TCONS_00007862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007862
Unique NameTCONS_00007862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2142

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007862 ID=TCONS_00007862|Name=TCONS_00007862|organism=Clytia hemisphaerica|type=transcript|length=2142bp
GTTGGTGTATTTTCCCTTATAATAGTCTACTTGTCAAGACAGAAGGGTCT
GGAATAAATATCGTTTACTCATATGGCCTGGTTGTTACGCGGGAAGGGTC
CTGTTGCTTCAAACACGCTGAGAAGGCATGAACGTCGTTTGGCAAAAGAG
ACTTGAATAGAATCTTGGatataattttttctagccaGCGAACGTGACTG
TCATGAGGTCATCTTTTTATTGTGTTATTCTTAAGTTTGATGTATTTTCA
TGTGTGGAAAAAAATAATCTCAGTTGACGAGGGATGTACATTTTGCCAAA
AAGATTCATGTCATGAAAGATATTGTTTGTCGCTTGAAGTCTTCTTAGAG
AGAAATTGTTATTGTTGAACACCTCACTCTACAAAGCCTCTTGTTTGTCA
CCTCTTGCACTGGTCTGTGGGACAAAGTCCTtctcaaccaatcagaattg
AGCATTTGACTTCTCTCATCAAATGAGTTGTTCCACTTGATACAATTTCT
CAAATGACGTCATCTCCGCTTCTCTCAGCGCTACTTATTATATAGATGGC
AGGACGAGCTTTTTGTTCATAAAATCATATTAAATTTGATATCACTTTGA
TAAGCTTATAGACGAGCCAGGAGCTGTTTTATGTCATTTCTTTTCTTTGC
TTCAAATAATAAGGAGTTTATCCAGCAGCCGTTGATTCAATCACTCTACA
ACACGAACTTGAAGAAGAAgattataaaaagaagaaaagacttTTCATTC
CTTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATATAGAGAATCCT
GAAACACTCACTCAACCACCTGTAGTTACGACTTTCCAACGTCGAAAACA
AGGACGTTTCGCATCTTTTCGTCGTACACGATCAACAATCACAACTGAAA
CGACCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATTTACGGCGCATG
AATAGTTTAGATCGTAATACGATACGATCGTTTCGAAGCAGCGCGTCCAC
TTTACGGAGACAAAACAGTGAGAATAACGCTACTTGGAAAAAGAAGAGAA
TGAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTGATGCTGGCTCC
TTAAACCATCGGGATGCACGAGCTCTTAAACAACGAAAAAGTAATCGCTA
TAAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCAAGATACTTTAC
GAGTTGATATGTTCTCCGTTGACTTGAATAAACTGACGATAAAAAGCAAT
AAAAGTGACGGTTCATCGACCACAAAATCCGTCACCCCTACGACCCCTCT
CACACCGAACTCTACCGACGATAAAGACTCGGTTTTCGATTACAGCGACG
AACATTTATCGAAAGAATTTGATTACAAACTTGTCGGTAAAACGTACCAA
CAACTATTTTACATTCGTTCAAGGCTTTCAGCGAGTGCGCGTAAAAGTGA
ATTTATGTGTGATGGTTCGTTTGGATGTTCTGCTTGTGATCTGCAATGTT
ACCCTGAATGGACGAATTCGTAAAAACTTGAACAAGAGAAAGTGGTAGAA
TGAGATAATGTTATGACTTGTGGATCGCCTTTGGTGAGATAAAACGGTGG
CCTGATccaaaaactgtttttctttacgGCAAGTGACTATACTTGAAACT
AATGAGCGTGAGAAACGAAAGTACAATCCAGTCTATAAGATCTTGTTTGT
TTAGAAGGTTACCAAGGGGTCAATGAACGTTCTcagtgaaaatgtttttg
atctCTCTACTTGATCCTAAATGAGGAAGGAAATCAATTTATGGAATTAA
AGAGAAAAGTTGAACATAAATTTCTGATGGACTGTCAAGGAAGTCATTTT
CTGTCAGCCATGTAAGTTGTCACAATGAATGTACGAGTTTTGCTGTGAAT
CTTTATTTTGAGATGTTTCGATCTCAACTGTCAAGTTACCATCAATATGA
ACCTTTGCTAACTAATTCATAAAAGAATTCGCCATTTTAGAAGGATTTCG
ATTTTTGTCCGAAATATTATTTATATCGTCCAATGTCTAACAATAtttgt
aaatatatttttcgCAGCAATATTTTTCCTTTGTAGTTATTTTCTATTGT
ACATAAATacggaaaataaattttgaaaatttgacaaactaa
Run BLAST on NCBI

transcript from alignment at sc0000080:636706..640196+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007862 ID=TCONS_00007862|Name=TCONS_00007862|organism=Clytia hemisphaerica|type=transcript|length=3491bp|location=Sequence derived from alignment at sc0000080:636706..640196+ (Clytia hemisphaerica)
GTTGGTGTATTTTCCCTTATAATAGTCTACTTGTCAAGACAGAAGGGTCT
GGAATAAATATCGTTTACTCATATGGCCTGGTTGTTACGCGGGAAGGGTC
CTGTTGCTTCAAACACGCTGAGAAGGCATGAACGTCGTTTGGCAAAAGAG
ACTTGAATAGAATCTTGGatataattttttctagccaGCGAACGTGACTG
TCATGAGGTCATCTTTTTATTGTGTTATTCTTAAGTTTGATGTATTTTCA
TGTGTGGAAAAAAATAATCTCAGTTGACGAGGGATGTACATTTTGCCAAA
AAGATTCATGTCATGAAAGATATTGTTTGTCGCTTGAAGTCTTCTTAGAG
AGAAATTGTTATTGTTGAACACCTCACTCTACAAAGCCTCTTGTTTGTCA
CCTCTTGCACTGGTCTGTGGGACAAAGTCCTtctcaaccaatcagaattg
AGCATTTGACTTCTCTCATCAAATGAGTTGTTCCACTTGATACAATTTCT
CAAATGACGTCATCTCCGCTTCTCTCAGCGCTACTTATTATATAGATGGC
AGGACGAGCTTTTTGTTCATAAAATCATATTAAATTTGATATCACTTTGA
TAAGCTTATAGACGAGCCAGGAGCTGTTTTATGTCATTTCTTTTCTTTGC
TTCAAATAATAAGGTAAATGATATGTTCTCGGTGGTCAAGTCATGAGAAT
TTCTCGGTTTGGATGATGAGTTTTGTAAGTTGCGTAAAGGTGTCGTAACT
GATAGTAAAAGTTCAAGCCAAAAAAGGGTTTTTACCTTTGAGGAAAACGA
GTTGAACAAGTTTGTGCTTTTATGATAATTAGTTATGATAAGCATGGCGT
AACTGCTtgatattgttttgttttgagaacGTCAACTTTTGCATTGATGT
CATTTAAATAGTGCATTGTATAACGACCACTAATTATTTTCCTCTATCGC
CTTGTGTTTATAACTTTCACTGTTTGTTTTTATAGGAGTTTATCCAGCAG
CCGTTGATTCAATCACTCTACAACACGAACTTGAAGAAGAAgattataaa
aagaagaaaagacttTTCATTCCTTGGAGCAAACGAGCTTCTTTCATAGC
AGCTACTTATATAGAGAATCCTGAAACACTCACTCAACCACCTGTAGTTA
CGACTTTCCAACGTCGAAAACAAGGACGTTTCGCATCTTTTCGTCGTACA
CGATCAACAATCACAACTGAAACGACCACACAAAGTGTTTCTTCGACCAG
AAAGTTCAATTTACGGCGCATGAATAGTTTAGATCGTAATACGATACGAT
CGTTTCGAAGCAGCGCGTCCACTTTACGGAGACAAAACAGTGAGAATAAC
GCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTTCTTCGCTACAAAAACA
ACAGAGCTTTGATGCTGGCTCCTTAAACCATCGGGATGCACGAGCTCTTA
AACAACGAAAAAGTAATCGCTATAAAGTGGACGGTGCTCAAAGTTTCTTT
GATAGATACCAAGATACTTTACGAGTTGATATGTTCTCCGTTGACTTGAA
TAAACTGACGATAAAAAGCAATAAAAGNGGACGAGCTTTTTGTTCATAAA
ATCATATTAAATTTGATATCACTTTGATAAGCTTATAGACGAGCCAGGAG
CTGTTTTATGTCATTTCTTTTCTTTGCTTCAAATAATAAGGTAAATGATA
TGTTCTCGGTGGTCAAGTCATGAGAATTTCTCGGTTTGGATGATGAGTTT
TGTAAGTTGCGTAAAGGTGTCGTAACTGATAGTAAAAGTTCAAGCCAAAA
AAGGGTTTTTACCTTTGAGGAAAACGAGTTGAACAAGTTTGTGCTTTTAT
GATAATTAGTTATGATAAGCATGGCGTAACTGCTtgatattgttttgttt
tgagaacGTCAACTTTTGCATTGATGTCATTTAAATAGTGCATTGTATAA
CGACCACTAATTATTTTCCTCTATCGCCTTGTGTTTATAACTTTCACTGT
TTGTTTTTATAGGAGTTTATCCAGCAGCCGTTGATTCAATCACTCTACAA
CACGAACTTGAAGAAGAAgattataaaaagaagaaaagacttTTCATTCC
TTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATATAGAGAATCCTG
AAACACTCACTCAACCACCTGTAGTTACGACTTTCCAACGTCGAAAACAA
GGACGTTTCGCATCTTTTCGTCGTACACGATCAACAATCACAACTGAAAC
GACCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATTTACGGCGCATGA
ATAGTTTAGATCGTAATACGATACGATCGTTTCGAAGCAGCGCGTCCACT
TTACGGAGACAAAACAGTGAGAATAACGCTACTTGGAAAAAGAAGAGAAT
GAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTGATGCTGGCTCCT
TAAACCATCGGGATGCACGAGCTCTTAAACAACGAAAAAGTAATCGCTAT
AAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCAAGATACTTTACG
AGTTGATATGTTCTCCGTTGACTTGAATAAACTGACGATAAAAAGCAATA
AAAGTGACGGTTCATCGACCACAAAATCCGTCACCCCTACGACCCCTCTC
ACACCGAACTCTACCGACGATAAAGACTCGGTTTTCGATTACAGCGACGA
ACATTTATCGAAAGAATTTGATTACAAACTTGTCGGTAAAACGTACCAAC
AACTATTTTACATTCGTTCAAGGCTTTCAGCGAGTGCGCGTAAAAGTGAA
TTTATGTGTGATGGTTCGTTTGGATGTTCTGCTTGTGATCTGCAATGTTA
CCCTGAATGGACGAATTCGTAAAAACTTGAACAAGAGAAAGTGGTAGAAT
GAGATAATGTTATGACTTGTGGATCGCCTTTGGTGAGATAAAACGGTGGC
CTGATccaaaaactgtttttctttacgGCAAGTGACTATACTTGAAACTA
ATGAGCGTGAGAAACGAAAGTACAATCCAGTCTATAAGATCTTGTTTGTT
TAGAAGGTTACCAAGGGGTCAATGAACGTTCTcagtgaaaatgtttttga
tctCTCTACTTGATCCTAAATGAGGAAGGAAATCAATTTATGGAATTAAA
GAGAAAAGTTGAACATAAATTTCTGATGGACTGTCAAGGAAGTCATTTTC
TGTCAGCCATGTAAGTTGTCACAATGAATGTACGAGTTTTGCTGTGAATC
TTTATTTTGAGATGTTTCGATCTCAACTGTCAAGTTACCATCAATATGAA
CCTTTGCTAACTAATTCATAAAAGAATTCGCCATTTTAGAAGGATTTCGA
TTTTTGTCCGAAATATTATTTATATCGTCCAATGTCTAACAATAtttgta
aatatatttttcgCAGCAATATTTTTCCTTTGTAGTTATTTTCTATTGTA
CATAAATacggaaaataaattttgaaaatttgacaaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004452XLOC_004452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007862-exon-sc0000080-1491911889:636706..637368TCONS_00007862-exon-sc0000080-1491911889:636706..637368Clytia hemisphaericaexon
TCONS_00007862-exon-sc0000080-1510915933:636706..637368TCONS_00007862-exon-sc0000080-1510915933:636706..637368Clytia hemisphaericaexon
TCONS_00007862-exon-sc0000080-1575043694:636706..637368TCONS_00007862-exon-sc0000080-1575043694:636706..637368Clytia hemisphaericaexon
TCONS_00007862-exon-sc0000080-1491911889:638718..640196TCONS_00007862-exon-sc0000080-1491911889:638718..640196Clytia hemisphaericaexon
TCONS_00007862-exon-sc0000080-1510915933:638718..640196TCONS_00007862-exon-sc0000080-1510915933:638718..640196Clytia hemisphaericaexon
TCONS_00007862-exon-sc0000080-1575043694:638718..640196TCONS_00007862-exon-sc0000080-1575043694:638718..640196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:636706..640196 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0485512	0.341796	0.263399	0.201326	1.43942	1.563	1.20562	1.00159	0.697546	1.68435	1.05405	0.719678	1.20958	1.41784	1.25246	1.97604	0.709004	1.7339	1.44214	1.59089	1.84126	1.33299	1.7314	1.26915	8.17287	5.22156	3.25477	3.14867
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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