TCONS_00007918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007918
Unique NameTCONS_00007918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007918 ID=TCONS_00007918|Name=TCONS_00007918|organism=Clytia hemisphaerica|type=transcript|length=1363bp
ACGATTTCCATGGTAAATTATGAAACATTATAAATGCGAGGGAGTTGTCT
AAGAATTTAGTGGAAATACTGGAATAATTCTGTTTATTGACTAGCGCTTC
TGAGGCTTGTATACAGTAGATGACAGGGCCGGTCGTTAATATTGCTAGCT
ACTATTTCAAAGGCAATAAGATGAACTCTATTTTCTTACATGAAATGTCA
GAATATTTTGACCACATGCTTCCAGGAAATGTATGTTTTTGGAATTGATA
TTTAGGAAAGTAGAAATAACCACCAACAACAAAGCAGCAATACTACCGAC
TCATCGACAAACAATACTTCCACAACCTCCTCAGCCAATAACAACAAAGC
AACCATGAAGATGAAAGAGCAGAaagattttgataatattcacATTGCAT
TGGCTGGTGCAAAGAATTGTGGGAAATCAgCACTGGCGGTTCGTTATTTG
ACCAAACGTTTCATTGGAGAGTACGATTCACACAAAGATGACATATGGCA
TCGAAGTATGACAGTTGCTGACAGAGAAGTTCGTGTATCACTCAAAGATA
CCACTGGAACGAGCTGGCTAAAAACACCCGCACCTTTAATCAGTTGGACC
ACAGCAATCGTAGTTGTTTACTCCATCACAGATCGAAACAGTTTCGCATT
GGCACGACACATCCTCGAAATCATCGATAAGATAAAACCTCTCAGTTCAC
GTTGTACTCTTTTAATCGGAAATAAATGCGATCTAATGCATCTCAGACAG
GTCCCCAAAAGTGACGCTAAAAAACTAGCCGATGATTTCGGCGTACACTT
CTTAGAGTGTTCAGCGGCAGAAAATTATGATGATATATTCAGCTCATTTA
CAAGACTCTTAGTGGAAGCTATGATTGCACAAAGTGCTAAGAAACATTCA
TGGGACGATCAGAACGCTGATGATGTTAAACAGAACGAGAATCGATTACG
TAAACGTTCCCTTTCGACGGGACAAGCACCTAGTAAAGACAGTAACAACA
ATACGTCATTCCTTGGCGGATTACGTGAAAAGAAAGACTCTATGATTAAA
ATTGATGAACGTATACCAAGCCCCGTTGAACAGCGTGATACGCCTGCACC
GCAACGTAAGCAATCACTACGGCGTAAAATATCCGGCATAGGATCAAAAC
TTGTAGGCTCTGGTCAGAGCAATAGGTGACCTCTTTAAGACGTTACtaca
gtttttatttttaatattttcttttttttgtaaataattcGAGGACAGGG
TTTAACTTAAAACTAAgcaatttttttattagagAATTTTGAGCCCCTTA
AATTTACTGTAAATAATCCAAAGTGTGAATATGACAGATTAACAAATATA
AATGCTAAAAACA
Run BLAST on NCBI

transcript from alignment at sc0000080:457358..463881-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007918 ID=TCONS_00007918|Name=TCONS_00007918|organism=Clytia hemisphaerica|type=transcript|length=6524bp|location=Sequence derived from alignment at sc0000080:457358..463881- (Clytia hemisphaerica)
ACGATTTCCATGGTAAATTATGAAACATTATAAATGCGAGGGAGTTGTCT
AAGAATTTAGTGGAAATACTGGAATAATTCTGTTTATTGACTAGCGCTTC
TGAGGCTTGTATACAGTAGATGACAGGGCCGGTCGTTAATATTGCTAGCT
ACTATTTCAAAGGCAATAAGATGAACTCTATTTTCTTACATGAAATGTCA
GAATATTTTGACCACATGCTTCCAGGAAATGTATGTTTTTGGAATTGATA
TTTAGGTAACTATGGTAAAAATGGCCATCCAACCGTTTTGTTTACAATGT
TTAGTCTTTATTTTTGGAAAAAAGGTTTTACTATCTTGAAAACTTTCTTC
TAATTCTGGACCCAATTTTATTCACACTTATGAATCTTCAATGGAATTCC
CTGTAATTTGTTTACAACTTTCACTGTCGAAGTGAGGGAAAACAGTTAAA
TAGGCAAAAATAGGATGGAAACTTAACAAGTGAATGGTGAAGAGGACTGA
TAACTTGTTTGTGAAATACTTCAAAATGGCGTGGCCTTTTTTATCTAATT
TACTTCGATTATTGTTGAATATTTATTCAATATTTCCTCGTTGAGATATT
CACTAGAGATTTGGGCAAAAATTTTCACCTTGAATATATTGGTGCTATAA
ATTGGGAGCAGGGGGTAATTTTTTGGGACAAAAAGTAATGAATATTTCAT
GAATCAGAGCTAAACTGAACATTAGCTTTGTCTATAGAAGTTACACGAGT
TAGTAACACGTTTGCTCTGAACAGTTATGCTGCAATAAAGGAAGAGATTG
GCTTTAAATCTTTCCTTCTCTATTTCAATAGAGTCAGCATTATTTTGTCA
TAGCGGCGCCTTTTACTCTGATGACGAATCAATAAGCAAAAAAGAGAGGA
TTAAGAGAAAGACTTTAGGCTATAATTTATAAGCTCTCTTTCATTTTTAT
CATAAACTTTATCGTTTGGGAAGTGAATATTTCTATTAACAATCTTGTGG
TGCAGACAAAGACAAGAGCAAGTCTGCTGGAATATGTTTTTATATTAATT
TTGAATATTTTTGAATATTTTCTTCAAAAGCTGAATGATGAAAGTTGATG
AAAAGGAAAAGTTTCCAATTTTGGCCAATTCTTATCGATGAAAAGTGAAT
ATTTAGATAACAAAAGGATAACGATTGAATGTCTAGCGTTTTCTATACTT
ATCGTTAATATAGTTTAAGTCCTCTGTGTTAGATTTGGAGTGATGATAAA
CTGTAGTATAGTTTCAGGGCTCTCATTCACCAGAAATCTCGGTATCAAGG
GCAAAGAATATGGTTCTTGGGGATGCGGTACGAGTTTTAAGATTTCGATT
TTCTAAACAATACTTTTTCATCTTTTTCCCATAGGAAAGTAGAAATAACC
ACCAACAACAAAGCAGCAATACTACCGACTCATCGACAAACAATACTTCC
ACAACCTCCTCAGCCAATAACAACAAAGCAACCATGAAGATGAAAGAGCA
GAAAGATTTTGATAATATTCACATTGCATTGGCTGGTGCAAAGAATTGTG
GGAAATCAGGTAAAAAATTCTAAAAATTCTAAGAAACATCTACATCATTA
TAAAAGCTTAAATCTAGACTTGAAACTACAAGGCCCTCTATATTAAGTCC
ATACTGAAACTAACGTTTTCCATTTAAACTTAATAAGCCAAATGAAATTA
TGAAAAGCTATGAAATTCTCAATCTACTTGCAGCACTGGCGGTTCGTTAT
TTGACCAAACGTTTCATTGGAGAGTACGATTCACACAAAGGTGAGTGAAA
TAAAGAGCTTTGATGACCAAAGAACATGCTTGGCAACTTGTTGAATCGGA
AAGCCTTTAGGACCTGTTATTTTGATAAGCGACACCCAGTACCCGTTTTT
TATAATTAAGAACTATGGAAGAACATAATCCTTCGATGGCCAAAATGTTA
AGAGCAAGTTAAGAGCATTTGAAGGCTTTGGGGACTCTAAACACCCGATT
TCATATGAAAACGGATAAAAATACTCACAAAATCGGGAAAATTAGGCTTA
AAACTCAAAAGGTTAAGAACATCCCTTACAAAAAAACGTGTATGGTTTTT
ACTCATGTCAGAAGAGAAATCAATTCATTTTACATTAATCATAACGTTTT
CGAGTGATGAAAATACTCGGTAGCATCAAAAGTACATTAGAGATTATAAT
TTTGATTTTTTTTCTTTTGGTCTTGTTTAAGATGACATATGGCATCGAAG
TATGACAGTTGCTGACAGAGAAGTTCGTGTATCACTCAAAGATACCACTG
GAACGGTACGTTGGTTCACTCTTTCATTCATTCATTCATTCATTCATTCN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAACACCCGCACC
TTTAATCAGTTGGACCACAGCAATCGTAGTTGTCTACTCCATCACAGATC
GAAACAGTTTCGCATTGGCACGACACATCCTCGAAATCATCGACAAGATA
AAACCTCTCAGTTCACGGTGTACTCTTTTAATCGGAAATAAATGCGATCT
AATGCATCTCAGACAGGTCCCTAAAAGTGATGCTAAAAAACTAGCCGATG
ATTTCGGCGTACACTTCTTAGAGTGTTCAGCGGCAGAAAATTATGATGAT
ATATTCAGCTCATTTACAAGACTCTTAGTGGAAGCTATGATTGCACAAAG
TGCTAAGAAACATTCATGGGACGATCAGAACGCTGATGATGTTAAACAGA
ACGAGAATCGATTACGTAAACGTTCCCTTTCGACGGGACAAGCACCTAGT
AAAGACAGTAACAACAATACGTCATTCCTTGGCGGATTACGTGAAAAGAA
AGACTCTATGATTAAAATTGATGAACGTATACCAAGCCCCGTTGAACAGC
GTGATACGCCTGCACCGCAACGTAAGCAATCACTACGGCGTAAAATATCC
GGCATAGGATCAAAACTTGTAGGCTCTGGTCAGAGCAATAGGTGACCTCT
TTAAGACGTTACTACAGTTTTTATTTTTAATATTTTTCTTTTTTTTGTAA
ATAATTCGAGGACAGGGTTTAACTTAAAACTAAGCAATTTTTTTATTAGA
GAATTTTGAGCCCCTTAAATTTACTGTAAATAATCCAAAGTGTGAATATG
ACAGATTAACAAATATAAATGCTAAAAACATTTATCTTCTTTATACCATG
TCCCCTGATAACACCCCGACCCTACTATGCTCAACCAGCCTCTTAAAAAG
ATACGTAGAAAATAACAATTTTCACAGTGGTCTACAGATTCCTCCTCAAT
CGAAAATATGAAGTGAAACATAGGGGATCGCTTCNGTTGCTGACAGAGAA
GTTCGTGTATCACTCAAAGATACCACTGGAACGGTACGTTGGTTCACTCT
TTCATTCATTCATTCATTCATTCATTCTATTGAAAACAAAAGTAGTCCCC
GAATGTGAGAAGAGAAAACAAAACTGCTTTAATAGAGACAAAAATTCGCA
GCCTCAGTGATCAGCAAAGGTTTAAACTATGAGAAGAAATCTCTCATGAA
CCTTTCTTTCTATCCTTTATAGAGCTGGCTAAAAACACCCGCACCTTTAA
TCAGTTGGACCACAGCAATCGTAGTTGTTTACTCCATCACAGATCGAAAC
AGTTTCGCATTGGCACGACACATCCTCGAAATCATCGATAAGATAAAACC
TCTCAGTTCACGTTGTACTCTTTTAATCGGAAATAAATGCGATCTAATGC
ATCTCAGACAGGTCCCCAAAAGTGACGCTAAAAAACTAGCCGATGATTTC
GGCGTACACTTCTTAGAGTGTTCAGCGGCAGAAAATTATGATGATATATT
CAGCTCATTTACAAGACTCTTAGTGGAAGCTATGATTGCACAAAGTGCTA
AGAAACATTCATGGGACGATCAGAACGCTGATGATGTTAAACAGAACGAG
AATCGATTACGTAAACGTTCCCTTTCGACGGGACAAGCACCTAGTAAAGA
CAGTAACAACAATACGTCATTCCTTGGCGGATTACGTGAAAAGAAAGACT
CTATGATTAAAATTGATGAACGTATACCAAGCCCCGTTGAACAGCGTGAT
ACGCCTGCACCGCAACGTAAGCAATCACTACGGCGTAAAATATCCGGCAT
AGGATCAAAACTTGTAGGCTCTGGTCAGAGCAATAGGTGACCTCTTTAAG
ACGTTACTACAGTTTTTATTTTTAATATTTTCTTTTTTTTGTAAATAATT
CGAGGACAGGGTTTAACTTAAAACTAAGCAATTTTTTTATTAGAGAATTT
TGAGCCCCTTAAATTTACTGTAAATAATCCAAAGTGTGAATATGACAGAT
TAACAAATATAAATGCTAAAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004470XLOC_004470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007918-exon-sc0000080-1575043694:463627..463881TCONS_00007918-exon-sc0000080-1575043694:463627..463881Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1575043694:462323..462497TCONS_00007918-exon-sc0000080-1575043694:462323..462497Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1575043694:462092..462148TCONS_00007918-exon-sc0000080-1575043694:462092..462148Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1575043694:461577..461650TCONS_00007918-exon-sc0000080-1575043694:461577..461650Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1575043694:457358..458159TCONS_00007918-exon-sc0000080-1575043694:457358..458159Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1510915933:463627..463881TCONS_00007918-exon-sc0000080-1510915933:463627..463881Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1510915933:462323..462497TCONS_00007918-exon-sc0000080-1510915933:462323..462497Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1510915933:462092..462148TCONS_00007918-exon-sc0000080-1510915933:462092..462148Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1510915933:461577..461650TCONS_00007918-exon-sc0000080-1510915933:461577..461650Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1510915933:457358..458159TCONS_00007918-exon-sc0000080-1510915933:457358..458159Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1491911889:463627..463881TCONS_00007918-exon-sc0000080-1491911889:463627..463881Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1491911889:462323..462497TCONS_00007918-exon-sc0000080-1491911889:462323..462497Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1491911889:462092..462148TCONS_00007918-exon-sc0000080-1491911889:462092..462148Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1491911889:461577..461650TCONS_00007918-exon-sc0000080-1491911889:461577..461650Clytia hemisphaericaexon
TCONS_00007918-exon-sc0000080-1491911889:457358..458159TCONS_00007918-exon-sc0000080-1491911889:457358..458159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:457358..463881 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	26.9888	9.20934	0	0.547457	0.613964	0	0	0	0.621098	0.622633	1.59378	0.864948	0	0	0.991049	1.36608	1.66228	2.53411	1.85283	0.765603	0	0	1.46565	0.586268	0	0
Blast
[Close]
BLAST of TCONS_00007918 vs. Swiss-Prot (Human)
Match: RSLBA (Ras-like protein family member 11A OS=Homo sapiens GN=RASL11A PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.707e-31
Identity = 61/170 (35.88%), Postives = 97/170 (57.06%), Query Frame = 1 
Query:  385 NIHIALAGAKNCGKSALAVRYLTKRFIGEYDSHKDDIWHRSMTVADREVRVSLKDTTGTSWLKTPAP--------LISWTTAIVVVYSITDRNSFALARHILEIIDKIKPLSSRCTLLIGNKCDLMHLRQVPKSDAKKLADDFGVHFLECSAAENYDDIFSSFTRLLVEA 870
            +I +A+ GA   GKSA+ VR+LTKRFIG+Y+ +   ++ R + V   ++ + ++DT G   ++   P         + W    ++VYSITD +S+   R + + I K+ P S    +++GNK DL+H RQV   D  +LA++ G  FLE S +ENY+D+   F  L  E 
Sbjct:   27 DIKLAVLGAGRVGKSAMIVRFLTKRFIGDYEPNTGKLYSRLVYVEGDQLSLQIQDTPGGVQIQDSLPQVVDSLSKCVQWAEGFLLVYSITDYDSYLSIRPLYQHIRKVHPDSKAPVIIVGNKGDLLHARQVQTQDGIQLANELGSLFLEISTSENYEDVCDVFQHLCKEV 196
The following BLAST results are available for this feature:
BLAST of TCONS_00007918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSLBA2.707e-3135.88Ras-like protein family member 11A OS=Homo sapiens... [more]
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