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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007932 ID=TCONS_00007932|Name=TCONS_00007932|organism=Clytia hemisphaerica|type=transcript|length=1112bp
TGAATGCGAGGGGTACGGCTTTCGTATTTTGAACTGTGAACCATTCATGT
TGATGCCAAACGCCTCAAGGAAAATCGATATCACATTTATTCCTGATTTT
ACGACATCAAGAGTGACAAGAAATTTACGAGTATTAACCACCATGGGGCA
AGCTTTAGATTTCACTTTACTGGCTACATTACCACACCACCTATTACCAT
TATGCGCCAGTGCTCTACCACGCCCTTACTGGGAACCATACCTCCATATC
GTGACAGCTATAGTGATGTCaaccattttcatttttataattttctttgc
ttattTTGACGCTCAGAAGTATGTGGTTCAGTGTACGTTCACTGCTGGCG
GTCTTTCGAACCGAACACATGGAAAAGATAATATGGATATCTATACAGCT
GGTACTGTATTTGATCTCAACGCAATCGCTGGCGTCAAAGTAAGGATTAc
ggataaaaaagaaaaagcaaacagCGAAGCAACGCTACATCATCGATCAT
CTGCAACCAACAAGGTACATCAACCTCTGACCAAAACAAATAGTAACCCT
AAAGGATCACGGGAACAACTTGCTCGTGCTTCATCGAAAGAACGTAAAGG
CTCGCTCTCCGATTGCAGTACGTCATCACTCCCCTCGCGGAAGAACTCGG
AAACAAACTCATCCGTTCACGATGAAAAACCGGATACTAAAAACGGATTA
AAAGAACCAAACACGCCTCCCAAACGGAATAAGCGTAGACAAGAATCACA
CCGGCCGAACGGACGTTACACCTTGTATCAAGAACCTACTGAACCGAAAA
TAGTGACGGAGGAGATTAGTGACCCATGGGAAAAGAGGAAGCTGAAAGAA
CTGGAAGATGAAAAGAAGATCCGAAAGAAATCCAAACCAACGAAGAAAGA
TACACACGCTACACTTCACAAAGAGAACAGTAATGGAAGTAGTGTCGAAG
ATGATCACCAAGAAGAAAAACCTCACGGCTTTACGACcgttgaaaaagtg
aaaaatcgaAAACGTATGGAATATTCTGGACATGGAACAATGGATAAATT
AGATGAGATTTCTCTCAACGGACCACGACCTGATGCGTACCCACGAAAAA
CGACTGCTCGNN Run BLAST on NCBI transcript from alignment at sc0000080:563056..565758- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007932 ID=TCONS_00007932|Name=TCONS_00007932|organism=Clytia hemisphaerica|type=transcript|length=2703bp|location=Sequence derived from alignment at sc0000080:563056..565758- (Clytia hemisphaerica)
TGAATGCGAGGGGTACGGCTTTCGTATTTTGAACTGTGAACCATTCATGT
TGATGCCAAACGCCTCAAGGAAAATCGATATCACGTAAGTTTTTTATAAT
CCTTTTTTTGTTTACTTACTCTAGTGTCCTTAAAATTAAGAGATTCCGTG
GATTTCAAAAAGCTGCTTTTACACATCCCAGTTAACGGGTTTCTCAGCAA
ATAAATCAGTCATTACTATTAAACGTCCTGACCATTTAGATTTTACTTTT
CTGAATCAAGAATGGATTTTTCTTGGAAATTTATTCCATTGAAATATGAG
TATCTAAAGTATTTAACATGATGCAATAGCGAAGTTAAGCAAGTGTTTAT
TTAGACCGTTCAATGCGATATCGTAGGCCTATACATAATTGCATGGTTTG
CTTTGGAAAGTTATGTACAGGCCTACGGTATCGCACTTTACAGTCAAAAT
AAACCCGTGCTTAACCTCGATAATAATGATATAAAGTCGAGAATTTAGAC
GTCGGACCTTTAGGCGAGGGAGCAGAAACCAGATTTTCTTTTTCAACTGA
AATTGGGTGGGAACGTTTCATTTCTCATATGACTATTTGACACATTTTTA
CTGTCTCACTCCTCCGGTGGATACGCCAATAACAAACAACGAGATAGTCA
TTCAATATCGATTAATAGTTGTTTGTTACTGGTTTTTCTTTTGTAATCAC
GTCAACGAGTGCTGATTGAATGGCACGTGTCACAGATCACTGCTCGTCTT
TCATACTTAATGGACACTTTCTTTTTTCCTGTTTATGTAATCGAATTGCT
TATAATTAATTTAATCGCATTTCGGCGTTCTTTCAACATTTAGCTTATAA
CTTCTTGTGTAGTACTCTATCATGTAGTATCAGTCGCATAACTACATCTG
AAAAACCGACTGAAGAGAATATTAGAACACCTCTATACACTATAAGCAGA
ATACGTATAAAGTAAACAAGTTGCAGCCGAGATAACTTTCGTTTGGACTG
CATACATGTACTGTATTTCCTTGTTTCAAAGTTGATACAGTGAAACAAAT
ATATTGTGTAAAATACACAATACTCCAAGGACTCCTCATTCTGTCGGGGT
CGAAATTTCCTTGTACAGTGTAATTCACACATCCGAATAATATTTATATA
CATTACTGCTGATCAAGCATACTGCGTCAAAAGTGTTTTTTGTCAAATGC
TGAGCTTATGAGAAATTCAATATTTGCTTAGAGTGGTTTCGTACTAATCC
TACAAATTTCCTTTTTCTATCATTTCAGATTTATTCCTGATTTTACGACA
TCAAGAGTGACAAGAAATTTACGAGTATTAACCACCATGGGGCAAGCTTT
AGATTTCACTTTACTGGCTACATTACCACACCACCTATTACCATTATGCG
CCAGTGCTCTACCACGCCCTTACTGGGAACCATACCTCCATATCGTGACA
GCTATAGTGATGTCAACCATTTTCATTTTTATAATTTTCTTTGCTTATTT
TGACGCTCAGAAGTATGTGGTTCAGTGTACGTTCACTGCTGGCGGTCTTT
CGAACCGAACACATGGAAAAGATAATATGGATATCTATACAGCTGGTACT
GTATTTGATCTCAACGCAATCGCTGGCGTCAAAGTAAGGTAAGTCAATGG
TTTTGAATTTTTTTTTGGTTTTGATCACTATGGATATGCCCCTGTATCAC
AGGCCCAGCTTTTGACTCACTCCGCAATAGCAAAAATTTCTTGGTAGGAA
AAGAGCCTAAGCTCCCATCCCTATAGGGGAATTTGATAGAAGATATTGTT
CTCCAAAACTAATTTCGATGGGAATCCTTAATCTCACTAAAGGTTTAGCT
GAACCTGTTTAGAAATCTGTTTGATTTACATGAACGTTGATACACGTTAC
CAAAGGATAATTTGAATTACCTGGTCCAAGTTAGAATAGACAAAGGTTTT
GTATATGTGTTAGAATGATAAGAGCTCACCTTCATTTTTGCGTTAATTTA
AAGTGTATAGCATTGGTTTGTGTTCTCATTCACAGGATTACGGATAAAAA
AGAAAAAGCAAACAGCGAAGCAACGCTACATCATCGATCATCTGCAACCA
ACAAGGTACATCAACCTCTGACCAAAACAAATAGTAACCCTAAAGGATCA
CGGGAACAACTTGCTCGTGCTTCATCGAAAGAACGTAAAGGCTCGCTCTC
CGATTGCAGTACGTCATCACTCCCCTCGCGGAAGAACTCGGAAACAAACT
CATCCGTTCACGATGAAAAACCGGATACTAAAAACGGATTAAAAGAACCA
AACACGCCTCCCAAACGGAATAAGCGTAGACAAGAATCACACCGGCCGAA
CGGACGTTACACCTTGTATCAAGAACCTACTGAACCGAAAATAGTGACGG
AGGAGATTAGTGACCCATGGGAAAAGAGGAAGCTGAAAGAACTGGAAGAT
GAAAAGAAGATCCGAAAGAAATCCAAACCAACGAAGAAAGATACACACGC
TACACTTCACAAAGAGAACAGTAATGGAAGTAGTGTCGAAGATGATCACC
AAGAAGAAAAACCTCACGGCTTTACGACCGTTGAAAAAGTGAAAAATCGA
AAACGTATGGAATATTCTGGACATGGAACAATGGATAAATTAGATGAGAT
TTCTCTCAACGGACCACGACCTGATGCGTACCCACGAAAAACGACTGCTC
GNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007932-exon-sc0000080-1575043694:565675..565758 | TCONS_00007932-exon-sc0000080-1575043694:565675..565758 | Clytia hemisphaerica | exon |
| TCONS_00007932-exon-sc0000080-1575043694:564121..564480 | TCONS_00007932-exon-sc0000080-1575043694:564121..564480 | Clytia hemisphaerica | exon |
| TCONS_00007932-exon-sc0000080-1575043694:563056..563723 | TCONS_00007932-exon-sc0000080-1575043694:563056..563723 | Clytia hemisphaerica | exon |
| TCONS_00007932-exon-sc0000080-1510915933:565675..565758 | TCONS_00007932-exon-sc0000080-1510915933:565675..565758 | Clytia hemisphaerica | exon |
| TCONS_00007932-exon-sc0000080-1510915933:564121..564480 | TCONS_00007932-exon-sc0000080-1510915933:564121..564480 | Clytia hemisphaerica | exon |
| TCONS_00007932-exon-sc0000080-1510915933:563056..563723 | TCONS_00007932-exon-sc0000080-1510915933:563056..563723 | Clytia hemisphaerica | exon |
| TCONS_00007932-exon-sc0000080-1491911889:565675..565758 | TCONS_00007932-exon-sc0000080-1491911889:565675..565758 | Clytia hemisphaerica | exon |
| TCONS_00007932-exon-sc0000080-1491911889:564121..564480 | TCONS_00007932-exon-sc0000080-1491911889:564121..564480 | Clytia hemisphaerica | exon |
| TCONS_00007932-exon-sc0000080-1491911889:563056..563723 | TCONS_00007932-exon-sc0000080-1491911889:563056..563723 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:563056..565758 - |
Blast
BLAST of TCONS_00007932 vs. Swiss-Prot (Human)
Match: TM131 (Transmembrane protein 131 OS=Homo sapiens GN=TMEM131 PE=1 SV=3) HSP 1 Score: 95.1301 bits (235), Expect = 5.147e-21 Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 2
Query: 5 CEGYGFRILNCEPFMLMPNASRKIDITFIPDFTTSRVTRNLRVLTTMGQALDFXXXXXXXXXXXXXXXSALPRPYWEPYLHIVTAIVMSTXXXXXXXXAYFDAQ 316
CEGYGF+++NC+ F L NASR I I F PDFT SRV R L+ +TT G F L A+LP+H+L CA ALPRP WE L+I+ + +MS +F+ +I AY +AQ
Sbjct: 1041 CEGYGFKVVNCQEFTLSANASRDIIILFTPDFTASRVIRELKFITTSGSEFVFILNASLPYHMLATCAEALPRPNWELALYIIISGIMSALFLLVIGTAYLEAQ 1144
The following BLAST results are available for this feature:
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