TCONS_00007861 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007861
Unique NameTCONS_00007861
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007861 ID=TCONS_00007861|Name=TCONS_00007861|organism=Clytia hemisphaerica|type=transcript|length=2847bp
GTTGGTGTATTTTCCCTTATAATAGTCTACTTGTCAAGACAGAAGGGTCT
GGAATAAATATCGTTTACTCATATGGCCTGGTTGTTACGCGGGAAGGGTC
CTGTTGCTTCAAACACGCTGAGAAGGCATGAACGTCGTTTGGCAAAAGAG
ACTTGAATAGAATCTTGGatataattttttctagccaGCGAACGTGACTG
TCATGAGGTCATCTTTTTATTGTGTTATTCTTAAGTTTGATGTATTTTCA
TGTGTGGAAAAAAATAATCTCAGTTGACGAGGGATGTACATTTTGCCAAA
AAGATTCATGTCATGAAAGATATTGTTTGTCGCTTGAAGTCTTCTTAGAG
AGAAATTGTTATTGTTGAACACCTCACTCTACAAAGCCTCTTGTTTGTCA
CCTCTTGCACTGGTCTGTGGGACAAAGTCCTtctcaaccaatcagaattg
AGCATTTGACTTCTCTCATCAAATGAGTTGTTCCACTTGATACAATTTCT
CAAATGACGTCATCTCCGCTTCTCTCAGCGCTACTTATTATATAGATGGC
AGGACGAGCTTTTTGTTCATAAAATCATATTAAATTTGATATCACTTTGA
TAAGCTTATAGACGAGCCAGGAGCTGTTTTATGTCATTTCTTTTCTTTGC
TTCAAATAATAAGGAGTTTATCCAGCAGCCGTTGATTCAATCACTCTACA
ACACGAACTTGAAGAAGAAgattataaaaagaagaaaagacttTTCATTC
CTTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATATAGAGAATCCT
GAAACACTCACTCAACCACCTGTAGTTACGACTTTCCAACGTCGAAAACA
AGGACGTTTCGCATCTTTTCGTCGTACACGATCAACAATCACAACTGAAA
CGACCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATTTACGGCGCATG
AATAGTTTAGATCGTAATACGATACGATCGTTTCGAAGCAGCGCGTCCAC
TTTACGGAGACAAAACAGTGAGAATAACGCTACTTGGAAAAAGAAGAGAA
TGAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTGATGCTGGCTCC
TTAAACCATCGGGATGCACGAGCTCTTAAACAACGAAAAAGTAATCGCTA
TAAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCAAGATACTTTAC
GAGTTGATATGTTCTCCGTTGACTTGAATAAACTGACGATAAAAAGCAAT
AAAAGNGGACGAGCTTTTTGTTCATAAAATCATATTAAATTTGATATCAC
TTTGATAAGCTTATAGACGAGCCAGGAGCTGTTTTATGTCATTTCTTTTC
TTTGCTTCAAATAATAAGGAGTTTATCCAGCAGCCGTTGATTCAATCACT
CTACAACACGAACTTGAAGAAGAAgattataaaaagaagaaaagacttTT
CATTCCTTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATATAGAGA
ATCCTGAAACACTCACTCAACCACCTGTAGTTACGACTTTCCAACGTCGA
AAACAAGGACGTTTCGCATCTTTTCGTCGTACACGATCAACAATCACAAC
TGAAACGACCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATTTACGGC
GCATGAATAGTTTAGATCGTAATACGATACGATCGTTTCGAAGCAGCGCG
TCCACTTTACGGAGACAAAACAGTGAGAATAACGCTACTTGGAAAAAGAA
GAGAATGAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTGATGCTG
GCTCCTTAAACCATCGGGATGCACGAGCTCTTAAACAACGAAAAAGTAAT
CGCTATAAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCAAGATAC
TTTACGAGTTGATATGTTCTCCGTTGACTTGAATAAACTGACGATAAAAA
GCAATAAAAGTGACGGTTCATCGACCACAAAATCCGTCACCCCTACGACC
CCTCTCACACCGAACTCTACCGACGATAAAGACTCGGTTTTCGATTACAG
CGACGAACATTTATCGAAAGAATTTGATTACAAACTTGTCGGTAAAACGT
ACCAACAACTATTTTACATTCGTTCAAGGCTTTCAGCGAGTGCGCGTAAA
AGTGAATTTATGTGTGATGGTTCGTTTGGATGTTCTGCTTGTGATCTGCA
ATGTTACCCTGAATGGACGAATTCGTAAAAACTTGAACAAGAGAAAGTGG
TAGAATGAGATAATGTTATGACTTGTGGATCGCCTTTGGTGAGATAAAAC
GGTGGCCTGATccaaaaactgtttttctttacgGCAAGTGACTATACTTG
AAACTAATGAGCGTGAGAAACGAAAGTACAATCCAGTCTATAAGATCTTG
TTTGTTTAGAAGGTTACCAAGGGGTCAATGAACGTTCTcagtgaaaatgt
ttttgatctCTCTACTTGATCCTAAATGAGGAAGGAAATCAATTTATGGA
ATTAAAGAGAAAAGTTGAACATAAATTTCTGATGGACTGTCAAGGAAGTC
ATTTTCTGTCAGCCATGTAAGTTGTCACAATGAATGTACGAGTTTTGCTG
TGAATCTTTATTTTGAGATGTTTCGATCTCAACTGTCAAGTTACCATCAA
TATGAACCTTTGCTAACTAATTCATAAAAGAATTCGCCATTTTAGAAGGA
TTTCGATTTTTGTCCGAAATATTATTTATATCGTCCAATGTCTAACAATA
tttgtaaatatatttttcgCAGCAATATTTTTCCTTTGTAGTTATTTTCT
ATTGTACATAAATacggaaaataaattttgaaaatttgacaaactaa
Run BLAST on NCBI

transcript from alignment at sc0000080:636706..640196+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007861 ID=TCONS_00007861|Name=TCONS_00007861|organism=Clytia hemisphaerica|type=transcript|length=3491bp|location=Sequence derived from alignment at sc0000080:636706..640196+ (Clytia hemisphaerica)
GTTGGTGTATTTTCCCTTATAATAGTCTACTTGTCAAGACAGAAGGGTCT
GGAATAAATATCGTTTACTCATATGGCCTGGTTGTTACGCGGGAAGGGTC
CTGTTGCTTCAAACACGCTGAGAAGGCATGAACGTCGTTTGGCAAAAGAG
ACTTGAATAGAATCTTGGatataattttttctagccaGCGAACGTGACTG
TCATGAGGTCATCTTTTTATTGTGTTATTCTTAAGTTTGATGTATTTTCA
TGTGTGGAAAAAAATAATCTCAGTTGACGAGGGATGTACATTTTGCCAAA
AAGATTCATGTCATGAAAGATATTGTTTGTCGCTTGAAGTCTTCTTAGAG
AGAAATTGTTATTGTTGAACACCTCACTCTACAAAGCCTCTTGTTTGTCA
CCTCTTGCACTGGTCTGTGGGACAAAGTCCTtctcaaccaatcagaattg
AGCATTTGACTTCTCTCATCAAATGAGTTGTTCCACTTGATACAATTTCT
CAAATGACGTCATCTCCGCTTCTCTCAGCGCTACTTATTATATAGATGGC
AGGACGAGCTTTTTGTTCATAAAATCATATTAAATTTGATATCACTTTGA
TAAGCTTATAGACGAGCCAGGAGCTGTTTTATGTCATTTCTTTTCTTTGC
TTCAAATAATAAGGTAAATGATATGTTCTCGGTGGTCAAGTCATGAGAAT
TTCTCGGTTTGGATGATGAGTTTTGTAAGTTGCGTAAAGGTGTCGTAACT
GATAGTAAAAGTTCAAGCCAAAAAAGGGTTTTTACCTTTGAGGAAAACGA
GTTGAACAAGTTTGTGCTTTTATGATAATTAGTTATGATAAGCATGGCGT
AACTGCTtgatattgttttgttttgagaacGTCAACTTTTGCATTGATGT
CATTTAAATAGTGCATTGTATAACGACCACTAATTATTTTCCTCTATCGC
CTTGTGTTTATAACTTTCACTGTTTGTTTTTATAGGAGTTTATCCAGCAG
CCGTTGATTCAATCACTCTACAACACGAACTTGAAGAAGAAgattataaa
aagaagaaaagacttTTCATTCCTTGGAGCAAACGAGCTTCTTTCATAGC
AGCTACTTATATAGAGAATCCTGAAACACTCACTCAACCACCTGTAGTTA
CGACTTTCCAACGTCGAAAACAAGGACGTTTCGCATCTTTTCGTCGTACA
CGATCAACAATCACAACTGAAACGACCACACAAAGTGTTTCTTCGACCAG
AAAGTTCAATTTACGGCGCATGAATAGTTTAGATCGTAATACGATACGAT
CGTTTCGAAGCAGCGCGTCCACTTTACGGAGACAAAACAGTGAGAATAAC
GCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTTCTTCGCTACAAAAACA
ACAGAGCTTTGATGCTGGCTCCTTAAACCATCGGGATGCACGAGCTCTTA
AACAACGAAAAAGTAATCGCTATAAAGTGGACGGTGCTCAAAGTTTCTTT
GATAGATACCAAGATACTTTACGAGTTGATATGTTCTCCGTTGACTTGAA
TAAACTGACGATAAAAAGCAATAAAAGNGGACGAGCTTTTTGTTCATAAA
ATCATATTAAATTTGATATCACTTTGATAAGCTTATAGACGAGCCAGGAG
CTGTTTTATGTCATTTCTTTTCTTTGCTTCAAATAATAAGGTAAATGATA
TGTTCTCGGTGGTCAAGTCATGAGAATTTCTCGGTTTGGATGATGAGTTT
TGTAAGTTGCGTAAAGGTGTCGTAACTGATAGTAAAAGTTCAAGCCAAAA
AAGGGTTTTTACCTTTGAGGAAAACGAGTTGAACAAGTTTGTGCTTTTAT
GATAATTAGTTATGATAAGCATGGCGTAACTGCTtgatattgttttgttt
tgagaacGTCAACTTTTGCATTGATGTCATTTAAATAGTGCATTGTATAA
CGACCACTAATTATTTTCCTCTATCGCCTTGTGTTTATAACTTTCACTGT
TTGTTTTTATAGGAGTTTATCCAGCAGCCGTTGATTCAATCACTCTACAA
CACGAACTTGAAGAAGAAgattataaaaagaagaaaagacttTTCATTCC
TTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATATAGAGAATCCTG
AAACACTCACTCAACCACCTGTAGTTACGACTTTCCAACGTCGAAAACAA
GGACGTTTCGCATCTTTTCGTCGTACACGATCAACAATCACAACTGAAAC
GACCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATTTACGGCGCATGA
ATAGTTTAGATCGTAATACGATACGATCGTTTCGAAGCAGCGCGTCCACT
TTACGGAGACAAAACAGTGAGAATAACGCTACTTGGAAAAAGAAGAGAAT
GAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTGATGCTGGCTCCT
TAAACCATCGGGATGCACGAGCTCTTAAACAACGAAAAAGTAATCGCTAT
AAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCAAGATACTTTACG
AGTTGATATGTTCTCCGTTGACTTGAATAAACTGACGATAAAAAGCAATA
AAAGTGACGGTTCATCGACCACAAAATCCGTCACCCCTACGACCCCTCTC
ACACCGAACTCTACCGACGATAAAGACTCGGTTTTCGATTACAGCGACGA
ACATTTATCGAAAGAATTTGATTACAAACTTGTCGGTAAAACGTACCAAC
AACTATTTTACATTCGTTCAAGGCTTTCAGCGAGTGCGCGTAAAAGTGAA
TTTATGTGTGATGGTTCGTTTGGATGTTCTGCTTGTGATCTGCAATGTTA
CCCTGAATGGACGAATTCGTAAAAACTTGAACAAGAGAAAGTGGTAGAAT
GAGATAATGTTATGACTTGTGGATCGCCTTTGGTGAGATAAAACGGTGGC
CTGATccaaaaactgtttttctttacgGCAAGTGACTATACTTGAAACTA
ATGAGCGTGAGAAACGAAAGTACAATCCAGTCTATAAGATCTTGTTTGTT
TAGAAGGTTACCAAGGGGTCAATGAACGTTCTcagtgaaaatgtttttga
tctCTCTACTTGATCCTAAATGAGGAAGGAAATCAATTTATGGAATTAAA
GAGAAAAGTTGAACATAAATTTCTGATGGACTGTCAAGGAAGTCATTTTC
TGTCAGCCATGTAAGTTGTCACAATGAATGTACGAGTTTTGCTGTGAATC
TTTATTTTGAGATGTTTCGATCTCAACTGTCAAGTTACCATCAATATGAA
CCTTTGCTAACTAATTCATAAAAGAATTCGCCATTTTAGAAGGATTTCGA
TTTTTGTCCGAAATATTATTTATATCGTCCAATGTCTAACAATAtttgta
aatatatttttcgCAGCAATATTTTTCCTTTGTAGTTATTTTCTATTGTA
CATAAATacggaaaataaattttgaaaatttgacaaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004452XLOC_004452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007861-exon-sc0000080-1491911889:636706..637368TCONS_00007861-exon-sc0000080-1491911889:636706..637368Clytia hemisphaericaexon
TCONS_00007861-exon-sc0000080-1510915933:636706..637368TCONS_00007861-exon-sc0000080-1510915933:636706..637368Clytia hemisphaericaexon
TCONS_00007861-exon-sc0000080-1575043694:636706..637368TCONS_00007861-exon-sc0000080-1575043694:636706..637368Clytia hemisphaericaexon
TCONS_00007861-exon-sc0000080-1491911889:637691..638395TCONS_00007861-exon-sc0000080-1491911889:637691..638395Clytia hemisphaericaexon
TCONS_00007861-exon-sc0000080-1510915933:637691..638395TCONS_00007861-exon-sc0000080-1510915933:637691..638395Clytia hemisphaericaexon
TCONS_00007861-exon-sc0000080-1575043694:637691..638395TCONS_00007861-exon-sc0000080-1575043694:637691..638395Clytia hemisphaericaexon
TCONS_00007861-exon-sc0000080-1491911889:638718..640196TCONS_00007861-exon-sc0000080-1491911889:638718..640196Clytia hemisphaericaexon
TCONS_00007861-exon-sc0000080-1510915933:638718..640196TCONS_00007861-exon-sc0000080-1510915933:638718..640196Clytia hemisphaericaexon
TCONS_00007861-exon-sc0000080-1575043694:638718..640196TCONS_00007861-exon-sc0000080-1575043694:638718..640196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:636706..640196 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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