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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007934 ID=TCONS_00007934|Name=TCONS_00007934|organism=Clytia hemisphaerica|type=transcript|length=1431bp
TAAAAAGAGGGGAGTTCACTTTAAACTAATTACAAATCATTATAAAGATT
ACAAACAAAGTTGTCGATGACAAGCCGAATGATATCATTATTTGATAAAA
CATGATGTAATGTGTAAACAGACGTCATTTTAAGGAGGGAAAGCAAAGTA
GAAAGGTGATAGACatgatgtttttgatgtttcaacTTGTTTGTTTACTT
TATGTAGAATCGACACCCAAAGCACGTGTGTATCCTTCTTTCACTGTCAA
AGGATCGTTCACGGCAACCAATGCCGGTCAACTCCCTGTAGAAGTCGCAT
CcatgaatatcaataattatgaATGCGAGGGGTACGGCTTTCGTATTTTG
AACTGTGAACCATTCATGTTGATGCCAAACGCCTCAAGGAAAATCGATAT
CACATTTATTCCTGATTTTACGACATCAAGAGTGACAAGAAATTTACGAG
TATTAACCACCATGGGGCAAGCTTTAGATTTCACTTTACTGGCTACATTA
CCACACCACCTATTACCATTATGCGCCAGTGCTCTACCACGCCCTTACTG
GGAACCATACCTCCATATCGTGACAGCTATAGTGATGTCaaccattttca
tttttataattttctttgcttattTTGACGCTCAGAAGTATGTGGTTCAG
TGTACGTTCACTGCTGGCGGTCTTTCGAACCGAACACATGGAAAAGATAA
TATGGATATCTATACAGCTGGTACTGTATTTGATCTCAACGCAATCGCTG
GCGTCAAAGTAAGGATTAcggataaaaaagaaaaagcaaacagCGAAGCA
ACGCTACATCATCGATCATCTGCAACCAACAAGGTACATCAACCTCTGAC
CAAAACAAATAGTAACCCTAAAGGATCACGGGAACAACTTGCTCGTGCTT
CATCGAAAGAACGTAAAGGCTCGCTCTCCGATTGCAGTACGTCATCACTC
CCCTCGCGGAAGAACTCGGAAACAAACTCATCCGTTCACGATGAAAAACC
GGATACTAAAAACGGATTAAAAGAACCAAACACGCCTCCCAAACGGAATA
AGCGTAGACAAGAATCACACCGGCCGAACGGACGTTACACCTTGTATCAA
GAACCTACTGAACCGAAAATAGTGACGGAGGAGATTAGTGACCCATGGGA
AAAGAGGAAGCTGAAAGAACTGGAAGATGAAAAGAAGATCCGAAAGAAAT
CCAAACCAACGAAGAAAGATACACACGCTACACTTCACAAAGAGAACAGT
AATGGAAGTAGTGTCGAAGATGATCACCAAGAAGAAAAACCTCACGGCTT
TACGACcgttgaaaaagtgaaaaatcgaAAACGTATGGAATATTCTGGAC
ATGGAACAATGGATAAATTAGATGAGATTTCTCTCAACGGACCACGACCT
GATGCGTACCCACGAAAAACGACTGCTCGNN Run BLAST on NCBI transcript from alignment at sc0000080:563056..568051- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007934 ID=TCONS_00007934|Name=TCONS_00007934|organism=Clytia hemisphaerica|type=transcript|length=4996bp|location=Sequence derived from alignment at sc0000080:563056..568051- (Clytia hemisphaerica)
TAAAAAGAGGGGAGTTCACTTTAAACTAATTACAAATCATTATAAAGATT
ACAAACAAAGTTGTCGATGACAAGCCGAATGATATCATTATTTGATAAAA
CATGATGTAATGTGTAAACAGACGTCATTTTAAGGAGGGAAAGCAAAGTA
GAAAGGTGATAGACATGATGTTTTTGATGTTTCAACTTGTTTGTTTACTT
TATGTAGAATCGACACCCAAAGCACGTGTGTATCCTTCTTTCACTGTCAA
AGGATCGTTCACGGCAACCAATGCCGGTCAACTCCCTGTAGAAGTCGCAT
CCATGAATATCAATAATTATGAATGCGAGGGGTACGGCTTTCGTATTTTG
AACTGTGAACCATTCATGTTGATGCCAAACGCCTCAAGGAAAATCGATAT
CACGTAAGTTTTTTATAATCCTTTTTTTGTTTACTTACTCTAGTGTCCTT
AAAATTAAGAGATTCCGTGGATTTCAAAAAGCTGCTTTTACACATCCCAG
TTAACGGGTTTCTCAGCAAATAAATCAGTCATTACTATTAAACGTCCTGA
CCATTTAGATTTTACTTTTCTGAATCAAGAATGGATTTTTCTTGGAAATT
TATTCCATTGAAATATGAGTATCTAAAGTATTTAACATGATGCAATAGCG
AAGTTAAGCAAGTGTTTATTTAGACCGTTCAATGCGATATCGTAGGCCTA
TACATAATTGCATGGTTTGCTTTGGAAAGTTATGTACAGGCCTACGGTAT
CGCACTTTACAGTCAAAATAAACCCGTGCTTAACCTCGCTAATAGTGATA
TAAAGTCGAGAATTTAGACGTGGGACCTTTAGGCGAGGGAGCAGAAATCA
GATTTTCTTTTTCAACTGAAATTGGGTGGGAACGTTTCATTTCTCATATG
ACTATTTGACACATTTTTACTGTCTCACTCCTCCGGTGGATACGCCAATA
ACAAACAACGAGATAGTCATTCAATATCGATTAATAGTTGTTTGTTACTG
GTTTTTCTTTTGTAATCACGTCAACGAGTGCTGATTGAATGGCACGTGTC
ACAGATCACTGCTCGTCTTTCATACTTAATGGACACTTTCTTTTTTCCTG
TTTATGTAATCGAATTGCTTATAATTAATTTAATCGCATTTCGGCGTTCT
TTCAACATTTAGCTTATAACTTCTTGTGTAGTACTCTATCATGTAGTATC
AGTCGCATAACTACATCTGAAAAACCGACTGAAGAGAATATTAGAACACC
TCTATACACTATAAGCAGAATACGTATAAAGTAAACAAGTTGCAGCCGAG
ATAACTTTCGTTTGGACTGCATACATGTACTGTATTTCCTTGTTTCAAAG
TTGATACAGTGAAACAAATATATTGTGTAAAATACACAATACTCCAAGGA
CTCCTCATTCTGTCGGGGTCGAAATTTCCTTGTACAATGTAATTCACACA
TCCGAATAATATTTATATACATTACTGCTGACCAAGCATACTGCGTCAAA
AGTGTTTTTTGTCAAATGCTGAGCTTATGAGAAATTCAATATTTGCTTAG
AGTGGTTTCGTACTAATCCTACAAATTTCCTTTTTCTATCATTTCAGATT
TATTCCTGATTTTACGACATCAAGAGTGACAAGAAATTTACGAGTATTAA
CCACCATGGGGCAAGCTTTAGATTTCACTTTACTGGCTACATTACCACAC
CACCTATTACCATTATGCGCCAGTGCTCTACCACGCCCTTACTGGGAACC
ATACCTCCATATCGTGACAGCTATAGTGATGTCAACCATTTTCATTTTTA
TAATTTTCTTTGCTTATTTTGACGCTCAGAAGTATGTGGTTCAGTGTACG
TTCACTGCTGGCGGTCTTTCGAACCGAACACATGGAAAAGATAATATGGA
TATCTATACAGCTGGTACTGTATTTGATCTCAACGCAATCGCTGGCGTCA
AAGTAAGGTAAGTCAATGGTTTTGAATTTTTTTTTGGTTTTGATCACTAT
GGATATGCCCCTGTATCACAGGCCCAGCTTTTGACTCACTCCGCAATAGC
AAAAATTTCTTGGTAGGAAAAGAGCCTAAGCTCCCATCCCTATAGGGGAA
TTTGATAGAAGATATTGTTCTCCAAAACTAATTTCGATGGGAATCCTTAA
TCTCACTAAAGGTTTAGCTGAACCTGTTTAGAAATCTGTTTGATTTACAT
GAACGTTGATACACGTTACCAAAGGATAATGTGAATTACCTGGTCCAAGT
TAGAATAGACAAAGGTTTTGTATATGTGTTAGAATGANAATTATGAATGC
GAGGGGTACGGCTTTCGTATTTTGAACTGTGAACCATTCATGTTGATGCC
AAACGCCTCAAGGAAAATCGATATCACGTAAGTTTTTTATAATCCTTTTT
TTGTTTACTTACTCTAGTGTCCTTAAAATTAAGAGATTCCGTGGATTTCA
AAAAGCTGCTTTTACACATCCCAGTTAACGGGTTTCTCAGCAAATAAATC
AGTCATTACTATTAAACGTCCTGACCATTTAGATTTTACTTTTCTGAATC
AAGAATGGATTTTTCTTGGAAATTTATTCCATTGAAATATGAGTATCTAA
AGTATTTAACATGATGCAATAGCGAAGTTAAGCAAGTGTTTATTTAGACC
GTTCAATGCGATATCGTAGGCCTATACATAATTGCATGGTTTGCTTTGGA
AAGTTATGTACAGGCCTACGGTATCGCACTTTACAGTCAAAATAAACCCG
TGCTTAACCTCGATAATAATGATATAAAGTCGAGAATTTAGACGTCGGAC
CTTTAGGCGAGGGAGCAGAAACCAGATTTTCTTTTTCAACTGAAATTGGG
TGGGAACGTTTCATTTCTCATATGACTATTTGACACATTTTTACTGTCTC
ACTCCTCCGGTGGATACGCCAATAACAAACAACGAGATAGTCATTCAATA
TCGATTAATAGTTGTTTGTTACTGGTTTTTCTTTTGTAATCACGTCAACG
AGTGCTGATTGAATGGCACGTGTCACAGATCACTGCTCGTCTTTCATACT
TAATGGACACTTTCTTTTTTCCTGTTTATGTAATCGAATTGCTTATAATT
AATTTAATCGCATTTCGGCGTTCTTTCAACATTTAGCTTATAACTTCTTG
TGTAGTACTCTATCATGTAGTATCAGTCGCATAACTACATCTGAAAAACC
GACTGAAGAGAATATTAGAACACCTCTATACACTATAAGCAGAATACGTA
TAAAGTAAACAAGTTGCAGCCGAGATAACTTTCGTTTGGACTGCATACAT
GTACTGTATTTCCTTGTTTCAAAGTTGATACAGTGAAACAAATATATTGT
GTAAAATACACAATACTCCAAGGACTCCTCATTCTGTCGGGGTCGAAATT
TCCTTGTACAGTGTAATTCACACATCCGAATAATATTTATATACATTACT
GCTGATCAAGCATACTGCGTCAAAAGTGTTTTTTGTCAAATGCTGAGCTT
ATGAGAAATTCAATATTTGCTTAGAGTGGTTTCGTACTAATCCTACAAAT
TTCCTTTTTCTATCATTTCAGATTTATTCCTGATTTTACGACATCAAGAG
TGACAAGAAATTTACGAGTATTAACCACCATGGGGCAAGCTTTAGATTTC
ACTTTACTGGCTACATTACCACACCACCTATTACCATTATGCGCCAGTGC
TCTACCACGCCCTTACTGGGAACCATACCTCCATATCGTGACAGCTATAG
TGATGTCAACCATTTTCATTTTTATAATTTTCTTTGCTTATTTTGACGCT
CAGAAGTATGTGGTTCAGTGTACGTTCACTGCTGGCGGTCTTTCGAACCG
AACACATGGAAAAGATAATATGGATATCTATACAGCTGGTACTGTATTTG
ATCTCAACGCAATCGCTGGCGTCAAAGTAAGGTAAGTCAATGGTTTTGAA
TTTTTTTTTGGTTTTGATCACTATGGATATGCCCCTGTATCACAGGCCCA
GCTTTTGACTCACTCCGCAATAGCAAAAATTTCTTGGTAGGAAAAGAGCC
TAAGCTCCCATCCCTATAGGGGAATTTGATAGAAGATATTGTTCTCCAAA
ACTAATTTCGATGGGAATCCTTAATCTCACTAAAGGTTTAGCTGAACCTG
TTTAGAAATCTGTTTGATTTACATGAACGTTGATACACGTTACCAAAGGA
TAATTTGAATTACCTGGTCCAAGTTAGAATAGACAAAGGTTTTGTATATG
TGTTAGAATGATAAGAGCTCACCTTCATTTTTGCGTTAATTTAAAGTGTA
TAGCATTGGTTTGTGTTCTCATTCACAGGATTACGGATAAAAAAGAAAAA
GCAAACAGCGAAGCAACGCTACATCATCGATCATCTGCAACCAACAAGGT
ACATCAACCTCTGACCAAAACAAATAGTAACCCTAAAGGATCACGGGAAC
AACTTGCTCGTGCTTCATCGAAAGAACGTAAAGGCTCGCTCTCCGATTGC
AGTACGTCATCACTCCCCTCGCGGAAGAACTCGGAAACAAACTCATCCGT
TCACGATGAAAAACCGGATACTAAAAACGGATTAAAAGAACCAAACACGC
CTCCCAAACGGAATAAGCGTAGACAAGAATCACACCGGCCGAACGGACGT
TACACCTTGTATCAAGAACCTACTGAACCGAAAATAGTGACGGAGGAGAT
TAGTGACCCATGGGAAAAGAGGAAGCTGAAAGAACTGGAAGATGAAAAGA
AGATCCGAAAGAAATCCAAACCAACGAAGAAAGATACACACGCTACACTT
CACAAAGAGAACAGTAATGGAAGTAGTGTCGAAGATGATCACCAAGAAGA
AAAACCTCACGGCTTTACGACCGTTGAAAAAGTGAAAAATCGAAAACGTA
TGGAATATTCTGGACATGGAACAATGGATAAATTAGATGAGATTTCTCTC
AACGGACCACGACCTGATGCGTACCCACGAAAAACGACTGCTCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007934-exon-sc0000080-1575043694:567649..568051 | TCONS_00007934-exon-sc0000080-1575043694:567649..568051 | Clytia hemisphaerica | exon |
| TCONS_00007934-exon-sc0000080-1575043694:566095..566454 | TCONS_00007934-exon-sc0000080-1575043694:566095..566454 | Clytia hemisphaerica | exon |
| TCONS_00007934-exon-sc0000080-1575043694:563056..563723 | TCONS_00007934-exon-sc0000080-1575043694:563056..563723 | Clytia hemisphaerica | exon |
| TCONS_00007934-exon-sc0000080-1510915933:567649..568051 | TCONS_00007934-exon-sc0000080-1510915933:567649..568051 | Clytia hemisphaerica | exon |
| TCONS_00007934-exon-sc0000080-1510915933:566095..566454 | TCONS_00007934-exon-sc0000080-1510915933:566095..566454 | Clytia hemisphaerica | exon |
| TCONS_00007934-exon-sc0000080-1510915933:563056..563723 | TCONS_00007934-exon-sc0000080-1510915933:563056..563723 | Clytia hemisphaerica | exon |
| TCONS_00007934-exon-sc0000080-1491911889:567649..568051 | TCONS_00007934-exon-sc0000080-1491911889:567649..568051 | Clytia hemisphaerica | exon |
| TCONS_00007934-exon-sc0000080-1491911889:566095..566454 | TCONS_00007934-exon-sc0000080-1491911889:566095..566454 | Clytia hemisphaerica | exon |
| TCONS_00007934-exon-sc0000080-1491911889:563056..563723 | TCONS_00007934-exon-sc0000080-1491911889:563056..563723 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:563056..568051 - |
Blast
BLAST of TCONS_00007934 vs. Swiss-Prot (Human)
Match: TM131 (Transmembrane protein 131 OS=Homo sapiens GN=TMEM131 PE=1 SV=3) HSP 1 Score: 119.013 bits (297), Expect = 3.048e-28 Identity = 80/199 (40.20%), Postives = 115/199 (57.79%), Query Frame = 3
Query: 174 LMFQLVCLLYVESTPKARVY-PSFTVKGSFTATNAGQLPVEVASMNINNYECEGYGFRILNCEPFMLMPNASRKIDITFIPDFTTSRVTRNLRVLTTMGQALDFXXXXXXXXXXXXXXXSALPRPYWEPYLHIVTAIVMSTXXXXXXXXAYFDAQK----YVVQCTFTAGGLSNRTHGKDNMDIYTAGTVFDLNAIAGV 755
L F++ L + T ++ P+FT+K +F N GQL + + ++ I+ Y CEGYGF+++NC+ F L NASR I I F PDFT SRV R L+ +TT G F L A+LP+H+L CA ALPRP WE L+I+ + +MS +F+ +I AY +AQ + + +F A SN + G FDL I G+
Sbjct: 990 LRFKITEALLKDCTDSLKLREPNFTLKRTFKVENTGQLQIHIETIEISGYSCEGYGFKVVNCQEFTLSANASRDIIILFTPDFTASRVIRELKFITTSGSEFVFILNASLPYHMLATCAEALPRPNWELALYIIISGIMSALFLLVIGTAYLEAQGIWEPFRRRLSFEA---SNPP--------FDVGRPFDLRRIVGI 1177
The following BLAST results are available for this feature:
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