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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007902 ID=TCONS_00007902|Name=TCONS_00007902|organism=Clytia hemisphaerica|type=transcript|length=2511bp AAAAAGATATAGCTTTTGtcgatagaaatatttttgatccttAGGAAAAA AAGTCCTATGGTCGAGTTTTAAGTATGAAATGCTTTTATTGTAAAGAGGA CAATAGGTGACTGATTTTCAAGGCAAGAACAAAGCAATCATTAACAAAAA ACATGAGTAATTCTGTGGTTAGATTTTTCCGATCCACCTAAAAGCTTTCA CTACTCGCATTTTTTTTAGAGGAGGTAGGGAGTGCGTTAGCTAGGATTGA CATCCATCCATCCTCAGATTGCATCGAACTAGCtatttcttttacaaaaa tgatGTCCATTAAACTGGTGGCATTATGTGCGCTCTTGCCGGCTATTTTC ACCATACCTGGAATCTCGATCAATGATATGTTTGCTTATGGACCTAACAA TGGAGACACTGGGAATTCATATCATGGTATAGATGCGGCTGCTTTTTTGG ATGGGTTTGAAACAGTCGATGTACCAAACAACTTACCCAGTGTCAGATGG GGTGGTAAAGATTTAGGCAGAAGAGCATTTATTAACTTTAACGGACATAT CACATTTGGAAACAACCATAGAAACCAGGACCCTGCAACCATTCAAAATT TGGATGCCAGTATCACCGCTATTTTTTACCCTTTCTATTCTGATAACGAT ATTCGACGACCCGATGGTATGCTATATTTTCGATTGTCTACACAAGCAAG TGATTTGAGCCTAGCTAACACACTTATCCGTGGACGAAATTTTGTTGGTT TCACAACAAGATACTGTATCATTGCCACATGGCATAAAAACAAGTACTAC ATTGGTACAGGTGATAAAGCAGATCCCAACCGTCAACAAGAAAACACATA TCAAGCTGCCTTGTGTGTTGGCGATTCTGACAGTCACATTATCTACCATT ATAATGAAATGAATTGGGACAAATCTGAAGATCCAGATTCATCTGATTCA AGAATTGGATGGCTCGTTAAAGGAGTCACAGACTCTTCCTTGGCTTCTTG GGTATCACCATACTCAGGACAAACAGATGCTTACGCCAGTCAAGCTACTC AATCAAATGTTGGTGTAGCCGGGCGATGGATGAGATCTACTGTAGCTGTT GGACCATGTGTGAACCTTGCTGATGGATTATATCAAGTGAGTTGCCAACA ATATCGTGAATGTTGTGGAAAAGCAGAACAAGCTGTCAGAACCTGTCCAG TAGGAACAAATTTCCACCCAACACTTAAACGTTGCATcgacacaaaaaat tacaattgcGGCGGAGCAGCAAATCTTTGCGATTCTTTCGCGTCGAACGG AAATTTTGCCGACACGTCAACTACTGCTCTAGATGACTACATTCGATGCA AAAATGGTATTGGCCATAAATTGAAATGTCCTTTTGGTATTGTTTTTGGA TCATCTGCTATTTGCAATTAGAGAGATAAGCAGCACAGGTATCAAAATCG AGGAAAATCTTTGAAGAAAGAGCATACATAAAGGAATGAAACGACCAATT TATGAGATGAGTTATATACAATGTAATATATAATCAATCAGTTTGTAAAG AATCAGTATGCGGATAAAAtgtttccaaaattaaaattttgtttttatat agaaatgaatgttttattttttaaatgaataaaTAGTTAAATACCGTTGA GAAGAGTACTAGGAATAAGCTCATCGGCGAAACACCCAGAAATTCGAATC CATCTTTTGAAGTCAGAAACCGTTTGACAAACTTTCACTTTAAGTAGTTC AATCAGACATCCTATACTGTGAATACCTTTGAAAGTAGAAGTACCATTTC AGTATTAATCATATATAATTGTCTTTATAATGCACCCCTAATATTTTTTA CTATCATTTTATTTATATAccttttgtttttgtgttaTCTTGAAtagcat tttctttttcttttattctatTGAAGCTTCTTCTTTTTGTCGTTGTTGTT GGTATTTACCTTCTAATTTAATCCTTTTTACTGCTTGCTTCTCAAGGTGT CTCTCCAGGCCTCctaagtttcgaaaaaaaaattaaaatcaggATAGAAA TCCAAACAATAGACGGGTTTCAATGTGGGCGGGTGATTGGGTTGGATTAT TGGAGGCAAAATGACTTACGATTTATAAAGAGGCGAGTGAATATCAATCA AATCAGTCATATCTCTTCGAAATTTATGAATGGTAAGCCTATATACCTCT GAGAAAACAtgctaaaatttcttttcaaaagtccTACCAGAGATatagtc aaaacaaaaaatctgctTGTCTCCAGCTAATGTAATGGTCTTTTTGCCTC CAAAAAATCGGGCGGTAAGTCACGTGAGTAAACAAATGACGTATCACGAA AGCCGCCTATACAATCAGAATTAAACAAAATTCTAAGACATCCCTGTCCA TCATCATtgttcgagagctttcgaatgtaTTTCAGTATTTTcttttagct taaaaaaacTCTGCTTAAGAACTAGCAAAATAGGCCTTATGAGGTGTCGT ATTTGACACAA Run BLAST on NCBI protein sequence of TCONS_00007902-protein >TCONS_00007902-protein ID=TCONS_00007902-protein|Name=TCONS_00007902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MMSIKLVALCALLPAIFTIPGISINDMFAYGPNNGDTGNSYHGIDAAAFL DGFETVDVPNNLPSVRWGGKDLGRRAFINFNGHITFGNNHRNQDPATIQN LDASITAIFYPFYSDNDIRRPDGMLYFRLSTQASDLSLANTLIRGRNFVG FTTRYCIIATWHKNKYYIGTGDKADPNRQQENTYQAALCVGDSDSHIIYH YNEMNWDKSEDPDSSDSRIGWLVKGVTDSSLASWVSPYSGQTDAYASQAT QSNVGVAGRWMRSTVAVGPCVNLADGLYQVSCQQYRECCGKAEQAVRTCP VGTNFHPTLKRCIDTKNYNCGGAANLCDSFASNGNFADTSTTALDDYIRC KNGIGHKLKCPFGIVFGSSAICN Run BLAST on NCBI transcript from alignment at sc0000080:330819..335518- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007902 ID=TCONS_00007902|Name=TCONS_00007902|organism=Clytia hemisphaerica|type=transcript|length=4700bp|location=Sequence derived from alignment at sc0000080:330819..335518- (Clytia hemisphaerica) AAAAAGATATAGCTTTTGTCGATAGAAATATTTTTGATCCTTAGGAAAAA
AAGTCCTATGGTCGAGTTTTAAGTATGAAATGCTTTTATTGTAAAGAGGA
CAATAGGTGACTGATTTTCAAGGCAAGAACAAAGCAATCATTAACAAAAA
ACATGAGTAATTCTGTGGTTAGATTTTTCCGATCCACCTAAAAGCTTTCA
CTACTCGCATTTTTTTTAGAGGAGGTAGGGAGTGCGTTAGCTAGGATTGA
CATCCATCCATCCTCAGATTGCATCGAACTAGCTATTTCTTTTACAAAAA
TGATGTCCATTAAACTGGTGGCATTATGTGCGCTCTTGCCGGCTATTTTC
ACCATACCTGGAATCTCGATCAATGATATGTTTGCTTATGGACCTAACAA
TGGAGACACTGGGAATTCATATCATGGTATAGATGCGGCTGCTTTTTTGG
ATGGGTTTGAAACAGTCGATGTACCAAACAACTTACCCAGTGTCAGATGG
GGTGGTAAAGATTTAGGCAGAAGAGCATTTGTAAGCATTTTATTTTCACA
TTCTTTCGTTGCACTATAATCTTTAGTAAGCAATAAATCATCTTTTTTTA
TATTGAGCGGTCATTTGAGAGTGCTGTATAGAGCGAATTCGTAAAATCTA
TTTGTAAATTTCAACGTTGAAAAATGATACATTTTAATTCAAGTTTCATG
CCTTACACAAATCATTATAGCACTCTTAGAGTCTGGTCTTAGTAAATCAA
ACATTTCCGCCTGAACAAGCTTTTCAACTACGTAATATTTTGATTTTTTG
AAGCATCATCGGAGGGTGATAATCTAAACGCTTACTTTTACATTCCATCT
TCTGTGGTGGCTTCGATGAGAAGTTAAGACCCCATTTTAGGGCGTTAAAA
GGTGTCATAAAACTGAAAGATTTCATAAATAGCTTTTTCAAAGTTTTAAT
TCCATCGATCTGAATATGACGACGTTTTTCTCATTTCATTGCATAAATTC
CTCGCAAATAGAGAGCCCCTTATAGTGCATTTTAACGATTATCCTCTTTT
TGAGGTTGCTCTTTATTTTTTGGCACGTCGAGCCTCGAATGTTTGTCAAC
AAGTTTTTTATTAGGGAAATTTCACCCTTCGTGCGCTCTAAGTTCAAGTA
TTTCACGCTTGGTGTTATGTTCTTATTTTTTATGTTGAGCTTTATTGTTC
TTAAAGCACAAAAAAAACAAAAAAAACGACAAAACAACGACCATGATATA
TTATCAACTTTCGTTTAATGGTTTTAGATTAACTTTAACGGACATATCAC
ATTTGGAAACAACCATAGAAACCAGGACCCTGCAACCATTCAAAATTTGG
ATGCCAGTATCACCGCTATTTTTTACCCTTTCTATTCTGATAACGATATT
CGACGACCCGATGGTATGCTATATTTTCGATTGTCTACACAAGCAAGTGA
TTTGAGCCTAGCTAACACACTTATCCGTGGACGAAATTTTGTTGGTTTCA
CAACAAGATACTGTATCATTGCCACATGGCATAAAAACAAGTACTACATT
GGTACAGGTGATAAAGCAGATCCCAACCGTCAACAAGAAAACACATATCA
AGCTGCCTTGTGTGTTGGCGATTCTGACAGTCACATTATCTACCATTATA
ATGAAATGAATTGGGACAAATCTGAAGATCCAGATTCATCTGATTCAAGA
GTAAGAAATTTTTCGAATCTTCTTTCAATGAACACCATAAAGATTAGGCG
TGTCAAACACTTTTTCTCTCTGCCCAGCGTCTAAGTTTTATCCAATTTAT
CTAACTACCCTTTCAAAACTTTTTGACCTCTTTCTAGATTGGATGGCTCG
TTAAAGGAGTCACAGACTCTTCCTTGGCTTCTTGGGTATCACCATACTCA
GGACAAACAGATGCTTACGCCAGTCAAGCTACTCAATCAAATGTTGGTGT
AGCCGGGCGATGGATGAGATCTACTGTAGCTGGTAGGTTAGTTCTCTGGA
AAAGGGAAATAAGCAAAAAGAGATTCCTTCTCTTGGGGATTAAGATTTTC
AATATGCTTTTTCATCTGTTTTCGTGGATTTTTGGCAGTACAATTTAATA
CGTTTAGGCATGAACCCGCATTTTTGACAAAAAGTTTTTAAGGTCCTCTT
TTCTTGAGTAAAGATATCGGGGCCTGGAATTCAAGTATTTTTACCCGAGT
TATTTTTTCAGCGTTATTTTGCATATGACGTCATAATTTCAGTTTTTATG
ACGTCACCACAAAAATGATAACTCGAGTTTTGTTTTGAGCTTTTTTCGAT
TTATTTGGTGTTTTAAGCTCGGTTTTTTTCGTGCCCTTAACTTTCCGAGT
TATCTGATAAATTTAACTCGGGTTTCTTTTCGTGCCAAATCTGCCCCTTC
AGGTAACAAACCCATATAAACAAGTAGAATCGTTCATGAATCAATTAATA
TCAACTATAAAAATACAATGTAAATTACTCGAAAACTTTGAGCACGAAAA
AAACCCGAGTGAAAATTTATCAAATAACTCGAAAAGTTAAAAGCTAAAAA
AAAAAAAAAACTCGAGTTATAATCTTTATGATGATGTCATAATGACGTCA
CAAAACTGAAATTATGACGTCACATTCAAAATAACTCGGGAATTCCAGGC
CCCAAATTTATCGCGACCTACAGTAAAATCTCGCAACTCAGGAATCGTAA
TGAGGTTAGTGAGAGTGTGATGATGAAAAGGGAGCTAAGATTTTTAATTT
TGGCAAAAATGGTAAAAAAGAAATTGTTCAAACATTTATTACGTTTTTAG
TTGGACCATGTGTGAACCTTGCTGATGGATTATATCAAGTGAGTTGCCAA
CAATATCGTGAATGTTGTGGAAAAGCAGAACAAGCTGTCAGAACCTGTCC
AGTAGGAACAAATTTCCACCCAACACTTAAACGTTGCATCGACACAAAAA
ATTACAATTGCGGCGGAGCAGGTAAGTGCCTTTCAGATTTCTTTCATGAG
GGCTAGAGATGGAAACAGAGCTCAAGATAAAGAAATACGATTTTTAAAGT
TAAAACAATGCTGAAACAATGCGACGTTTCAATGCTTTTTATAAATCTTT
AAACAAAGCTCTTTTACGTCTGAGGATGCAAAGCAGACAATTTAGCTGTC
TAAGTTAAAGCTTATGGACAAAGATAACGAAGGTTGATGAACCGTATGGC
TCAACTTATCAAGCTCTAAGGTTAAGCATATAAAAGTAATGTTTGGATAT
AGAGAACCCTTTTCCACTTAGTGGATCAAGACCTCATTTAACATGGTCTA
AGAAAAATGAATCTTTCCTATTCATTTCTGACTGTTGAAGCGACGACTCA
TCAACTCCTTAATCAAATCTTCTAACACGATTAAAGGTTGTCTCTGCTGA
TGAAAAGTTTGTTTAGAAGATCGCACTTTCAAATGATATTAACATTTCTT
TCTACTAGCAAATCTTTGCGATTCTTTCGCGTCGAACGGAAATTTTGCCG
ACACGTCAACTACTGCTCTAGATGACTACATTCGATGCAAAAATGGTATT
GGCCATAAATTGAAATGTCCTTTTGGTATTGTTTTTGGATCATCTGCTAT
TTGCAATTAGAGAGATAAGCAGCACAGGTATCAAAATCGAGGAAAATCTT
TGAAGAAAGAGCATACATAAAGGAATGAAACGACCAATTTATGAGATGAG
TTATATACAATGTAATATATAATCAATCAGTTTGTAAAGAATCAGTATGC
GGATAAAATGTTTCCAAAATTAAAATTTTGTTTTTATATAGAAATGAATG
TTTTATTTTTTAAATGAATAAATAGTTAAATACCGTTGAGAAGAGTACTA
GGAATAAGCTCATCGGCGAAACACCCAGAAATTCGAATCCATCTTTTGAA
GTCAGAAACCGTTTGACAAACTTTCACTTTAAGTAGTTCAATCAGACATC
CTATACTGTGAATACCTTTGAAAGTAGAAGTACCATTTCAGTATTAATCA
TATATAATTGTCTTTATAATGCACCCCTAATATTTTTTACTATCATTTTA
TTTATATACCTTTTGTTTTTGTGTTATCTTGAATAGCATTTTCTTTTTCT
TTTATTCTATTGAAGCTTCTTCTTTTTGTCGTTGTTGTTGGTATTTACCT
TCTAATTTAATCCTTTTTACTGCTTGCTTCTCAAGGTGTCTCTCCAGGCC
TCCTAAGTTTCGAAAAAAAAATTAAAATCAGGATAGAAATCCAAACAATA
GACGGGTTTCAATGTGGGCGGGTGATTGGGTTGGATTATTGGAGGCAAAA
TGACTTACGATTTATAAAGAGGCGAGTGAATATCAATCAAATCAGTCATA
TCTCTTCGAAATTTATGAATGGTAAGCCTATATACCTCTGAGAAAACATG
CTAAAATTTCTTTTCAAAAGTCCTACCAGAGATATAGTCAAAACAAAAAA
TCTGCTTGTCTCCAGCTAATGTAATGGTCTTTTTGCCTCCAAAAAATCGG
GCGGTAAGTCACGTGAGTAAACAAATGACGTATCACGAAAGCCGCCTATA
CAATCAGAATTAAACAAAATTCTAAGACATCCCTGTCCATCATCATTGTT
CGAGAGCTTTCGAATGTATTTCAGTATTTTCTTTTAGCTTAAAAAAACTC
TGCTTAAGAACTAGCAAAATAGGCCTTATGAGGTGTCGTATTTGACACAA
Coding sequence (CDS) from alignment at sc0000080:330819..335518- >TCONS_00007902 ID=TCONS_00007902|Name=TCONS_00007902|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000080:330819..335518- (Clytia hemisphaerica) ATGATGTCCATTAAACTGGTGGCATTATGTGCGCTCTTGCCGGCTATTTT CACCATACCTGGAATCTCGATCAATGATATGTTTGCTTATGGACCTAACA ATGGAGACACTGGGAATTCATATCATGGTATAGATGCGGCTGCTTTTTTG GATGGGTTTGAAACAGTCGATGTACCAAACAACTTACCCAGTGTCAGATG GGGTGGTAAAGATTTAGGCAGAAGAGCATTTATTAACTTTAACGGACATA TCACATTTGGAAACAACCATAGAAACCAGGACCCTGCAACCATTCAAAAT TTGGATGCCAGTATCACCGCTATTTTTTACCCTTTCTATTCTGATAACGA TATTCGACGACCCGATGGTATGCTATATTTTCGATTGTCTACACAAGCAA GTGATTTGAGCCTAGCTAACACACTTATCCGTGGACGAAATTTTGTTGGT TTCACAACAAGATACTGTATCATTGCCACATGGCATAAAAACAAGTACTA CATTGGTACAGGTGATAAAGCAGATCCCAACCGTCAACAAGAAAACACAT ATCAAGCTGCCTTGTGTGTTGGCGATTCTGACAGTCACATTATCTACCAT TATAATGAAATGAATTGGGACAAATCTGAAGATCCAGATTCATCTGATTC AAGAATTGGATGGCTCGTTAAAGGAGTCACAGACTCTTCCTTGGCTTCTT GGGTATCACCATACTCAGGACAAACAGATGCTTACGCCAGTCAAGCTACT CAATCAAATGTTGGTGTAGCCGGGCGATGGATGAGATCTACTGTAGCTGT TGGACCATGTGTGAACCTTGCTGATGGATTATATCAAGTGAGTTGCCAAC AATATCGTGAATGTTGTGGAAAAGCAGAACAAGCTGTCAGAACCTGTCCA GTAGGAACAAATTTCCACCCAACACTTAAACGTTGCATCGACACAAAAAA TTACAATTGCGGCGGAGCAGCAAATCTTTGCGATTCTTTCGCGTCGAACG GAAATTTTGCCGACACGTCAACTACTGCTCTAGATGACTACATTCGATGC AAAAATGGTATTGGCCATAAATTGAAATGTCCTTTTGGTATTGTTTTTGG ATCATCTGCTATTTGCAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007902-exon-sc0000080-1575043694:334989..335518 | TCONS_00007902-exon-sc0000080-1575043694:334989..335518 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1575043694:333819..334241 | TCONS_00007902-exon-sc0000080-1575043694:333819..334241 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1575043694:333537..333681 | TCONS_00007902-exon-sc0000080-1575043694:333537..333681 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1575043694:332548..332718 | TCONS_00007902-exon-sc0000080-1575043694:332548..332718 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1575043694:330819..332060 | TCONS_00007902-exon-sc0000080-1575043694:330819..332060 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1510915933:334989..335518 | TCONS_00007902-exon-sc0000080-1510915933:334989..335518 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1510915933:333819..334241 | TCONS_00007902-exon-sc0000080-1510915933:333819..334241 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1510915933:333537..333681 | TCONS_00007902-exon-sc0000080-1510915933:333537..333681 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1510915933:332548..332718 | TCONS_00007902-exon-sc0000080-1510915933:332548..332718 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1510915933:330819..332060 | TCONS_00007902-exon-sc0000080-1510915933:330819..332060 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1491911889:334989..335518 | TCONS_00007902-exon-sc0000080-1491911889:334989..335518 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1491911889:333819..334241 | TCONS_00007902-exon-sc0000080-1491911889:333819..334241 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1491911889:333537..333681 | TCONS_00007902-exon-sc0000080-1491911889:333537..333681 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1491911889:332548..332718 | TCONS_00007902-exon-sc0000080-1491911889:332548..332718 | Clytia hemisphaerica | exon |
TCONS_00007902-exon-sc0000080-1491911889:330819..332060 | TCONS_00007902-exon-sc0000080-1491911889:330819..332060 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000080 | supercontig | sc0000080:330819..335518 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007160 | cell-matrix adhesion |
GO:0006030 | chitin metabolic process |
Vocabulary: Cellular Component
Term | Definition |
GO:0005576 | extracellular region |
Vocabulary: Molecular Function
Term | Definition |
GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007160 |
cell-matrix adhesion |
biological_process |
GO:0006030 |
chitin metabolic process |
cellular_component |
GO:0005576 |
extracellular region |
molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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