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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007930 ID=TCONS_00007930|Name=TCONS_00007930|organism=Clytia hemisphaerica|type=transcript|length=1979bp TTTAGGAAGTATCATTTTGTTCATCTTATACCTTTGTAAGACGGTGATCT AAAGTGAACTAGAAGCTTGTCCAGTACAGAAATTTCATTAATGGTATAAA TTCAATGTACTTTATTCATCATCGCTAATCGTTCCTTCATTACCTTTCAG AACAAAAAAACATGACGGAACTGTTCAAATTAACCTTGCTTTTCTTACAA CTGACTACATTCAGTCAAAGTAGTGCATCAAGCTTAGAAATGGTGCGAGA TTTCATCAAAGATTCATTATATTGTGGAAATGACGTCACATGTTCAGACC TCGGTGCCGTACAATTGACGTCCAAAGAATGTGATTGTCGAGGAGGGACG TTCATGAAAGTTGGAGAAACATACAAATGCGTCAAAGATACAACTAGCGT TTCATCAGAATGCGAGTTCTACTTCaaagaatatgaaaatgaaattccaa CCATCTCCGTCCACACATCAATGGCTTCAGAATTCATGGAGCCTGTGGTT TCCAAGACAACGCAATGCACAATGATGGCACTTACTTCAGTGGATTATTT CAATGTGGGCTTACAAACATGGATACCTTTCACCTCCTCGTCTTTCACTG TATTGAGATCAAGCTCAGGATCTTTTTCAATTAGATGGATCAACCCATTT AGTGTAGACAAGGACTTATACAGTGGCAACTTGATCAAATTCAATTTGAA CTGCGACTCCTTGACGAAACAAACTAAAAGTTCGTATTGCGCAATCGGGA AAATCGTTGGATCAAGAAATTGGACTGACAGTACAGGAGTATGCAGTCCA TCTGTAAAGcCAACAGCATTTTCACCACCAGCACCAACTACTGGAACTTC CGGCGATGGCAAATCGTCCTCAAAAGCGCCGTTGATTGGTGCCATAGTGG CGTCCCTTCTCATCCTCGTCTTGATCGTCGTAGTCGTTCTTTTCTATAGC AAACGAAAATGTCCTTCGTGCTGTcataaagaagaaaagaaagaccaAGT GATTATGAAGAAACATCCCAGCTTGTCCGATattcaaatcaaaaataact caGATTATGCAGAGCCGAGCGAAATCCAGTTCCATCCAGCGTTAGAAAGT CCAACCAATTTCGAAAACAAATCATATTTAACAGCATTGAGAGGAGGGAA CAACTTGCTCGTCAATAATAACAAAACAAATTACGTCAACTTTCCACATC ACGCGAACGGCGATTTGGAGCCGGACCAAGGGCCCACCAAACCTCTGATG ACGAGTAATAATGATTATGAACAAATATACGAAGATCCAGACAAACAAAC GAACAATTATGAACCTTTGGGGGACATTGCTGAACGACCCACTTATCATA CTCTGAACATTCCaactgaaaatgaagatgagtTTTATGAAGACATGACG AAATCTGGTACTGTATGAAAGAATGACGCTTTTAAGAAGGTGGAAATTGa tttttgctgatgtcagcatatAAATCTTATGAAAAGTGAAATGCTGATTA CGATCTTCATTCAAGGAAAGTGGCAATACCTTATTTACTACAACATCCAG CGCCCTTGGACGTTCGTGTACCATTATGTCAAGTGACAAAATTGTCTTCT TTTTGAATGGATACCGACTGGAAACAATAACAGATGAAATGCTTTAAAGC GACAACAAAACAGAATTGCATATATACTGCAACTGAATTATATTATATAT GACTTTCTAACAACTGtaaataatttttgagaaagaaaaagataattCAC CGAAGCAAAACTATGAATGAGGAATATATTCGAAGAAACATTTTGCTAGT CAAGACGGATTGGTCTCGGGATTAATAATCATATCATATAGCCTAGAAGC TCAGATTTCCGAGAAAAAAAGGATTCGAGAAAGTATTTTGTCAGGGAAGA TTTTTTACCTTTGTCAAAGATTCCAGTTGTAAATCAAATTAAGGATATTG ACAAGTTGAGTTTGAAGAATTTCAAATcc Run BLAST on NCBI protein sequence of TCONS_00007930-protein >TCONS_00007930-protein ID=TCONS_00007930-protein|Name=TCONS_00007930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MTELFKLTLLFLQLTTFSQSSASSLEMVRDFIKDSLYCGNDVTCSDLGAV QLTSKECDCRGGTFMKVGETYKCVKDTTSVSSECEFYFKEYENEIPTISV HTSMASEFMEPVVSKTTQCTMMALTSVDYFNVGLQTWIPFTSSSFTVLRS SSGSFSIRWINPFSVDKDLYSGNLIKFNLNCDSLTKQTKSSYCAIGKIVG SRNWTDSTGVCSPSVKPTAFSPPAPTTGTSGDGKSSSKAPLIGAIVASLL ILVLIVVVVLFYSKRKCPSCCHKEEKKDQVIMKKHPSLSDIQIKNNSDYA EPSEIQFHPALESPTNFENKSYLTALRGGNNLLVNNNKTNYVNFPHHANG DLEPDQGPTKPLMTSNNDYEQIYEDPDKQTNNYEPLGDIAERPTYHTLNI PTENEDEFYEDMTKSGTV Run BLAST on NCBI transcript from alignment at sc0000080:551190..556591- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007930 ID=TCONS_00007930|Name=TCONS_00007930|organism=Clytia hemisphaerica|type=transcript|length=5402bp|location=Sequence derived from alignment at sc0000080:551190..556591- (Clytia hemisphaerica) TTTAGGAAGTATCATTTTGTTCATCTTATACCTTTGTAAGACGGTGATCT
AAAGTGAACTAGAAGCTTGTCCAGTACAGAAATTTCATTAATGGTATAAA
TTCAATGTACTTTATTCATCATCGCTAATCGTTCCTTCATTACCTTTCAG
AACAAAAAAACATGACGGAACTGTTCAAATTAACCTTGCTTTTCTTACAA
CTGACTACATTCAGTCAAAGTAGTGCATCAAGCTTAGAAATGGTGCGAGA
TTTCATCAAAGATTCATTATATTGTGGAAATGACGTCACATGTTCAGACC
TCGGTGCCGTACAATTGACGTCCAAAGAATGTGATTGTCGAGGAGGGACG
TTCATGAAAGTTGGAGAAACATACAAATGCGTCAAAGATACAACTAGCGT
TTCATCAGGTACTTATTCCTCACATAAATATTATCAGTGAAAACTTTTTA
ACGAGATTTTTTGCTTATTTGATGCCAAGCAAACAAACCTTAGAATTCTA
ATTTATTCCCATGACTCCTTCGAATGACGTGATTTGACTTAATTTGATCC
TGGTGATAAGCGGTCATAAACTTAGACCCAAAACGCCTTCCATGCAGTTT
TTGTAATGGGTCAGCACATTTTAAACTTTAATCTCGTTTGTCGAATAGAC
AGTTAGTACCAGATTGCTATTAAATACATAAATGTTGTTGATACAATCTG
AAAACATCCTAAGTCCAAGACAGGCTACAAAGGAAACACCCCTTTCTCAC
AAACCATTTTTAGGATTTTTTTAGCCAATTGGGGTAAAAACAACGGACTG
AAACTTGGTAGGGATTTATACTCCCATATTTTTTATGGCTTGGGATTTGA
ATTCCATTGTTTTCAAGTTAGAAGCTCATGCTAATAAAAAAAGCATAATA
TTATGCAGTGAAATTGGTATATTTGATTATTTTCAGTGGGGACAAAATTG
GAGTATAATTTTCCACTGGGGGCAATATTTTGACCTATTTTTCCGATGAG
AAGGGGTCCAAGGGTGTCTGTGAGAATGGGGTGTAAAGAATGAGCTTCTA
TTCAATAGCTGCTGTCATCATTTTATGATTTTCTGCCTTGCCACAGTGAA
CAATCCTTGACAAAGTTGAATTTTTTAACTTTTCTTTTTTCATCTTTTTG
CTGACCGCATAAGCTAGTTTTTGAAGTATCGTAAAAAGTGTCTGTCATAG
AGCGCAAGGCTGAAAAAAGGTAGATAAGGAAGTTTGTGGCGGCTGGCCTG
TGTTGGAGTAAGGATGATTGAGCAGATTTCTTTCACATGTTGATAGGACT
GATAAAAAACGCTTGTATCATCCTTATTTGACATTTCAGAATGCGAGTTC
TACTTCAAAGAATATGAAAATGAAATTCCAACCATCTCCGTCCACACATC
AATGGCTTCAGAATTCATGGAGCCTGTGGTTTCCAAGACAACGCAATGCA
CAATGATGGCACTTACTTCAGTGGATTATTTCAATGTGGGCTTACAAACA
TGGATACCTTTCACCTCCTCGTCTTTCACTGTATTGAGATCAAGCTCAGG
ATCTTTTTCAATTAGAGTAAGAATCTTTTTGGAGGCCAAGATTTCTAGTC
TAACGCTTTTGATTGAAAAAGTAAGTAAGTCTCCGAAGATGCTAACTACT
TTAGCCGTATATACAAACTTTCGCGAGAAGAAACTTTCGCAAGGTCGAAA
ATTCATTCGTGAAATTTGCGACATTTACTTTCGCAAATTTGATTTTGCCT
TATAAGGCTTTAACAGGCTAAAAAAAGATTTTTTCCGAACAAGCCCCCTA
GATTTCTTTTTTCATTAACAATAGCAACTTTTAGCTTGCACAAAGGTTTC
ATAGACGACTAAAATTGTCCTCTCCATCACTTTTTGCTTTATTTCTACTA
TGTCTCAATTAGTCTAGCTTGCTAGACTAAAAGTAGCCACACTATTATTT
TGCTGTGTCAACTCTTCAAACACTTGTTAGTCAGGCTAGCAGCTGGTTAA
CAGGTACATGGGTTGTAAAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGGGGGGGGGCTGGAATAAGAATGTCCTGGGTGGAAAATTTTCGA
AAAATAATTAGCGGGGGGGACGGCTATTAGGTACCCGAGAGTATAAGGCT
TTAACAGGCTAAAAAAAGATTTTTTCCGAACAAGCCCCCTAGATTTTTTT
TTTCATTAACAATAGCAACTTTTAGCTTGCACAAAGGTTTCATAGACGAC
TAAAATTGTCCCCTCCATCACTTTTTGCTTTATTTCTACTATGTCTGAAT
TAGTCTAGCTTGCTAGAATAAAAGTAGCCACACTATTATTTTGCTGTGTC
AACTCTTCAAACAATTGTGAGTCAGGTTAGCAGCTGGTTAACAGGTACAA
GGGTTGTAAAGAAAATTACTTGTGTTTATACTTACAGTGGATCAACCCAT
TTAGTGTAGACAAGGACTTATACAGTGGCAACTTGATCAAATTCAATTTG
AACTGCGACTCCTTGACGAAACAAACTAAAAGTTCGTATTGCGCAATCGG
GAAAATCGTTGGATCAAGAAATTGGACTGACAGTAAGCATATCTATAACA
TATCATTTGATGATCTTTCAAAGTAGAAGAACACTATAAAATGCTTCAGT
TTAAATACACAAAGTTCAAAATTGACACTGATTCTAGCTTCTGAAGAAAT
AAAATGTGAGTACATTCGAACGTCCATTCAAATAATTTCCATCTTTAAAT
CGGATCACAGTACCTTTTCAAAATCAGTTCTTTGTGATAATCGGGCATTA
AAACATAAACGATTTCTCGATCGCATTTTAGGTACAGGAGTATGCAGTCC
ATCTGTAAAGGTGAGTCAATGAAAAGTTCTTATTTCTCAAACTGTTTAGT
AATGCTAGACATTCTCCTCTCATCCTAATATCGTGGAGTTTTTAGTTAAG
TGTCACAAGGAACAAAAATTGTTCATGTCCTGTTCCGAATTCTTTTCAGT
TTTCATCTACGCTGCACAATAAATTCCTATTCATCGATTAGGCGTAAGTG
AATCATTTTTTTGAATCTCGACTTTCTTCATTTTCAGCCAACAGCATTTT
CACCACCAGCACCAACTACTGGAACTTCCGGCGATGGCAAATCGTCCTCA
AAAGCGCCGTTGATTGGTGCCATAGTGGCGTCCCTTCTCATCCTCGTCTT
GATCGTCGTAGTCGTTCTTTTCTATAGCAAACGAAAATGTCCTTCGTGCT
GTCATAAAGAAGAAAAGAAAGACCAAGTGATTATGAAGAAACATCCCAGC
TTGTCCGATATTCAAATCAAAAATAACTCAGGTAGGTTCCCCTCTAAATA
CCGACATAACATAAAAGCTTACACGTTCACGTCCCTATAACTGCTTATAT
TTTTGTTTGGGTGGCACGTGCTGAGGCTAATAACAACTCAACATTTAATT
TGTCGATGTAGGCCTTTTTGTCAAAGAGGAGTTGAGATTTAAAAAAAATT
TCTATTTCAAACTTTTCGAAAAGAAAGCTGACCAGATTTGCTATAAAATA
ACCTGAAATCAGATCGTGATTGTTTTCTGTATACCACGCTAAAGCTCTTA
AAGATGACACGTAACAAGATGTTTGTTATGAAAATGCCTATTTTCCTCAA
ATGGTTAATTTTCAAACGTCTTGAGAGGTTTACCGCGCATTATGACCATC
TGTTATATCAGGTTACTATAGAATAATCGAAAAATTGTTTCTGTTCTTCT
AATCCCATACTCCTGGCTCATGTCAAAGTTTTTGGTCACTGGGATAAAAT
AAAGCCTCCGGATAGGGTATTACCCCGATAGAAAGGGGTATGGAGATGTT
CCTATTAACAGGAAACCTTCCAGAGTCCCTTGCTCTCGAAAACATTGTTA
TAAGAATCAGTCTCATGCAGGGATCTATTTTGAAATTCTTTAAAAAACTT
TGACAAAACTTTGACAAAACTTTTATCACGCGAGGGTATGTTTTTCGAAC
GATACACCAAAGTTCCTAGTCCCAATTGNTCGAACGATACACCTCAATTT
GACGACAAGTCTAAAGTTCCTAGTCCCAATTAAGGATATACTGTGCGAGT
CTAACTGCGTCAATCTGCTTTGAAGTGAGCGCAATTGGTAGAATAAATAA
TCTTGAATCATTCTGAAAGTTTCTCCAATCGCCTGGTTGTTTGTAATGAA
TATTTAAGAATGGGAAGCTTGTTGATTTTTCAATCAAACAATTTATGTCG
GTTGCTTTTCGCTATCAACATCACAAAATTGATTCTTTGCCAGTACTTAA
TCATCAAATTGAATTTATTTGTTCAGATTATGCAGAGCCGAGCGAAATCC
AGTTCCATCCAGCGTTAGAAAGTCCAACCAATTTCGAAAACAAATCATAT
TTAACAGCATTGAGAGGAGGGAACAACTTGCTCGTCAATAATAACAAAAC
AAATTACGTCAACTTTCCACATCACGCGAACGGCGATTTGGAGCCGGACC
AAGGGCCCACCAAACCTCTGATGACGAGTAATAATGATTATGAACAAATA
TACGAAGATCCAGACAAACAAACGAACAATTATGAACCTTTGGGGGACAT
TGCTGAACGACCCACTTATCATACTCTGAACATTCCAACTGAAAATGAAG
ATGAGTTTTATGAAGACATGACGAAATCTGGTACTGTATGAAAGAATGAC
GCTTTTAAGAAGGTGGAAATTGATTTTTGCTGATGTCAGCATATAAATCT
TATGAAAAGTGAAATGCTGATTACGATCTTCATTCAAGGAAAGTGGCAAT
ACCTTATTTACTACAACATCCAGCGCCCTTGGACGTTCGTGTACCATTAT
GTCAAGTGACAAAATTGTCTTCTTTTTGAATGGATACCGACTGGAAACAA
TAACAGATGAAATGCTTTAAAGCGACAACAAAACAGAATTGCATATATAC
TGCAACTGAATTATATTATATATGACTTTCTAACAACTGTAAATAATTTT
TGAGAAAGAAAAAGATAATTCACCGAAGCAAAACTATGAATGAGGAATAT
ATTCGAAGAAACATTTTGCTAGTCAAGACGGATTGGTCTCGGGATTAATA
ATCATATCATATAGCCTAGAAGCTCAGATTTCCGAGAAAAAAAGGATTCG
AGAAAGTATTTTGTCAGGGAAGATTTTTTACCTTTGTCAAAGATTCCAGT
TGTAAATCAAATTAAGGATATTGACAAGTTGAGTTTGAAGAATTTCAAAT
CC Coding sequence (CDS) from alignment at sc0000080:551190..556591- >TCONS_00007930 ID=TCONS_00007930|Name=TCONS_00007930|organism=Clytia hemisphaerica|type=CDS|length=1257bp|location=Sequence derived from alignment at sc0000080:551190..556591- (Clytia hemisphaerica) ATGACGGAACTGTTCAAATTAACCTTGCTTTTCTTACAACTGACTACATT CAGTCAAAGTAGTGCATCAAGCTTAGAAATGGTGCGAGATTTCATCAAAG ATTCATTATATTGTGGAAATGACGTCACATGTTCAGACCTCGGTGCCGTA CAATTGACGTCCAAAGAATGTGATTGTCGAGGAGGGACGTTCATGAAAGT TGGAGAAACATACAAATGCGTCAAAGATACAACTAGCGTTTCATCAGAAT GCGAGTTCTACTTCAAAGAATATGAAAATGAAATTCCAACCATCTCCGTC CACACATCAATGGCTTCAGAATTCATGGAGCCTGTGGTTTCCAAGACAAC GCAATGCACAATGATGGCACTTACTTCAGTGGATTATTTCAATGTGGGCT TACAAACATGGATACCTTTCACCTCCTCGTCTTTCACTGTATTGAGATCA AGCTCAGGATCTTTTTCAATTAGATGGATCAACCCATTTAGTGTAGACAA GGACTTATACAGTGGCAACTTGATCAAATTCAATTTGAACTGCGACTCCT TGACGAAACAAACTAAAAGTTCGTATTGCGCAATCGGGAAAATCGTTGGA TCAAGAAATTGGACTGACAGTACAGGAGTATGCAGTCCATCTGTAAAGCC AACAGCATTTTCACCACCAGCACCAACTACTGGAACTTCCGGCGATGGCA AATCGTCCTCAAAAGCGCCGTTGATTGGTGCCATAGTGGCGTCCCTTCTC ATCCTCGTCTTGATCGTCGTAGTCGTTCTTTTCTATAGCAAACGAAAATG TCCTTCGTGCTGTCATAAAGAAGAAAAGAAAGACCAAGTGATTATGAAGA AACATCCCAGCTTGTCCGATATTCAAATCAAAAATAACTCAGATTATGCA GAGCCGAGCGAAATCCAGTTCCATCCAGCGTTAGAAAGTCCAACCAATTT CGAAAACAAATCATATTTAACAGCATTGAGAGGAGGGAACAACTTGCTCG TCAATAATAACAAAACAAATTACGTCAACTTTCCACATCACGCGAACGGC GATTTGGAGCCGGACCAAGGGCCCACCAAACCTCTGATGACGAGTAATAA TGATTATGAACAAATATACGAAGATCCAGACAAACAAACGAACAATTATG AACCTTTGGGGGACATTGCTGAACGACCCACTTATCATACTCTGAACATT CCAACTGAAAATGAAGATGAGTTTTATGAAGACATGACGAAATCTGGTAC TGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007930-exon-sc0000080-1575043694:556184..556591 | TCONS_00007930-exon-sc0000080-1575043694:556184..556591 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1575043694:555026..555252 | TCONS_00007930-exon-sc0000080-1575043694:555026..555252 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1575043694:553860..554004 | TCONS_00007930-exon-sc0000080-1575043694:553860..554004 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1575043694:553582..553610 | TCONS_00007930-exon-sc0000080-1575043694:553582..553610 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1575043694:553111..553354 | TCONS_00007930-exon-sc0000080-1575043694:553111..553354 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1575043694:551190..552115 | TCONS_00007930-exon-sc0000080-1575043694:551190..552115 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1510915933:556184..556591 | TCONS_00007930-exon-sc0000080-1510915933:556184..556591 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1510915933:555026..555252 | TCONS_00007930-exon-sc0000080-1510915933:555026..555252 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1510915933:553860..554004 | TCONS_00007930-exon-sc0000080-1510915933:553860..554004 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1510915933:553582..553610 | TCONS_00007930-exon-sc0000080-1510915933:553582..553610 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1510915933:553111..553354 | TCONS_00007930-exon-sc0000080-1510915933:553111..553354 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1510915933:551190..552115 | TCONS_00007930-exon-sc0000080-1510915933:551190..552115 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1491911889:556184..556591 | TCONS_00007930-exon-sc0000080-1491911889:556184..556591 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1491911889:555026..555252 | TCONS_00007930-exon-sc0000080-1491911889:555026..555252 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1491911889:553860..554004 | TCONS_00007930-exon-sc0000080-1491911889:553860..554004 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1491911889:553582..553610 | TCONS_00007930-exon-sc0000080-1491911889:553582..553610 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1491911889:553111..553354 | TCONS_00007930-exon-sc0000080-1491911889:553111..553354 | Clytia hemisphaerica | exon |
TCONS_00007930-exon-sc0000080-1491911889:551190..552115 | TCONS_00007930-exon-sc0000080-1491911889:551190..552115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000080 | supercontig | sc0000080:551190..556591 - |
Blast
The following BLAST results are available for this feature:
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