TCONS_00007875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007875
Unique NameTCONS_00007875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007875 ID=TCONS_00007875|Name=TCONS_00007875|organism=Clytia hemisphaerica|type=transcript|length=2238bp
TAGGGGCGACAATGATTTAAATGACAATTTCACCAAAGAAAAGTATGCAA
TCGAAATGCTTAAAAAGCAGCCACCAAGGCCTGCTGTGAAAGGCGCaaga
gccaaatttaaaaagcaaaacaatggTTCATTAGTGCCAAGTGGTGATAA
TGACAACAGCGAAGGAGAGGAAGATGACCAGGGTGAAGAAGAGGAGAGCG
AGGAAAGCGAACCTGAACCCGAACCTGAACCCAAACCTGAACCCAAACCT
GAACCTGAACCAACTCCGCCTCCACCCGCCGCCCCTACCAAACAAACCAC
CTCATCTAGCGTTATCTCGTCCAATAGAACATCGACCTTGAATAATGATG
TAGATACATCAAATAGTTTAACTAAGACTACTATTAAATCTCGTTTCGGT
GACCGTGATCGAGATGATAAGAAAGACACTAATACTTCAACCTCGGTGAC
TACTGCCAAAACAACGACAAGTTTCGGGAGTAGATACGGCAGGCGTGACC
CTGAACCCGAACCTGTTACAACAACGAAATCAACGGTCGGTAGTCGATTT
GGTACTACCACAACATCTTCACGAATCACCAGCTCTTTTGATAAGAAACC
TGACGACAACACCTCCTCGACTCGTCCCAGTCTTCAAAATCGACTCAATC
CGAAGCGGGATGAAAAAGAGGAGAATGACACCAATTCAGTGTTGAATCGA
TACCGCTTGAACAAAAGCAAAACGAACGATGACAACAACTGGCGATCATC
ACGGAAGAAAGAGGACGAAGATAACCAAGAAACAGAGACACAGCCTTCGA
CGAGGCGAACGACACGAACTTACGATACTGGGGGTAGCACCACTGATACA
ACCTCCACACGAAGAACCAATCGTACATCCACTGATGACGATTCAAGCTC
TCGCATGAGTATCGCCGAAAGGCTACATAAAAAGAATCAAGAACTGCTTG
CAACAACTTCAGATAATAACAATTCATCGGGCAGATCATGGCAACGCTCT
TCAAACCCTTCGACGACCTCTTCAACTTCATCTTCGGACACGGGGGATAC
AAAAGATCTACAACGAAAACTCGACCAAGCTGTCAAAGAAGTAGAAGAAT
ACAAATCCAagtatgaaaaaatgaaaaaggaaaaagaagaattagAAAAA
CAACTTAGTCAATATAAAGAAGATATCGATaaAGTGCAAGATCTAAAGAG
CGACAATATACGTCTGAAAGATGAGAATGGGGCGCTTATCAGAGTTATTA
GTAAATTATCACGTACCCCTGCTTCATCTTCTTCGTGAGTCGTGGATCGT
CCGCTGCTTCCTTGtgaattattatattattattattgctGAGGTGCTGC
TGGTGCTACCGAGGAGAGATGAGCCGctgattaaatttttttaaataaga
aagaGAGAACTTTTTATACTACCTTTCATAGAACAGTTGTTTtaataaat
gaagaagaagaaggatataaacaacaaaatacaaCGTCCCAACAAATTCC
AGTGAATATTCACGCTCACCCTCGTTCGATGAATTGTGTCCGGGCTCACG
ATATTGGACATGATCGCAGTGCGTGTTTCCATAACAGTAATGAGATATCT
GTGAAACACGAATATACCGACTGACATGCTCTGTCGCTCAATGGTCAACG
CAGTTAATGTtttctgaaatctttttttatgaataaacTTATTGAAGAAG
TGCAGGTATTTTGGTGGTGAAAAAGTGATATTAAGAAACAGCTTTTTGAA
AAGGATTGGATTCCTTAGAGATTGATTCtctttgattattttatttacaa
aaagaaaagacaaaTTCTCCTTCTTTTTCGTACCTATGAATTCGATTGAC
TTCTGCACTGAAGcgttttgttgtctttttatgCTAGTGAGAAATGAGAC
GACTCATCAGACGAATTgatcattatcatcatcatcaacattttcacact
ttttcatcaaatttgagaTTAGAATTCCACAGTAACGTTGTTTGTATTAT
CAAAAGATAttaataattatatttttctattagTCCAACATGAtttgcta
aaaaaaatttttgagtcCGTTTGTAGGTTGAaacgaaaagaagaaaaaaa
gattaatttGACAACGTTAAAAAATTATTcgtttgaaacattcttcttcC
TTTCTTTCAAACGCGTCCCATGTCAAGTTTATAAGCATAAGACTTGTGAA
AGCAAATTCAGGTTTAGATTTAAGTCCTGACCTCGTGA
Run BLAST on NCBI

transcript from alignment at sc0000080:170998..177128-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007875 ID=TCONS_00007875|Name=TCONS_00007875|organism=Clytia hemisphaerica|type=transcript|length=6131bp|location=Sequence derived from alignment at sc0000080:170998..177128- (Clytia hemisphaerica)
TAGGGGCGACAATGATTTAAATGAGTAAGTTTATTTGACAAATTTCCATT
TAAAAACTTTTTCTTTTAAATATCAAATAGTGGAAACCTGAATCAAATAA
TACCCTTTAAAAGTCTTTTATTGAAATTCTACGAATAAATCTTGGAATAA
AGCCTGGAAAATCTTGCCGTTCATTTATTAATATAAAGCTACGATCTCTA
TTTTTAAAAGCTTCAAAAAGGTTAAAAGATTCCTTTCCCGAAATTTGTTA
CAATCATCTCTATTCATTTGGAAAATGAATTTCAAATCTTCTTTTCAGCA
ATTTCACCAAAGAAAAGTATGCAATCGAAATGCTTAAAAAGCAGCCACCA
AGGCCTGCTGTGAAAGGCGCAAGAGCCAAGTTTAAAAAGCAAAACAATGG
TTNAAAGCAGCCACCAAGGCCTGCTGTGAAAGGCGCAAGAGCCAAATTTA
AAAAGCAAAACAATGGTTCATTAGTGCCAAGTGGTGATAATGACAACAGC
GAAGGAGAGGAAGATGACCAGGGTGAAGAAGAGGAGAGCGAGGAAAGCGA
ACCTGAACCCGAACCTGAACCCAAACCTGAACCCAAACCTGAACCTGAAC
CAACTCCGCCTCCACCCGCCGCCCCTACCAAACAAACCACCTCATCTAGC
GTTATCTCGTCCAATAGAACATCGACCTTGAATAATGATGTAGATACATC
AAATAGTTTAACTAAGACTACTATTAAATCTCGTTTCGGTGACCGTGATC
GAGATGATAAGAAAGACACTAATACTTCAACCTCGGTGACTACTGCCAAA
ACAACGACAAGTTTCGGGAGTAGATACGGCAGGCGTGACCCTGAACCCGA
ACCTGTTACAACAACGAAATCAACGGTCGGTAGTCGATTTGGTACTACCA
CAACATCTTCACGAATCACCAGCTCTTTTGATAAGAAACCTGACGACAAC
ACCTCCTCGACTCGTCCCAGTCTTCAAAATCGACTCAATCCGAAGCGGGA
TGAAAAAGAGGAGAATGACACCAATTCAGTGTTGAATCGATACCGCTTGA
ACAAAAGCAAAACGAACGATGACAACAACTGGCGATCATCACGGAAGAAA
GAGGTATGTCGTCTTCTATTATGCCAGGGCTTGATTTTCTATCTTGTTTG
TTTATATGATATAGCTCTCTCCGTTTCCTAATTCGGTAAGGTGATACTTT
TGTTACTTTTCGTGCGCTTTAAGATAACCTTTAAGATTTAATCGCGTATG
TTATGTATGTTGTTTCTTTCTTCTCACAATTTTTTTCTTCGAGAAGAGGT
TTTTCAGATTCCCCTCACTTTTTCTGTTGTTTTGGTTCGGTGTTATCTCG
TCAATGAAAAGTTAGAAAGCTAAAAGGTTCATGTCTCTGAACAACTTGTC
TGATATGCGTTTGTGATTTGTTGTCTGTAACGTGAACGTTTTTTGACCAC
AGAAGGAAAGATCTATAAGAATCTATTCTTAACTCTTGAACAAGTGTGTT
ATTTTTGTAATGAAGGNAACAATTGATTTACGACCGAACAATAACCAAGA
CAATTATTCGACAAAATAAAGTTGAAAGGCGCGGTGAATTGTTCTTTTGT
TTTTGATGGAGGAGAGAATAATGATTGCAAGCAGGCTGTTTTTGTGTTGT
TGATGATGATGGAATGATAAACCGGTTTGTGTGTGTATACACAGAGAAAG
AAATATGGCTGATGTCTTCTTACTTAGGAAATAAATAATTCCCTAGCCTT
TTTTGTTGTTCTCTTGTTTTATATATGGAAAATTTTTACTTGCTTTGATT
ATTTTGCTGGGATTCTATTATTTATCAATGGTTTTTACATGTACATAAAA
TTCACCTACTACAACTACCAAAAAAAATGTTACAAAATAGATATAGACGA
CGCTATAGGGTATGTTGTTGATCTTTACAGGGGTTGGTTGGTAATTGAGC
TTTATTATTTTCTTGTGGTTGCAATCGTAGTGTCTTTTATTATCAAGGCT
GGATGATTGAAAATCTCTTTAGTTTGTTTTAATACTTTGATGTAGAGTTT
CGAACATTAAGTTTGTAAGCTGAATGTTAAAATTGTTCGAATTTTACCTT
ATAATCAATTTTGGTTTTAGCTTCGAGAAAGTTTTCATAACTAGTAAAGT
TTCAAGGATCTTTGGTTGTGCAGTATGGAATGCAATGGATTGATTTTAGT
CACAAATTGTTTAATATTACATCGTTTTTCATGATTTTTTGTTTGTTTCC
TCAGGACGAAGATAACCAAGAAACAGAGACACAGCCTTCGACGAGGCGAA
CGACACGAACTTACGATACTGGGGGTAGCACCACTGATACAACCTCCACA
CGAAGAACCAATCGTACATCCACTGATGACGATTCAAGCTCTCGCATGGT
AAGCAGTAACGTTTTTGTTGGGAAGATAATTGAGAGAAAGTAAAGTTAAG
CTATTTTTTCAGGTTCCTCGTTTTATTGAGTTCGAGTCTTTGAACAATCT
TTTAGAGAGAGATGAAATAATTTTCATGAAAGTGTTCAACGAAAGCATGC
ACTTGATCAAACCATTTCTCTTCCTCACGTTTAAAAGCAGGGAGTATCTC
TTTCTCCCTTTTCTTCAAAGGAATGTCAGGGATAAAGTTTCTGTTTTATT
TGCTTTGACGTTTGTTGAAAATATCTCAAATTTCTTGCTGCCATTTTGAT
TCCTGTTGTTTCTTCAACCGACTGTTTTCTCCTTGCTTCTTTACAGAGTA
TCGCCGAAAGGCTACATAAAAAGAATCAAGAACTGCTTGCAACAACTTCA
GATAATAACAATTCATCGGGCAGATCATGGCAACGCTCTTCAAACCCTTC
GACGACCTCTTCAACTGTAAGCATTTCCTAAATTCTTTTAGTACCAAAGG
GAATGTAGTTGTTATTTCTTAGCAATAACTTTTTTCACAAATGATCCCCC
TTTCTCTTTGATAAGAGGCAAACCTATTTTCTCTCTGATTATTAAAAGGA
GGACATACAGAGCGCAAGCATCATACAATATTATCATTATTCAGTAATCC
CTGCTGTGCAGTGGCAAAACTAATAGCTCCAGTTCAATTCCATAGGAGAC
TGAAGCTTTTACAATGTATGAGGTTTTTCAGATAGGATGATTGTGTCTTG
TTTTATACTTTCCAAATCTTTGGTCTAGTAGGAGTTTGAAACTTAATATT
TCTTAATTATCACTGATGATAGGCCTGACGGACATAATGACCAGTTCTTC
TCTTCACTTTCAGTCATCTTCGGACACGGGGGATACAAAAGATCTACAAC
GAAAACTCGACCAAGCTGTCAAAGAAGTAGAAGAATACAAATCCAAGTAT
GAAAAAATGAAAAAGGTAAGCATATTTTCTTTCATGTGAAATTCCATTAC
ACCATGTTTTTTTTAAATCAATCATTGATCAGTACATGTTTCTTTTTACA
AGAACATCCAAAATTTTTGAAGCCTTCGGATGTTCTTATTCTCACCATTT
GTGCTACAATTTCCTAAGAAATGGGGTGTTTTAGAGCCCACTAAGCCATC
GAAGCCTTATGATCTTATATTATTTGTTCTTATAAAAACGTGTGGTTTGG
CTATTTCATTGGCACTTCAATTTCTCATGAGTCAATTTTTTTGGACTTTT
AAATTATTTGTTTTTATTTGTTTTCAGGAAAAAGAAGAATTAGAAAAACA
ACTTAGTCAATATAAAGAAGATATCGATGTAAGTATTGATTGATTGATTG
ATTGATTGATTGATTGATTGATTGATTGATTGATTGATCATTGATTGATC
ATTGATTGATTGATTGATTTTGTAAGTTTTTGAGCAATCCAGAAATGTAT
GGGCCTAGAGTATTAGGGTTTACACTTGCCTTTTTTTCAAACGTTATCTT
GATGATTGCCTTCCCGAATCAATATAATTGGCAGCAACACTGCAATATGC
AATATTTCTTAACATGCATTGCTCTGTCTAAATCAATTTTTTGTTTTTAT
ATTTTGTAGAAAGTGCAAGATCTAAAGAGCGACAATATACGTCTGAAAGA
TGAGAATGGGGCGCTTATCAGAGTTATTAGTAAATTATCACGTACCCCTG
CTTCATCTTCTTCGTGAGTCGTGGATCGTCCGCTGCTTCCTTGTGAATTA
TTATATTATTATTATTGCTGAGGTGCTGCTGGTGCTACCGAGGAGAGATG
AGCCGCTGATTAAATTTTTTTAAATAAGAAAGAGAGAACTTTTTATACTA
CCTTTCATAGAACAGTTGTTTTAATAAATGAAGAAGAAGAAGGATATAAA
CAACAAAATACAACGTCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNATTGATTGATTGATTGATTTTGTAAGTTTTTGAGCA
ATCCAGAAATGTATGGGCCTAGAGTATTAGGGTTTACACTTGCCTTTTTT
TCAAACGTTATCTTGATGATTGCCTTCCCGAATCAATATAATTGGCAGCA
ACACTGCAATATGCAATATTTCTTAACATGCATTGCTCTGTCTAAATCAA
TTTTTTGTTTTTATATTTTGTAGAAAGTGCAAGATCTAAAGAGCGACAAT
ATACGTCTGAAAGATGAGAATGGGGCGCTTATCAGAGTTATTAGTAAATT
ATCACGTACCCCTGCTTCATCTTCTTCGTGAGTCGTGGATCGTCCGCTGC
TTCCTTGTGAATTATTATATTATTATTATTGCTGAGGTGCTGCTGGTGCT
ACCGAGGAGAGATGAGCCGCTGATTAAATTTTTTTAAATAAGAAAGAGAG
AACTTTTTATACTACCTTTCATAGAACAGTTGTTTTAATAAATGAAGAAG
AAGAAGGATATAAACAACAAAATACAACGTCCCAACAAATTCCAGTGAAT
ATTCACGCTCACCCTCGTTCGATGAATTGTGTCCGGGCTCACGATATTGG
ACATGATCGCAGTGCGTGTTTCCATAACAGTAATGAGATATCTGTGAAAC
ACGAATATACCGACTGACATGCTCTGTCGCTCAATGGTCAACGCAGTTAA
TGTTTTCTGAAATCTTTTTTTATGAATAAACTTATTGAAGAAGTGCAGGT
ATTTTGGTGGTGAAAAAGTGATATTAAGAAACAGCTTTTTGAAAAGGATT
GGATTCCTTAGAGATTGATTCTCTTTGATTATTTTATTTACAAAAAGAAA
AGACAAATTCTCCTTCTTTTTCGTACCTATGAATTCGATTGACTTCTGCA
CTGAAGCGTTTTGTTGTCTTTTTATGCTAGTGAGAAATGAGACGACTCAT
CAGACGAATTGATCATTATCATCATCATCAACATTTTCACACTTTTTCAT
CAAATTTGAGATTAGAATTCCACAGTAACGTTGTTTGTATTATCAAAAGA
TATTAATAATTATATTTTTCTATTAGTCCAACATGATTTGCTAAAAAAAA
TTTTTGAGTCCGTTTGTAGGTTGAAACGAAAAGAAGAAAAAAAGATTAAT
TTGACAACGTTAAAAAATTATTCGTTTGAAACATTCTTCTTCCTTTCTTT
CAAACGCGTCCCATGTCAAGTTTATAAGCATAAGACTTGTGAAAGCAAAT
TCAGGTTTAGATTTAAGTCCTGACCTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004461XLOC_004461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007875-exon-sc0000080-1575043694:177105..177128TCONS_00007875-exon-sc0000080-1575043694:177105..177128Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1575043694:176763..176830TCONS_00007875-exon-sc0000080-1575043694:176763..176830Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1575043694:176026..176696TCONS_00007875-exon-sc0000080-1575043694:176026..176696Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1575043694:174731..174874TCONS_00007875-exon-sc0000080-1575043694:174731..174874Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1575043694:174263..174382TCONS_00007875-exon-sc0000080-1575043694:174263..174382Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1575043694:173764..173865TCONS_00007875-exon-sc0000080-1575043694:173764..173865Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1575043694:173401..173451TCONS_00007875-exon-sc0000080-1575043694:173401..173451Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1575043694:170998..172055TCONS_00007875-exon-sc0000080-1575043694:170998..172055Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1510915933:177105..177128TCONS_00007875-exon-sc0000080-1510915933:177105..177128Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1510915933:176763..176830TCONS_00007875-exon-sc0000080-1510915933:176763..176830Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1510915933:176026..176696TCONS_00007875-exon-sc0000080-1510915933:176026..176696Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1510915933:174731..174874TCONS_00007875-exon-sc0000080-1510915933:174731..174874Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1510915933:174263..174382TCONS_00007875-exon-sc0000080-1510915933:174263..174382Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1510915933:173764..173865TCONS_00007875-exon-sc0000080-1510915933:173764..173865Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1510915933:173401..173451TCONS_00007875-exon-sc0000080-1510915933:173401..173451Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1510915933:170998..172055TCONS_00007875-exon-sc0000080-1510915933:170998..172055Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1491911889:177105..177128TCONS_00007875-exon-sc0000080-1491911889:177105..177128Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1491911889:176763..176830TCONS_00007875-exon-sc0000080-1491911889:176763..176830Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1491911889:176026..176696TCONS_00007875-exon-sc0000080-1491911889:176026..176696Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1491911889:174731..174874TCONS_00007875-exon-sc0000080-1491911889:174731..174874Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1491911889:174263..174382TCONS_00007875-exon-sc0000080-1491911889:174263..174382Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1491911889:173764..173865TCONS_00007875-exon-sc0000080-1491911889:173764..173865Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1491911889:173401..173451TCONS_00007875-exon-sc0000080-1491911889:173401..173451Clytia hemisphaericaexon
TCONS_00007875-exon-sc0000080-1491911889:170998..172055TCONS_00007875-exon-sc0000080-1491911889:170998..172055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:170998..177128 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.5549	47.5336	20.4796	17.3966	92.2709	85.173	105.924	116.505	55.834	73.4507	48.8894	36.6822	63.6027	56.7287	31.2099	36.3503	75.9691	65.8978	56.7364	53.5411	69.1259	74.7222	84.7779	77.5616	55.7604	49.4182	76.3355	62.136	92.8578	102.29
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top