TCONS_00007895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007895
Unique NameTCONS_00007895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007895 ID=TCONS_00007895|Name=TCONS_00007895|organism=Clytia hemisphaerica|type=transcript|length=2368bp
ATTGATCTATGTGGTGAAAATTGTCAAGAGATTAAATCCATGCCATGGAT
ATCATGATTGTCGCACAGAAAGGggatttaacatttaacatatATATTTT
TATGCTCAATAAGAGTATGTTTCTCTTGTTTCCCTCAGTTTCATTTTCGA
acgcaaaaatatcaaaaagaaaaaaatcaaaatggcggaaaAAGCGATGA
TTTATTTTGCTTTTAGTGTTTTGCTTTCCTTTCCAGCACCAAGCTCCCAG
atGGCTAAAAGTCTCTTCATGCCACTATCAAGTCTACAAGATTTGGGATT
CATTATCAAACCTCACAAAGATAATGTCTACAACGACATCCATAAAAGGA
TGGACATCAATTCGAACTCCAACATCGAAGTACCAATCGAGATAGCCAAA
CAGTTGGGACTTCTAAAACCTCCTGGAGCAGGAGGATGCCCACCGTGTCC
CAATCCTCCTTGTACTGGAGGTCCTGCAGGATGTGATGTCAAAGCTAAGT
CCATCTCAGAAGTGCAGATCAATGGTAAAGGTGATTACAGTGCACCAGTG
GGGCCAGTTTTCAGTGTTGGTGATGCTCCACCTCCGGGTATTGTGCATCC
AGAATTGTTAACACTGAATTTGAAAGGTAAAGATGGACGCATTGGAAAAC
CAGGACCCAAGGGACCACCAGGAGATGCTGGCCCACCAGGCTCACAAGGT
CCAATGGGTCCCAAAGGAGAACAAGGTGATGAATGTATTGCATCCAAGAT
GCCAAAAGATAAACAATGTTCACCAGACATCGTGAGCAACCTTCGTGCAA
GATTGGAGAAAGTGGAGAAATGTGCAACCaATACAACCTTGTTAGCAGCC
ATAACATTGAACGTATTGAGTACACTTGCAAATCAAAGACACGAAAAACC
TAAGTCCATTCTCGTCAAACAAAAACGCCCTCCACCTCCACCACCGCCCG
CTGCACCAGCCCCTCCTCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCA
CCCGCTAGTCCACCTTCACCTCCATCGCCACCCTCGGGACAGCCAGCACC
TGCTGCACCACCTTGTCCTGCAGGACCAGGGAAATGTGACGGAAATCAAG
GCAATGCCAATGTCCAATCAGATGTCAAGATCGACCTGACAGGAGGCGCT
GACAAACAACAACCAGCTTGTAAACGATCTGGCACATGCGCAACCGATCC
GTCTAAAACAGCCAATGCATTGCAAACACTACAACAGCTTCTAAACCAAG
CTAAagcacaacaacaacaaaatcctGTGGCCAAAGATTCTGCAACTGTC
TTGGTGAATGGTGTACCGGTTAAAATACCGCTCGGGAAATAAATTGAAAG
CAATGCAACTGTCATTCATTGGGCATCTTTCATTTGTGCTGTCTGTCTAT
CTAAGTAGTAAATACATTACAATAAATTTGTTAAATAAAAATAGCGTCTA
ATCgatataaaatttttattataattttgatatttctcaaTTCTTATGac
taatcagatggtttgagatgtttttgtttgttgaaCCTTTCTGTGAGCCC
TGAGTAAAACCAAGAAATGCAAGTAGCAAGAATTCCAGTGTAAAAAGCGT
GTAAGTACCCAACTTAAAAAATTGTGATTGAAAAAAGTGAGGTAAATTGT
TTTCGGATGTTTTGCTCAGCGTCATGAAAGGATTCtgcagaagaaaaaaa
tctcaaacaatCTTTTTTATGAGTTATTTGACCTATACACATCACATGTA
cataaatttcattttatttaaaaatactaaatagaaaatagaaaataatg
atttaaaaaatgcaaatcaaaaaagttttcgtAGCTTCGTTTATGTCCAA
AAAGTAAACCAATGTGGTAAAACATACAGCGGATACCTACCCTGTCCCAA
CAATATTTCAGCAGCTCAATTGTTCGTTTGTCCGTTCAACAAGCAAGGAG
CTGTCATAATTCATAATAACACCTTACTCTTTTGTCATGTAATCACAAAA
ATGAAGCAAGAAAGCAAACAACAACATACAGGTATGCCTGATAGTCCATA
CTTGAAACAGCTATCTAAGTGAGATACATTCTTCATTCCTCAtctttttc
atgctctttctcACAATGTTCCTTAGATGAGATGAAGGCTAAAGGCGCCA
TACCAATGATACAACCTATCACGATGCCAATCGCACGACCCTGAGTTGTG
AAAAAATCCAACAAacaattaaaggttttatttttacataagtgttcccg
tttcatatcaggcacatattttatatcaggacagtgtgttgccattgtta
tattatgctgatataagcaaaaaatgttgttttttcctctttctgatcaa
tcttgctccacatccgtg
Run BLAST on NCBI

transcript from alignment at sc0000080:239496..244710-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007895 ID=TCONS_00007895|Name=TCONS_00007895|organism=Clytia hemisphaerica|type=transcript|length=5215bp|location=Sequence derived from alignment at sc0000080:239496..244710- (Clytia hemisphaerica)
ATTGATCTATGTGGTGAAAATTGTCAAGAGATTAAATCCATGCCATGGAT
ATCATGATTGTCGCACAGAAAGGGGATTTAACATTTAACATATATATTTT
TATGCTCAATAAGAGTATGTTTCTCTTGTTTCCCTCAGTTTCATTTTCGA
ACGCAAAAATATCAAAAAGAAAAAAATCAAAATGGCGGAAAAAGCGATGA
TTTATTTTGCTTTTAGTGTTTTGCTTTCCTTTCCAGCACCAAGCTCCCAG
GTAAATATATTAATCAAATTAGTTAGAACCTCTAGAGTGTGTACCACGTC
TTTAGACTTTTGTCCATAGCTCATTGTTATAGATGGCACAACACATTATC
AATTGAAAACCTTTTGAAACAAACCACACAAGCCCAAACCAACTAATCTT
CCAAAACCATCCCATCAAATCAACTTTTTGATTTTTCAGATGGCTAAAAG
TCTCTTCATGCCACTATCAAGTCTACAAGATTTGGGATTCATTATCAAAC
CTCACAAAGATAATGTCTACAACGACATCCATAAAAGGATGGTAAGTTAT
TTATCCACAACTCCTTGGTAATCATAGATTGAACTTTTATCGATGTCATG
CTAGGATCTCCTTATCTAGAATGTAAAGATCTGAGATCAAACTGGCATAA
AACAAGCTAATATAAATAACACTGTTATTTTGGCATCGGATAGTGCAGAC
ACACTGTATATATTGTGAATGTTAATATACTGTAATCTCCACCAAATCTA
GACTTAGCTAGAGACATATCATACGAGCTGTATTCCTTATTGAAATTACA
GGACATCAATTCGAACTCCAACATCGAAGTACCAATCGAGATAGCCAAAC
AGTTGGGACTTCTAAAACCTCCTGGAGCAGGAGGATGCCCACCGTGTCCC
AATCCTCCTTGTACTGGAGGTCCTGCAGGATGTGATGTCAAAGCTAAGTC
CATCTCAGAAGTGCAGATCAATGGTAAAGGTGATTACAGTGCACCAGTGG
GGCCAGTTTTCAGTGTTGGTGATGCTCCACCTCCGGGTATTGTGCATCCA
GTAAGTTCTTTTGTTCTTAATCATCGTGAAAAAGTTAAAAAGCCATACAA
TGTTGGAAAATAATATCCGAGGAAATTAATCTACTCAGATCTTTGAAATG
AAGAAAATCAAGATGTAAAATGAAAAAAAAAATAAGAATAGGGTCAATAT
ACTTTTTTTCATACTACACTTTAGGAATTGTTAACACTGAATTTGAAAGG
TAAAGATGGACGCATTGGAAAACCAGGACCCAAGGGACCACCAGGAGATG
CTGGNCAAGTCTACAAGATTTGGGATTCATTATCAAACCTCACAAAGATA
ATGTCTACAACGACATCCATAAAAGGATGGTAAGTTATTTATCCACAACT
CCTTGGTAATCATAGATTGAACTTTTATCGATGTCATGCTAGGATCTCCT
TATCTAGAATGTAAAGATCTGAGATCAAACTGGCATAAAACAAGCTAATA
TAAATAACACTGTTATTTTGGCATCGGATAGTGCAGACACACTGTATATA
TTGTGAATGTTAATATACTGTAATCTCCACCAAATCTAGACTTAGCTAGA
GACATATCATACGAGCTGTATTCCTTATTGAAATTACAGGACATCAATTC
GAACTCCAACATCGAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTC
TAAAACCTCCTGGAGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGT
ACTGGAGGTCCTGCAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGT
GCAGATCAATGGTAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCA
GTGTTGGTGATGCTCCACCTCCGGGTATTGTGCATCCAGTAAGTTCTTTT
GTTCTTAATCATCGTGAAAAAGTTAAAAAGCCATACAATGTTGGAAAATA
ATATCCGAGGAAATTAATCTACTCAGATCTTTGAAATGAAGAAAATCAAG
ATGTAAAATGAAAAAAAAAATAAGAATAGGGTCAATATACTTTTTTTCAT
ACTACACTTTAGGAATTGTTAACACTGAATTTGAAAGGTAAAGATGGACG
CATTGGAAAACCAGGACCCAAGGGACCACCAGGAGATGCTGGCCCACCAG
GCTCACAAGGTCCAATGGGTCCCAAAGGAGAACAAGGTGATGAATGTATT
GCATCCAAGATGCCAAAAGATGTGAGTTATATTTAGTGCATTCAATAAAT
TCCAATATTAAATTAGGCTTGCAATTAAGGCGATGCTATTCTGTAATGAA
TGTCATACTTGACATTGAAATCAATAAGAAGCTCAAAGGAAAGCACTGAT
ATATACTAAAACATTTCCTTGCAGAAACAATGTTCACCAGACATCGTGAG
CAACCTTCGTGCAAGATTGGAGAAAGTGGAGAAATGTGCAACCGTAAGTA
TTCATCAAGATATGTCTTCTCCTCAAATATGGTCAGTCAAGAACCTTTTA
TAAAATATCCCCATTTAATCATCAAAATTCATTGAATTAAATATAACTTT
ACTGCAATCGACAAGTATTTTAACTCATACCCATATGTAATAATCACGAC
ATTGAAGACATCATATAAAATTCAATTTAATCATTTTTAGAATACAACCT
TGTTAGCAGCCATAACATTGAACGTATTGAGTACACTTGCAAATCAAAGA
CACGAAAAACCTAAGTCCATTCTCGTCAAACAAAAACGCCCTCCACCTCC
ACCACCGCCCGCTGCACCAGCCCCTCCTCCGCCTCCTGCTCAACCTGCCG
CTCCACCAGCACCCGCTAGTCCACCTTCACCTCCATCGCCACCCTCGGGA
CAGCCAGCACCTGCTGCACCACCTTGTCCTGCAGGACCAGGGAAATGTGA
CGGAAACCAAGGCAGTAAGTATTAAATCAAGAAATATTTGTAGAAATCAA
AACATAAAATTATTTCACTGTGAGTCAAAAGGTAACCTTGTCTCCATAAA
GTCTAGTCTTAAATAATAAAGCTGTTGAAATGAATGAAGGAATAAATCCT
ACTACGAACCTCAGTTATATCAACTCTCTTGAAAATGTATATCATATATT
CTTTAGATGCCAATGTCCAATCAGATGTCAAGATCGACCTGACAGGAGGC
GCTGACAAACAACAACCAGCTTGTAAACGATCTGGCACGTGCGCAACCGA
TCCGTCTAAAACAGCCAATGCATTGCAAACACTACAACAGCTTCTAAACC
AAGCTAAAGCACAACAACAACAAAATCCTGTGGCCAAAGATTCTGCAACT
GTCTTGGTGAATGGTGTACCGGTTAAAATACCGCTCGGGAAATAAATTGA
AAGCAATGCAACTGTCATTCATTGGGCATCTTTCATTTGTGCTATCTGTC
TATCTAAGTAGTAAATACATTACAATAAATTTGTTAAATAAAAATAGCGT
CTAATCGATATAAAATTTTTATTATAATTTTGATATTTCTCAATTCTTAT
GAATAATCAGATGGTTTGAGATGTTTTTGTTTGTTGAACCTTTCTGTGAG
CCCTGAGTAAAACCAAGAAATGCAAGTAGCAAGAATTCCAGTGTAAAAAG
CGTGTAAGTACCCAACTTAAAAAATTGTGATTGAAAAAAGTGAGGTAAAT
TGTTTTCGGATGTTTTGCTCAGCGTCATGAAAGGATTCTGCAGAAGAAAA
AANACTGCTGCACCACCTTGTCCTGCAGGACCAGGGAAATGTGACGGAAA
TCAAGGCAGTAAGTATTAAATCAGGAAATATTTGTAGAAATCAAAACATA
AAATTATTTCACTGTGAGTCAAAAGGTAACCTTTTCTCCATAAAGTCTAG
TCTTAAATAAGAAAGCTATTGAAATGAATGAAGGAATAAATCCTACTACG
GACCTCAGTTATATCAACTCTCTTGAAAATGTATATCATATATTCTTTAG
ATGCCAATGTCCAATCAGATGTCAAGATCGACCTGACAGGAGGCGCTGAC
AAACAACAACCAGCTTGTAAACGATCTGGCACATGCGCAACCGATCCGTC
TAAAACAGCCAATGCATTGCAAACACTACAACAGCTTCTAAACCAAGCTA
AAGCACAACAACAACAAAATCCTGTGGCCAAAGATTCTGCAACTGTCTTG
GTGAATGGTGTACCGGTTAAAATACCGCTCGGGAAATAAATTGAAAGCAA
TGCAACTGTCATTCATTGGGCATCTTTCATTTGTGCTGTCTGTCTATCTA
AGTAGTAAATACATTACAATAAATTTGTTAAATAAAAATAGCGTCTAATC
GATATAAAATTTTTATTATAATTTTGATATTTCTCAATTCTTATGACTAA
TCAGATGGTTTGAGATGTTTTTGTTTGTTGAACCTTTCTGTGAGCCCTGA
GTAAAACCAAGAAATGCAAGTAGCAAGAATTCCAGTGTAAAAAGCGTGTA
AGTACCCAACTTAAAAAATTGTGATTGAAAAAAGTGAGGTAAATTGTTTT
CGGATGTTTTGCTCAGCGTCATGAAAGGATTCTGCAGAAGAAAAAAATCT
CAAACAATCTTTTTTATGAGTTATTTGACCTATACACATCACATGTACAT
AAATTTCATTTTATTTAAAAATACTAAATAGAAAATAGAAAATAATGATT
TAAAAAATGCAAATCAAAAAAGTTTTCGTAGCTTCGTTTATGTCCAAAAA
GTAAACCAATGTGGTAAAACATACAGCGGATACCTACCCTGTCCCAACAA
TATTTCAGCAGCTCAATTGTTCGTTTGTCCGTTCAACAAGCAAGGAGCTG
TCATAATTCATAATAACACCTTACTCTTTTGTCATGTAATCACAAAAATG
AAGCAAGAAAGCAAACAACAACATACAGGTATGCCTGATAGTCCATACTT
GAAACAGCTATCTAAGTGAGATACATTCTTCATTCCTCATCTTTTTCATG
CTCTTTCTCACAATGTTCCTTAGATGAGATGAAGGCTAAAGGCGCCATAC
CAATGATACAACCTATCACGATGCCAATCGCACGACCCTGAGTTGTGAAA
AAATCCAACAAACAATTAAAGGTTTTATTTTTACATAAGTGTTCCCGTTT
CATATCAGGCACATATTTTATATCAGGACAGTGTGTTGCCATTGTTATAT
TATGCTGATATAAGCAAAAAATGTTGTTTTTTCCTCTTTCTGATCAATCT
TGCTCCACATCCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004463XLOC_004463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007895-exon-sc0000080-1575043694:244461..244710TCONS_00007895-exon-sc0000080-1575043694:244461..244710Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1575043694:244170..244271TCONS_00007895-exon-sc0000080-1575043694:244170..244271Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1575043694:242823..243071TCONS_00007895-exon-sc0000080-1575043694:242823..243071Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1575043694:242490..242648TCONS_00007895-exon-sc0000080-1575043694:242490..242648Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1575043694:242268..242336TCONS_00007895-exon-sc0000080-1575043694:242268..242336Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1575043694:241815..242070TCONS_00007895-exon-sc0000080-1575043694:241815..242070Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1575043694:240953..240970TCONS_00007895-exon-sc0000080-1575043694:240953..240970Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1575043694:239496..240760TCONS_00007895-exon-sc0000080-1575043694:239496..240760Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1510915933:244461..244710TCONS_00007895-exon-sc0000080-1510915933:244461..244710Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1510915933:244170..244271TCONS_00007895-exon-sc0000080-1510915933:244170..244271Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1510915933:242823..243071TCONS_00007895-exon-sc0000080-1510915933:242823..243071Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1510915933:242490..242648TCONS_00007895-exon-sc0000080-1510915933:242490..242648Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1510915933:242268..242336TCONS_00007895-exon-sc0000080-1510915933:242268..242336Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1510915933:241815..242070TCONS_00007895-exon-sc0000080-1510915933:241815..242070Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1510915933:240953..240970TCONS_00007895-exon-sc0000080-1510915933:240953..240970Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1510915933:239496..240760TCONS_00007895-exon-sc0000080-1510915933:239496..240760Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1491911889:244461..244710TCONS_00007895-exon-sc0000080-1491911889:244461..244710Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1491911889:244170..244271TCONS_00007895-exon-sc0000080-1491911889:244170..244271Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1491911889:242823..243071TCONS_00007895-exon-sc0000080-1491911889:242823..243071Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1491911889:242490..242648TCONS_00007895-exon-sc0000080-1491911889:242490..242648Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1491911889:242268..242336TCONS_00007895-exon-sc0000080-1491911889:242268..242336Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1491911889:241815..242070TCONS_00007895-exon-sc0000080-1491911889:241815..242070Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1491911889:240953..240970TCONS_00007895-exon-sc0000080-1491911889:240953..240970Clytia hemisphaericaexon
TCONS_00007895-exon-sc0000080-1491911889:239496..240760TCONS_00007895-exon-sc0000080-1491911889:239496..240760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:239496..244710 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.6951	2.56857	0.642312	0.234416	2.50278	1.65008	3.50977	3.89418	2.90613	8.80119	5.12751	7.14309	4.76557	2.51012	2.67735	3.59443	1.50872	1.39376	0.346027	0.00315764	2.09336e-08	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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