TCONS_00007939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007939
Unique NameTCONS_00007939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007939 ID=TCONS_00007939|Name=TCONS_00007939|organism=Clytia hemisphaerica|type=transcript|length=495bp
ATTCCCAAGTTTTACTCAAATTatcacaattttttaaatctaaaaatatt
ttagttagATTTCAtgtaaatttaataaaaaaacagtcaaaataatgctg
aaatttattaaaattttcacatttaCTTTTACGCCCTTGTCaagaatcaa
tcaataaatcaaattgcattatgggcataGAATATTCACGCTCGAATGTA
AATGGTGCATCTTTTACTTCGGCTGACTACCGTAACTCAACATGGGTAAG
CCACGTGGAATTCGTGTTGCCCGTAAATTGAGAAACCACAGACGTGAACA
GAGATGGCACGATAAACAATACAAGAAGGCTCACTTGGGAACAGCATTAA
AGGCCAACCCTTTTGGTGGAGCTTCTCATGCTAAAGGAATTGTTTTAGAA
AAAGTGTAAGCTACTAATTGATGTTATTATGATAATTTCTAAGATTGTTT
TCAAATTGGAAATCAAAAGTTACTGATAATTTTTGGTTTCAAAGC
Run BLAST on NCBI

transcript from alignment at sc0000080:606587..607354-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007939 ID=TCONS_00007939|Name=TCONS_00007939|organism=Clytia hemisphaerica|type=transcript|length=768bp|location=Sequence derived from alignment at sc0000080:606587..607354- (Clytia hemisphaerica)
ATTCCCAAGTTTTACTCAAATTATCACAATTTTTTAAATCTAAAAATATT
TTAGTTAGATTTCATGTAAATTTAATAAAAAAACAGTCAAAATAATGCTG
AAATTTATTAAAATTTTCACATTTACTTTTACGCCCTTGTCAAGAATCAA
TCAATAAATCAAATTGCATTATGGGCATAGAATATTCACGCTCGAATGTA
AATGGTGCATCTTTTACTTCGGCTGACTACCGTAACTCAACATGGGTTAG
TAAGCTTCTACTTACCCTTCATTATTATTGGCTTGATTGAGTACTTTCAT
CCTTTCATAACATCTTTGGAGCCATTAAGGTGATATTGAAAACCACAGAC
AATTTTGATACAGTTTTATTACTATTGGAACACACGAAGAGAGGAACCAA
ATAGCCATACTAAAATGATTTTATGTAGTATAACCACTGGAAAACTTACT
GACTGGAATAATTTTGAGATCTGTCTAGGAGAATAAACTGACTTTGACTT
TCATTTCGTGAATTTTAGGTAAGCCACGTGGAATTCGTGTTGCCCGTAAA
TTGAGAAACCACAGACGTGAACAGAGATGGCACGATAAACAATACAAGAA
GGCTCACTTGGGAACAGCATTAAAGGCCAACCCTTTTGGTGGAGCTTCTC
ATGCTAAAGGAATTGTTTTAGAAAAAGTGTAAGCTACTAATTGATGTTAT
TATGATAATTTCTAAGATTGTTTTCAAATTGGAAATCAAAAGTTACTGAT
AATTTTTGGTTTCAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004477XLOC_004477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007939-exon-sc0000080-1575043694:607110..607354TCONS_00007939-exon-sc0000080-1575043694:607110..607354Clytia hemisphaericaexon
TCONS_00007939-exon-sc0000080-1575043694:606587..606836TCONS_00007939-exon-sc0000080-1575043694:606587..606836Clytia hemisphaericaexon
TCONS_00007939-exon-sc0000080-1510915933:607110..607354TCONS_00007939-exon-sc0000080-1510915933:607110..607354Clytia hemisphaericaexon
TCONS_00007939-exon-sc0000080-1510915933:606587..606836TCONS_00007939-exon-sc0000080-1510915933:606587..606836Clytia hemisphaericaexon
TCONS_00007939-exon-sc0000080-1491911889:607110..607354TCONS_00007939-exon-sc0000080-1491911889:607110..607354Clytia hemisphaericaexon
TCONS_00007939-exon-sc0000080-1491911889:606587..606836TCONS_00007939-exon-sc0000080-1491911889:606587..606836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:606587..607354 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1500.24	1494.9	1621.82	1881.99	370.036	334.841	453.571	549.746	1667.82	1536.68	1778.84	2115.28	2110.69	2077.08	2102.17	2011.79	2352.64	2298.28	1081.7	1109.42	2235.5	2102.7	1850.14	1713.99	667.789	617.381	2329.1	2305.42	1541.64	1661.03
Blast
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BLAST of TCONS_00007939 vs. Swiss-Prot (Human)
Match: RS23 (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 3.659e-28
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 2 
Query:  242 MGKPRGIRVARKLRNHRREQRWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKV 406
            MGK RG+R ARKLR+HRR+Q+WHDKQYKKAHLGTALKANPFGGASHAKGIVLEKV
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKV 55
The following BLAST results are available for this feature:
BLAST of TCONS_00007939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS233.659e-2889.0940S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
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