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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007947 ID=TCONS_00007947|Name=TCONS_00007947|organism=Clytia hemisphaerica|type=transcript|length=1167bp
TGGGAGTCGAATGAAAATTGTTCCAAGTGTCGTTAACGATGACCAAAGTT
ATAACCGGGATAGTTCTGATAGTTCCAAGCAATCCTTGAGCCTTGATcct
aaaacttttcaaaattgacgtcaattattgAAATCgcaactgacgtcaaa
taaattctcaaaatgttttttctctcATCTTGAATCATTTACTCTTGCTG
GTTTACTCGTATGCTAACAACATCTTCAAAATGGGTGCTCTATTATCATC
AAAATACGTCAAGAAATCTGACTATCAAGCTCACTTGGTACAAATCCAAG
GATTGTTGGAGGACCTTCAACTCGTCCAATCCAGCCTTgccaataaaaca
aaagaaaatggtGACAACTTCCAACAATTCGTCGAAGAATTACGCGAAAA
CCATTCCACACATagGAAGAAGATTCTGAGCGCCGAAGAGAAGATCATCA
CTTTGACGGAGAAAGTGAAAAAAGTGAACGAGCTGGACACAGTGAAGACC
GACCTTCAACAAGTCACCCTCGAACATCATGAAGATAGAACCAAACTTTC
TTCATATTTGAAAACTTTCGTCGAAAGTGAAAAACGGAAATGGAACGACG
ATCTGATGGATTTGAAGTCACGCATTGAGGGCATTCATAAATACACAGGA
GAACTTGTTGACCTTGATCTCCAACATGAACGAGAAATCAAAGAACTTCG
TAACATGATTAAACATTTAGGAAGCAAGCTAGTTGAACAACAAAATCAGG
CTAGTGCATCACCTGACCCAGCCTGTACCGACAAACCATCGGCAGCTGCG
GCGCTTTCCTCACCATCACTACCGGTGACAAGCAGTATCTTGAAACCGAG
TAAATTTCAAGTGACGCCCGTCGCCAAAGATTCCGCCTTCATGTCTCAAC
AACCGAGTCTGTTGTTGAATTCTGCTGCCAGCAGATCACATCGCTCGCAC
AGTGTTTTGTTGAACCAACCAAGTGTTCTGTTGAATAGCATTTGCAGTCA
TGAATGCACTTGCTCCCCTCCTACCCAACATGAAAATTTCTCCaagattt
ctttgaaaatgaaagaactgagGAGAAATATCAACCAGGAAGAGCTCAAG
AAAAAAGCTTCTTTCAAACTTATGTAATAAACCCACATCCTATGTTACCA
ATAAAGTATAATGATGC Run BLAST on NCBI protein sequence of TCONS_00007947-protein >TCONS_00007947-protein ID=TCONS_00007947-protein|Name=TCONS_00007947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MGALLSSKYVKKSDYQAHLVQIQGLLEDLQLVQSSLANKTKENGDNFQQF
VEELRENHSTHRKKILSAEEKIITLTEKVKKVNELDTVKTDLQQVTLEHH
EDRTKLSSYLKTFVESEKRKWNDDLMDLKSRIEGIHKYTGELVDLDLQHE
REIKELRNMIKHLGSKLVEQQNQASASPDPACTDKPSAAAALSSPSLPVT
SSILKPSKFQVTPVAKDSAFMSQQPSLLLNSAASRSHRSHSVLLNQPSVL
LNSICSHECTCSPPTQHENFSKISLKMKELRRNINQEELKKKASFKLM Run BLAST on NCBI transcript from alignment at sc0000080:664713..666353- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007947 ID=TCONS_00007947|Name=TCONS_00007947|organism=Clytia hemisphaerica|type=transcript|length=1641bp|location=Sequence derived from alignment at sc0000080:664713..666353- (Clytia hemisphaerica)
TGGGAGTCGAATGAAAATTGTTCCAAGTGTCGTTAACGATGACCAAAGTT
ATAACCGGGATAGTTCTGATAGTTCCAAGCAATCCTTGAGCCTTGATCCT
AAAACTTTTCAAAATTGACGTCAATTATTGAAATCGCAACTGACGTCAAA
TAAATTCTCAAAATGTTTTTTCTCTCATCTTGAATCATTTACTCTTGCTG
GTTTACTCGTATGCTAACAACATCTTCAAAATGGGTGCTCTATTATCATC
AAAATACGTCAAGAAATCTGACTATCAAGCTCACTTGGTACAAATCCAAG
GATTGTTGGAGGACCTTCAACTCGTCCAATCCAGCCTTGCCAATAAAACA
AAAGAAAATGGTGACAACTTCCAACAATTCGTCGAAGAATTACGCGAAAA
CCATTCCACACATGTAAGTATCAAACACGAGCCCCACTTTCCGTTTATTG
AAATAAATCTCACATTTACCCCCAGGATTTCCATTTCAATAAGTTAATTT
TAAGGTATATTTTTCTGGTTGAAGATCCAGTAGCACATTCAAAAGGTGTT
TTTTTGTTCTCATGGTGAGCTTATCGAAAATGAGACAGGGTTCTAAGTGT
GAATCGTGCGCAATGTACTCATTGTTTTTCTCTAACAGACATAAACTTCA
TAGAGAATCTTTTATGATGCTTGTCCCTGAATCAAAGCATCTTTTATATG
GTCATTTTTACAAGCTTTTACTATCACTGGTGTTTTTTTTCAGAGGAAGA
AGATTCTGAGCGCCGAAGAGAAGATCATCACTTTGACGGAGAAAGTGAAA
AAAGTGAACGAGCTGGACACAGTGAAGACCGACCTTCAACAAGTCACCCT
CGAACATCATGAAGATAGAACCAAACTTTCTTCATATTTGAAAACTTTCG
TCGAAAGTGAAAAACGGAAATGGAACGACGATCTGATGGATTTGAAGGTA
TAATCACTACATTTTTCTCCAAACTTTCTTTCTTTGCATCAAAGCTTTCC
AACATTAATTCACTAGATTTTTATTAGGGGTGTATAAAAGAAATATTGAA
TCTGTCATTTCATAATTCTATTGTTTTCCTCTTGATTTTAGTCACGCATT
GAGGGCATTCATAAATACACAGGAGAACTTGTTGACCTTGATCTCCAACA
TGAACGAGAAATCAAAGAACTTCGTAACATGATTAAACATTTAGGAAGCA
AGCTAGTTGAACAACAAAATCAGGCTAGTGCATCACCTGACCCAGCCTGT
ACCGACAAACCATCGGCAGCTGCGGCGCTTTCCTCACCATCACTACCGGT
GACAAGCAGTATCTTGAAACCGAGTAAATTTCAAGTGACGCCCGTCGCCA
AAGATTCCGCCTTCATGTCTCAACAACCGAGTCTGTTGTTGAATTCTGCT
GCCAGCAGATCACATCGCTCGCACAGTGTTTTGTTGAACCAACCAAGTGT
TCTGTTGAATAGCATTTGCAGTCATGAATGCACTTGCTCCCCTCCTACCC
AACATGAAAATTTCTCCAAGATTTCTTTGAAAATGAAAGAACTGAGGAGA
AATATCAACCAGGAAGAGCTCAAGAAAAAAGCTTCTTTCAAACTTATGTA
ATAAACCCACATCCTATGTTACCAATAAAGTATAATGATGC Coding sequence (CDS) from alignment at sc0000080:664713..666353- >TCONS_00007947 ID=TCONS_00007947|Name=TCONS_00007947|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at sc0000080:664713..666353- (Clytia hemisphaerica)
ATGGGTGCTCTATTATCATCAAAATACGTCAAGAAATCTGACTATCAAGC
TCACTTGGTACAAATCCAAGGATTGTTGGAGGACCTTCAACTCGTCCAAT
CCAGCCTTGCCAATAAAACAAAAGAAAATGGTGACAACTTCCAACAATTC
GTCGAAGAATTACGCGAAAACCATTCCACACATAGGAAGAAGATTCTGAG
CGCCGAAGAGAAGATCATCACTTTGACGGAGAAAGTGAAAAAAGTGAACG
AGCTGGACACAGTGAAGACCGACCTTCAACAAGTCACCCTCGAACATCAT
GAAGATAGAACCAAACTTTCTTCATATTTGAAAACTTTCGTCGAAAGTGA
AAAACGGAAATGGAACGACGATCTGATGGATTTGAAGTCACGCATTGAGG
GCATTCATAAATACACAGGAGAACTTGTTGACCTTGATCTCCAACATGAA
CGAGAAATCAAAGAACTTCGTAACATGATTAAACATTTAGGAAGCAAGCT
AGTTGAACAACAAAATCAGGCTAGTGCATCACCTGACCCAGCCTGTACCG
ACAAACCATCGGCAGCTGCGGCGCTTTCCTCACCATCACTACCGGTGACA
AGCAGTATCTTGAAACCGAGTAAATTTCAAGTGACGCCCGTCGCCAAAGA
TTCCGCCTTCATGTCTCAACAACCGAGTCTGTTGTTGAATTCTGCTGCCA
GCAGATCACATCGCTCGCACAGTGTTTTGTTGAACCAACCAAGTGTTCTG
TTGAATAGCATTTGCAGTCATGAATGCACTTGCTCCCCTCCTACCCAACA
TGAAAATTTCTCCAAGATTTCTTTGAAAATGAAAGAACTGAGGAGAAATA
TCAACCAGGAAGAGCTCAAGAAAAAAGCTTCTTTCAAACTTATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007947-exon-sc0000080-1575043694:665941..666353 | TCONS_00007947-exon-sc0000080-1575043694:665941..666353 | Clytia hemisphaerica | exon |
| TCONS_00007947-exon-sc0000080-1575043694:665407..665610 | TCONS_00007947-exon-sc0000080-1575043694:665407..665610 | Clytia hemisphaerica | exon |
| TCONS_00007947-exon-sc0000080-1575043694:664713..665262 | TCONS_00007947-exon-sc0000080-1575043694:664713..665262 | Clytia hemisphaerica | exon |
| TCONS_00007947-exon-sc0000080-1510915933:665941..666353 | TCONS_00007947-exon-sc0000080-1510915933:665941..666353 | Clytia hemisphaerica | exon |
| TCONS_00007947-exon-sc0000080-1510915933:665407..665610 | TCONS_00007947-exon-sc0000080-1510915933:665407..665610 | Clytia hemisphaerica | exon |
| TCONS_00007947-exon-sc0000080-1510915933:664713..665262 | TCONS_00007947-exon-sc0000080-1510915933:664713..665262 | Clytia hemisphaerica | exon |
| TCONS_00007947-exon-sc0000080-1491911889:665941..666353 | TCONS_00007947-exon-sc0000080-1491911889:665941..666353 | Clytia hemisphaerica | exon |
| TCONS_00007947-exon-sc0000080-1491911889:665407..665610 | TCONS_00007947-exon-sc0000080-1491911889:665407..665610 | Clytia hemisphaerica | exon |
| TCONS_00007947-exon-sc0000080-1491911889:664713..665262 | TCONS_00007947-exon-sc0000080-1491911889:664713..665262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:664713..666353 - |
Blast
The following BLAST results are available for this feature:
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