCTCAAAGTT
TCTTTGATAGATACCAAGATACTTTACGAGTTGATATGTTCTCCGTTGAC
TTGAATAAACTGACGATAAAAAGCAATAAAAGTGACGGTTCATCGACCAC
AAAATCCGTCACCCCTACGACCCCTCTCACACCGAACTCTACCGACGATA
AAGACTCGGTTTTCGATTACAGCGACGAACATTTATCGAAAGAATTTGAT
TACAAACTTGTCGGTAAAACGTACCAACAACTATTTTACATTCGTTCAAG
GCTTTCAGCGAGTGCGCGTAAAAGTGAATTTATGTGTGATGGTTCGTTTG
GATGTTCTGCTTGTGATCTGCAATGTTACCCTGAATGGACGAATTCGTAA
AAACTTGAACAAGAGAAAGTGGTAGAATGAGATAATGTTATGACTTGTGG
ATCGCCTTTGGTGAGATAAAACGGTGGCCTGATccaaaaactgtttttct
ttacgGCAAGTGACTATACTTGAAACTAATGAGCGTGAGAAACGAAAGTA
CAATCCAGTCTATAAGATCTTGTTTGTTTAGAAGGTTACCAAGGGGTCAA
TGAACGTTCTcagtgaaaatgtttttgatctCTCTACTTGATCCTAAATG
AGGAAGGAAATCAATTTATGGAATTAAAGAGAAAAGTTGAACATAAATTT
CTGATGGACTGTCAAGGAAGTCATTTTCTGTCAGCCATGTAAGTTGTCAC
AATGAATGTACGAGTTTTGCTGTGAATCTTTATTTTGAGATGTTTCGATC
TCAACTGTCAAGTTACCATCAATATGAACCTTTGCTAACTAATTCATAAA
AGAATTCGCCATTTTAGAAGGATTTCGATTTTTGTCCGAAATATTATTTA
TATCGTCCAATGTCTAACAATAtttgtaaatatatttttcgCAGCAATAT
TTTTCCTTTGTAGTTATTTTCTATTGTACATAAATacggaaaataaattt
tgaaaatttgacaaactaa Run BLAST on NCBI transcript from alignment at sc0000080:632723..640196+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007856 ID=TCONS_00007856|Name=TCONS_00007856|organism=Clytia hemisphaerica|type=transcript|length=7474bp|location=Sequence derived from alignment at sc0000080:632723..640196+ (Clytia hemisphaerica)
CTGAAACTTCAAAGATCATTTTCTTCAGACGAAAATCTGTGAGATATTGT
CGAAGAAGAAAATTTGGAATAAATCTTCCGACGGTTTCGAGTTGAGTATT
TTATTCGATTTCTTCAGATTTATTTGATGATTTGTTTGCATGTTTCTTTC
ATAAACTCGAGGAAGAGATTTTCATATTCAAGAGATATTGCTATTAATAT
GTCAGCCGGTTGTCTTGACTTAAAAAGAAGCCTCTCGGGCTtatgttttg
aaaactttcctaCAGACTGATTTTAAGTTCTCTATAAGAGAAGTCTTCAA
GATTTACCGAGTGGGAAATGATCGAATTTTTCTTGCATTCTCTACACTCG
TTGAAAGAAATCTTCAGTAAgtcaaatatttaatttctgTTTTAAAATGC
TTCGTATTGAAACGTTTCTGGTAATGTTATGTCGTTCTCGTTTAGTTTTT
CTCGGCTTTGAGCTAGTTTTTTTAGCTATATGCGATAAGCTCTTCCTTCT
CAGGCCTTGTTGATTTGATTTAAGCTACCTCTCAACTATAGTAAACAATG
TTTTTGGCTTCTTATCAATCCTTTGTTTTGTTGGAGGTTTGGCTtgacga
aaaatatttcaagcttttttattcaatttcagTTCGTGATGTTTTTTGAA
ACACTTTttaattctttgtttttatNGAAAACATTTCaagcttttttatt
caatttcagTTCGTGATGTTTTTTGAAACACTTTttaattctttgttttt
atgaCTCGTATTATTGCATACGTCTTTAGCTCGATAATTATACTACGATA
GGAAATTGAAGAATTTTATGAAGTATTTGTGACGACGATACTCGTTCGGT
CTGTATCAGAAAAATGCTCACAATAATACTTTGTGCATCTTTCATGCATG
AGAGAATGCATTTTAAGATGATGCAAAGAGCTTGAGATGAGTCTAGATGA
CGAATATATTGTGGCAGACCAACCTCCTTCCTGATATACTCATGCACGCA
AGTCGAACAATTTGTCAATATTCTATTCCAAgacatcaaaacacaaaaac
caTTGAAAGAAGAGGAGGGTGATTCAATGAGGTCCAATTTCAAAACATCA
TCAGTCATGATGCTAAAATGTACTTCAGATAGAGACAGAATGGAAAATCA
TACTTCATATTTCACTCTATAGATCACCAAAGAGTGTTTGTCCCGTACAA
AATCCTTTCTTTTGCAATGCAGATGATccgataaacatttttttatcttt
ttgtagCTTGACCTTTCTCTATACCTCTTGTCATTAGATTTTGCAATCAC
CTTTCTTCAGCATATGTTTCATATCATAATTTTTGACACCATCATTTTTT
TGCCCCATTTTTATTGAgtttatggatttttgagaactATTATAACCTCT
GTTTCTTTGCTCCGCTTGGTTTGGAGCCCGTAGCAAAATTTGAGatgatt
tgtcaaaaaaccCTTAATTTCCAGGAAAGGCGACTTTTAAACTTAACTTT
TAGCTTATTTAGGAAAAATTCCAATGACCTTCTAATCGGAAGGGTCCTTC
CTACTGGCTACTGGCTTCCTACTTAAATCCTACTCGTTTTGCACGCCCCT
GTATCAATGATTGCTCTACTTAATTTACTTCCACAGAATATAAATATCAA
AATGTTGGACGATGGAGTAAATTATCAGATTTTACAATTACATTTAAGTA
TGTAAGTATGATAAAGATCTTTTACAGTGACTCCTATctctcaacaacaa
aaaaagtcGGTCAAATTTGTCGACTCATTACATTCTGATATCCAGGAATT
GAAATCTTTTTAAGATCTCTGAATGCAATTATTTCTTTGGCTCCTGTTCT
TAATCCTATACGTTGACTACGGATTTTCATTCTCATTCTCTCTCTTATAA
CCTTATTTTATATCCTGCTAgctattatgacgtcataaatatatcgactt
tgtttttgatgaaaattaattacaattttttttctgcttaCAAGTTAACA
AAGTGTCTGATTAATTTCTCCTGAGATTCCATGCTGTTATTTCGTCATCC
TTCTGcgatgacaaagaaaaaaagtgctCTCTATACAAAAGCTTGTTAGA
TTGAAATTGTAAAAGATTGAAATTGGTTGTTAGCCTTTGcaagttcaata
ttttttactCTTTGAAAGATTTGTATGGTTGATAATTTTCTACCGGACGA
TTGatagatatttttttctttcgacTTTTTTCTGAGGTAAGATATCACTT
TCCGTCTTATCTTGTTCAGAAagcctcaaaattttcttctttttttgcag
ATCTTTTAATCCATGACAGGTCTGCTACAGATGAATTTACATTTTTGTTG
GAGTTGTTTGGCATTAAGCTTACCAGTAACCGACCTTGCGGTTTACAAAC
TTTTTACTTCTTTCTGTAGAAAAGAAAATGTGTTTTTATGTGACATGCTT
TTGAAGTTATGAGATCATTGGCATAATACGCTTGTTGATGCAACACTTCC
TTATATGACTCTCGTTATTTGGATATTTTATCAACCTTGTAGCCTTCCTG
GGCTTCATTGTGAAAATCCTCTTATGTCTAGTAAGCTGTAAGTTAAGTAA
TATCTCGTATGAATAACACCTGATTTGTGTCTTTCGGCAAAACTTTGTCA
ATGTCCTCTCGAACATGTCGTTAGTTTTTGTCTTGGTCTTTTACAATATA
TTGAATTTCGATAATCCTTTCCAGTCATTCATTAGTCATCCATCTCAAGA
TGTGTGTCCAAGCTCTCTTTAtatctcttttatatttttctctttttaca
tttaaaagttttaatggAAACATCTCTGTATATTGTCTCCATAATTTGAA
TGTCAAGCAGATCAATAAtctttcgaattacagagaattTGAGTTATAGA
GAGGCAAATTATCctggttcgagttatagagaggcGAATTATCCTGGCTC
GAGTTATAGAGAGGCGAATTATCctggttcgagttatagagactctacTA
TACTTCCATTGTTTAACTTATTCTGTATCAAAAATAGGAAATATTTCTGA
GGGAAAAGCTTTTGCACCGACAGGACTTGACGTATAACAGTCTGTCcagt
caaaaatttttgatgaggaAATGAGTTTTAAGCGGTCTTTCTTGGACAAA
CTACTCTTCCTTTTATAGATTCCTGGTTCAGTAATTAATTTCGATCAGAT
TTTCTAAACTATATTTATACTTTTGCTTGCTATCACTTCAGGGggctttt
ttaaagattttggcATCAACAGCGTTGAAATATTTCGATTTCCATCGCAT
TTTCTACAAACTTCTTGCCAACCGCACCAATTGGCTGATGAGGAAATTGA
AAGATTCTAATGACTCTCGTTTAGATGGGACCACCCTTTCACCTCTAAAA
CGAGAAGAATTTCTCAACAATTGACAAGATATATAAGTCAGTTTTGGATT
TAATTTGTTAATGATGTTATTGGGTGGTTACCAGACCTCCTATTGATATG
AttgttttcgaaagtttttCATCGATTAATTTTggaatgaagaaaaaata
acagaTTTTGGCAATCTAGAAATTTTACTCGAATCTTCAACACATAATGC
TTTGTGATTTCTAAATGCTAAATTCAAAATTGTCATcgaatttcattttg
aaatttgaatcttCACATAGACTTTTGCAAGAGTTCTGCCTTCAGGCAAA
TCAATCTATAGTATCTGAGAACTTTTTAAGGGTCAAATTTCAGTCTGTTT
GAAACATTAAACATTAAGAAGGGGCTTTTTGGAGTATCGTTTCGTCATAT
CATCGATAACTTGAACATTTGTCTGCTGACGTTTGCAGTGTGATTGATAA
GTGATTCTTAAAGCGATTATTGTCATCACATTTTTTTACTGATTTATGAT
TTCGCATGTGTTTCTTTAGAGTGGTCATGAGAAATCTTGTTTATGTCCTT
TCAGCAAATCTTGTTATTGCTACAAGTCGTGCTGTTGGTGTATTTTCCCT
TATAATAGTCTACTTGTCAAGACAGAAGGGTCTGGAATAAATATCGTTTA
CTCATATGGCCTGGTTGTTACGCGGGAAGGGTCCTGTTGCTTCAAACACG
CTGAGAAGGCATGAACGTCGTTTGGCAAAAGAGACTTGAATAGAATCTTG
GatataattttttctagccaGCGAACGTGACTGTCATGAGGTCATCTTTT
TATTGTGTTATTCTTAAGTTTGATGTATTTTCATGTGTGGAAAAAAATAA
TCTCAGTTGACGAGGGATGTACATTTTGCCAAAAAGATTCATGTCATGAA
AGATATTGTTTGTCGCTTGAAGTCTTCTTAGAGAGAAATTGTTATTGTTG
AACACCTCACTCTACAAAGCCTCTTGTTTGTCACCTCTTGCACTGGTCTG
TGGGACAAAGTCCTtctcaaccaatcagaattgAGCATTTGACTTCTCTC
ATCAAATGAGTTGTTCCACTTGATACAATTTCTCAAATGACGTCATCTCC
GCTTCTCTCAGCGCTACTTATTATATAGATGGCAGGACGAGCTTTTTGTT
CATAAAATCATATTAAATTTGATATCACTTTGATAAGCTTATAGACGAGC
CAGGAGCTGTTTTATGTCATTTCTTTTCTTTGCTTCAAATAATAAGGTAA
ATGATATGTTCTCGGTGGTCAAGTCATGAGAATTTCTCGGTTTGGATGAT
GAGTTTTGTAAGTTGCGTAAAGGTGTCGTAACTGATAGTAAAAGTTCAAG
CCAAAAAAGGGTTTTTACCTTTGAGGAAAACGAGTTGAACAAGTTTGTGC
TTTTATGATAATTAGTTATGATAAGCATGGCGTAACTGCTtgatattgtt
ttgttttgagaacGTCAACTTTTGCATTGATGTCATTTAAATAGTGCATT
GTATAACGACCACTAATTATTTTCCTCTATCGCCTTGTGTTTATAACTTT
CACTGTTTGTTTTTATAGGAGTTTATCCAGCAGCCGTTGATTCAATCACT
CTACAACACGAACTTGAAGAAGAAgattataaaaagaagaaaagacttTT
CATTCCTTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATATAGAGA
ATCCTGAAACACTCACTCAACCACCTGTAGTTACGACTTTCCAACGTCGA
AAACAAGGACGTTTCGCATCTTTTCGTCGTACACGATCAACAATCACAAC
TGAAACGACCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATTTACGGC
GCATGAATAGTTTAGATCGTAATACGATACGATCGTTTCGAAGCAGCGCG
TCCACTTTACGGAGACAAAACAGTGAGAATAACGCTACTTGGAAAAAGAA
GAGAATGAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTGATGCTG
GCTCCTTAAACCATCGGGATGCACGAGCTCTTAAACAACGAAAAAGTAAT
CGCTATAAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCAAGATAC
TTTACGAGTTGATATGTTCTCCGTTGACTTGAATAAACTGACGATAAAAA
GCAATAAAAGNGGACGAGCTTTTTGTTCATAAAATCATATTAAATTTGAT
ATCACTTTGATAAGCTTATAGACGAGCCAGGAGCTGTTTTATGTCATTTC
TTTTCTTTGCTTCAAATAATAAGGTAAATGATATGTTCTCGGTGGTCAAG
TCATGAGAATTTCTCGGTTTGGATGATGAGTTTTGTAAGTTGCGTAAAGG
TGTCGTAACTGATAGTAAAAGTTCAAGCCAAAAAAGGGTTTTTACCTTTG
AGGAAAACGAGTTGAACAAGTTTGTGCTTTTATGATAATTAGTTATGATA
AGCATGGCGTAACTGCTtgatattgttttgttttgagaacGTCAACTTTT
GCATTGATGTCATTTAAATAGTGCATTGTATAACGACCACTAATTATTTT
CCTCTATCGCCTTGTGTTTATAACTTTCACTGTTTGTTTTTATAGGAGTT
TATCCAGCAGCCGTTGATTCAATCACTCTACAACACGAACTTGAAGAAGA
AgattataaaaagaagaaaagacttTTCATTCCTTGGAGCAAACGAGCTT
CTTTCATAGCAGCTACTTATATAGAGAATCCTGAAACACTCACTCAACCA
CCTGTAGTTACGACTTTCCAACGTCGAAAACAAGGACGTTTCGCATCTTT
TCGTCGTACACGATCAACAATCACAACTGAAACGACCACACAAAGTGTTT
CTTCGACCAGAAAGTTCAATTTACGGCGCATGAATAGTTTAGATCGTAAT
ACGATACGATCGTTTCGAAGCAGCGCGTCCACTTTACGGAGACAAAACAG
TGAGAATAACGCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTTCTTCGC
TACAAAAACAACAGAGCTTTGATGCTGGCTCCTTAAACCATCGGGATGCA
CGAGCTCTTAAACAACGAAAAAGTAATCGCTATAAAGTGGACGGTGCTCA
AAGTTTCTTTGATAGATACCAAGATACTTTACGAGTTGATATGTTCTCCG
TTGACTTGAATAAACTGACGATAAAAAGCAATAAAAGTGACGGTTCATCG
ACCACAAAATCCGTCACCCCTACGACCCCTCTCACACCGAACTCTACCGA
CGATAAAGACTCGGTTTTCGATTACAGCGACGAACATTTATCGAAAGAAT
TTGATTACAAACTTGTCGGTAAAACGTACCAACAACTATTTTACATTCGT
TCAAGGCTTTCAGCGAGTGCGCGTAAAAGTGAATTTATGTGTGATGGTTC
GTTTGGATGTTCTGCTTGTGATCTGCAATGTTACCCTGAATGGACGAATT
CGTAAAAACTTGAACAAGAGAAAGTGGTAGAATGAGATAATGTTATGACT
TGTGGATCGCCTTTGGTGAGATAAAACGGTGGCCTGATccaaaaactgtt
tttctttacgGCAAGTGACTATACTTGAAACTAATGAGCGTGAGAAACGA
AAGTACAATCCAGTCTATAAGATCTTGTTTGTTTAGAAGGTTACCAAGGG
GTCAATGAACGTTCTcagtgaaaatgtttttgatctCTCTACTTGATCCT
AAATGAGGAAGGAAATCAATTTATGGAATTAAAGAGAAAAGTTGAACATA
AATTTCTGATGGACTGTCAAGGAAGTCATTTTCTGTCAGCCATGTAAGTT
GTCACAATGAATGTACGAGTTTTGCTGTGAATCTTTATTTTGAGATGTTT
CGATCTCAACTGTCAAGTTACCATCAATATGAACCTTTGCTAACTAATTC
ATAAAAGAATTCGCCATTTTAGAAGGATTTCGATTTTTGTCCGAAATATT
ATTTATATCGTCCAATGTCTAACAATAtttgtaaatatatttttcgCAGC
AATATTTTTCCTTTGTAGTTATTTTCTATTGTACATAAATacggaaaata
aattttgaaaatttgacaaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007856-exon-sc0000080-1491911889:632723..632812 | TCONS_00007856-exon-sc0000080-1491911889:632723..632812 | Clytia hemisphaerica | exon |
| TCONS_00007856-exon-sc0000080-1510915933:632723..632812 | TCONS_00007856-exon-sc0000080-1510915933:632723..632812 | Clytia hemisphaerica | exon |
| TCONS_00007856-exon-sc0000080-1575043694:632723..632812 | TCONS_00007856-exon-sc0000080-1575043694:632723..632812 | Clytia hemisphaerica | exon |
| TCONS_00007856-exon-sc0000080-1491911889:638718..640196 | TCONS_00007856-exon-sc0000080-1491911889:638718..640196 | Clytia hemisphaerica | exon |
| TCONS_00007856-exon-sc0000080-1510915933:638718..640196 | TCONS_00007856-exon-sc0000080-1510915933:638718..640196 | Clytia hemisphaerica | exon |
| TCONS_00007856-exon-sc0000080-1575043694:638718..640196 | TCONS_00007856-exon-sc0000080-1575043694:638718..640196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000080 | supercontig | sc0000080:632723..640196 + |
Blast
The following BLAST results are available for this feature:
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