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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007963 ID=TCONS_00007963|Name=TCONS_00007963|organism=Clytia hemisphaerica|type=transcript|length=2823bp TAGAACCTAAGAAATCTGTCTAATTAGgatttttcctttcaaaacgTCTC GCCCCTCTTTGACATAATTTCCTGGCCATTAACTTaaaaccttatttatt ttttcagtgatgtaaaatttgaaaatcatgaaatataaaTAATAACAGAC AACACCATGAATGACAATTTCACCATGGAGACTAGAAAGGTTATACATGA AGGATTCTTGAAGAAGTCTCCACCtcaagcaaaaattgaaaaaggctTCA AGTGGCACAAGAGATATTTTCGACTATGTTCTGACAAAACACTGGAATAc tacaaagaaaagaaagaaaagaagccTTTAAAAGAACCTATCGATTTGAG AAATTGTCAAAATGTTGTACCTGACCCAAATGAAGAAGAATTCAAAATCA GTGGTGTAAAGTTTGGTGAGAAATGGCGTTGGTTCTTCAAACTTGAGACA CCTGAACGAACTTATCATTTCATCGCTTCCACTAAAAGTGACATGAATCA ATGGATCGAGAAAATTAACATGttgaatcaaaatcaatttacagaTTCAG ATGGAATAGAGCTACCTAACCGATCAAACTCATTATCAAGTGCTGTATCC ACAACAAGTAGTAGTTCTAATATGTCCTCTCCCGTTATGGTCAGGACCAG TCCAAGTTCTCGGAGACCATCAAACCAATCTGCATCAAGATCAAGAGCTA GTTCAGCTCATTCTCAAGAACATTATCGAGTACCAGGAATATCCAATAGA TTCAATACTACACCAGCATCTGAAATGTTCGCAAAGGTAACTGTTGAATT GCCTCGCACATTGATTTCCCATGCGCCAATCCAATCAGATGTTGGTACCA CCCCGGATGGATATGATATTTTAGATGTGGTCAATCAAACTGATCATGAA GATATTTATAAAGTTCCTATCAATAATACACCCTCCTCATCTTACTCCAT ACCACCCAATCGACCAGTACCTATTCCCAAACAATCAACCTCCAAACCGC CGCCACCACTTCCAAACCCAGCAACTAAACAAGCTCCAACACGAACACCT GATTTTGGAATGATAGGTTACGAAAAAATGGAtcccaaaaatgaaaaaca acaacaacaacagcatcaTCAAGATTCAGATTCTTATGAACTTTCTTATT ATCCTATGAGACCAAAGGATGAACTGCCATCTAGAACACACACAGGACCA AGTCCTGAAAAGAAATTCACAACAATGCCATGGATGCTAAGAGATACAAA TTCACAAAAATCTTCCTCTCTTCCACGCCATCATGTTGCGACACCGGATG TCCCACCAAAAAGAGAAGATCCATCCTTCTCTGAAATACCAAGTGTTACA CCTAAATCCCCTAATGATAGTGAAGACCCACCTCCTGTGCAGCGAGAAAC AAAGCCTAATTTGCCACCGCGTGTTGACCGTGCAAAGAAGCCGTCCTCTT CTACTTTACCACCACACTGGCGTCTGCAAGGGGAAGATAGTTTTGATGGT ATGCCTAAACCAAGTTATTATAATATTTATGACGATGATAATACAAACTC TGAGCCATTACTTGGCTATAACGAACTACCAAATCTGTCATCACGTCCTG ATCCTTACCAACAACACCAATTAACTAACAACAGCACGACTGCACTTAAC GATACAACTGTAACTCTTGACTCAGATGGTAATAAACTAACTGTTGATAA AATTGCACATATCAATATAAAAATCGCACCAGATAATACACGACCAGTAC CACCTACACCAGAACAAAACACTACATATGAGAATTCATCTTCTCCAGCA CGTAAAGTCTCCTCTGCATCAAACTCATCAAAAGTCTCATATGAGAATGA TGATGCTTTTGATGGGATcagttatgaaaattttaaggacAGGCCGAAGC GACCTTTGCTGTACTCTCCAGTTGAAGGCAATCGATACAACTCTCAATCT TCTGAAGAAGCCAGAGAAAGAGAGGTGGAGATCGAAGAATCCGAACCTGG TAGTGGTCACTACCTTATTGTTGATGTCACAGCCACCAAAGCTGTTGAAG GCGGTTTGGTTAACCGGGAAAGTCCTATAAATTGTGCCAGATGAGAGTAa aatgaaatttgttttgaatttaagTTACAGTTTTATTGGAAAAGGCTTTT ATTTAACATACCTTGATGAAGTGTCGATCATTTCAACAACAGACCTTTTG GCCTTTTTGTTCATATGTATTTTTACCTTATAATAATGCATACTACAGTA TTAAAAAATGATGTACTATaattctaaaaacattttttaccaATGATTTA CTTTGTTTTGTAATTTTATACCTTTTTTACTGAATtctataatttatttt tgtgtaaTGATTCATTTNAAAACATTTTTTACCAATGATTTACTTTGTTT TGTAATTTTATACCTTTTTTACTGAATtctataatttatttttgtgtaaT GATTCATTTTAATATAATCACTTTTCTATCAAACTTATTTTTGAGGATTT ATCTCTATTTTTGTAGTGATTTTTTATGGAATATAATCAAATTTATTTCg tattgttttgtatttttattgaaGTATTTTCAGTGTCTAAAACAAAACTA GAGTACCTCGATCGTGTCTCATGATAAGTTAGTTAAATTGAACCCTAAGG AAGGACCAGAAAAGACAGACCTGGTATGGGTCCAAGTTTTAATAACTTTA TATCCGTTTTCAcattatttttagaaattttctataaaaatatctTGTAC ATAGCTAACGTATTTTTTGTTCCTGTCAAAATATTATTATTGCAAATTTA ACAAATTGCGGGAAAAACTCAAA Run BLAST on NCBI protein sequence of TCONS_00007963-protein >TCONS_00007963-protein ID=TCONS_00007963-protein|Name=TCONS_00007963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=645bp
MNDNFTMETRKVIHEGFLKKSPPQAKIEKGFKWHKRYFRLCSDKTLEYYK EKKEKKPLKEPIDLRNCQNVVPDPNEEEFKISGVKFGEKWRWFFKLETPE RTYHFIASTKSDMNQWIEKINMLNQNQFTDSDGIELPNRSNSLSSAVSTT SSSSNMSSPVMVRTSPSSRRPSNQSASRSRASSAHSQEHYRVPGISNRFN TTPASEMFAKVTVELPRTLISHAPIQSDVGTTPDGYDILDVVNQTDHEDI YKVPINNTPSSSYSIPPNRPVPIPKQSTSKPPPPLPNPATKQAPTRTPDF GMIGYEKMDPKNEKQQQQQHHQDSDSYELSYYPMRPKDELPSRTHTGPSP EKKFTTMPWMLRDTNSQKSSSLPRHHVATPDVPPKREDPSFSEIPSVTPK SPNDSEDPPPVQRETKPNLPPRVDRAKKPSSSTLPPHWRLQGEDSFDGMP KPSYYNIYDDDNTNSEPLLGYNELPNLSSRPDPYQQHQLTNNSTTALNDT TVTLDSDGNKLTVDKIAHINIKIAPDNTRPVPPTPEQNTTYENSSSPARK VSSASNSSKVSYENDDAFDGISYENFKDRPKRPLLYSPVEGNRYNSQSSE EAREREVEIEESEPGSGHYLIVDVTATKAVEGGLVNRESPINCAR Run BLAST on NCBI transcript from alignment at sc0000080:709668..713741- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007963 ID=TCONS_00007963|Name=TCONS_00007963|organism=Clytia hemisphaerica|type=transcript|length=4074bp|location=Sequence derived from alignment at sc0000080:709668..713741- (Clytia hemisphaerica) TAGAACCTAAGAAATCTGTCTAATTAGGATTTTTCCTTTCAAAACGTCTC
GCCCCTCTTTGACATAATTTCCTGGCCATTAACTTAAAACCTTATTTATT
TTTTCAGTGATGTAAAATTTGAAAATCATGAAATATAAATAATAACAGAC
AACACCATGAATGACAATTTCACCATGGAGACTAGAAAGGTTATACATGA
AGGATTCTTGAAGAAGTCTCCACCTCAAGCAAAAATTGAAAAAGGCTTCA
AGGTAAGCAAGCTTATAAGCTCATATTTTTAAGTGATTGTTTACAAACAT
GAAAGTAGCTTAAAAATTGATTCTAAATTTCTTATTTCCCACTTTCTTTA
CTTATTTTTGGACGCCAATATAAGATGTCAAACTTGCTGTTCCAACTGTT
TTTAGGTTGTCCCTCACTTTTCTATCGATATCAGATAAATACTTGACTGC
CTTGCAATGCTGGTTTATGTTTCTTTTGTTCCAAATGGAAAATAATAAGT
ATATTAATATCACAATGATGATTATTTTCTAGTGGCACAAGAGATATTTT
CGACTATGTTCTGACAAAACACTGGAATACTACAAAGAAAAGAAAGAAAA
GAAGCCTTTAAAAGAACCTATCGATTTGAGAAATTGTCAAAATGTTGTAC
CTGACCCAAATGAAGAAGAATTCAAAATCAGTGGTGTAAAGTTTGGTGAG
AAATGGCGTTGGTTCTTCAAACTTGAGACACCTGAACGAACTTATCATTT
CATCGCTTCCACTAAAAGTGACATGAATCAATGGATCGAGAAAATTAACA
TGTTGAATCAAAATCAATTTACAGGTATCCTTAAATTATGGATTTCATGG
ACTTCTAACTAAATACACCCTTCCCTTATTCACTATTTGTCATATTCTTG
CCTCAAATAAAACTTTTTTATAAAACTTTTTTTCTTAAAATTTAGATTCA
GATGGAATAGAGCTACCTAACCGATCAAACTCATTATCAAGTGCTGTATC
CACAACAAGTAGTAGTTCTAATATGTCCTCTCCCGTTATGGTCAGGACCA
GTCCAAGTTCTCGGAGACCATCAAACCAATCTGCATCAAGATCAAGAGCT
AGTTCAGCTCATTCTCAAGAACATTATCGAGTACCAGGAATATCCAATAG
ATTCAATACTACACCAGCATCTGAAATGTTCGCAAAGGTAACTGTTGAAT
TGCCTCGCACATTGATTTCCCATGCGCCAATCCAATCAGATGTTGGTACC
ACCCCGGATGGATATGATATTTTAGATGTGGTCAATCAAACTGATCATGA
AGATATTTATAAAGTTCCTATCAATAATACACCCTCCTCATCTTACTCCA
TACCACCCAATCGACCAGTACCTATTCCCAAACAATCAACCTCCAAACCG
CCGCCACCACTTCCAAACCCAGCAACTAAACAAGCTCCAACACGAACACC
TGATTTTGGAATGATAGGTTACGAAAAAATGGATCCCAAAAATGAAAAAC
AACAACAACAACAGCATCATCAAGATTCAGATTCTTATGAACTTTCTTAT
TATCCTATGAGACCAAAGGATGAACTGCCATCTAGAACACACACAGGACC
AAGTCCTGAAAAGAAATTCACAACAATGCCATGGATGCTAAGAGATACAA
ATTCACAAAAATCTTCCTCTCTTCCACGCCATCATGTTGCGACACCGGAT
GTCCCACCAAAAAGAGAAGATCCATCCTTCTCTGAAATACCAAGTGTTAC
ACCTAAATCCCCTAATGATAGTGAAGGTATCAAATCTTGGGATCTAACAG
CTGATAGTACTTTATCTTCCCTAGATTACTTATGGAAAGCTATAATTCTC
CTTTTTTCCCAAGTTAACTATTCAAGCTTTAAAGAAATCCATCATTTTCC
CTACAATCCATTATAACTTAATATATTTCTTTCATTTCTTAAACTGGAAT
TGCTAGTCCTTCAGTAATCAATACTTTAGATTCTATTCTACTCTCTATTT
TTGAAGTAAAATAATCCCTTTAAGAATTCTAAACGTTCTTTGTTTGTCAT
TACAGACCCACCTCCTGTGCAGCGAGAAACAAAGCCTAATTTGCCACCGC
GTGTTGACCGTGCAAAGAAGCCGTCCTCTTCTACTTTACCACCACACTGG
CGTCTGCAAGGGGAAGATAGTTTTGATGGTATGCCTAAACCAAGTTATTA
TAATATTTATGACGATGATAATACAAACTCTGAGCCATTACTTGGCTATA
ACGAACTACCAAATCTGTCATCACGTCCTGATCCTTACCAACAACACCAA
TTAACTAACAACAGCACGACTGCACTTAACGATACAACTGTAACTCTTGA
CTCAGATGGTAATAAACTAACTGTTGATAAAATTGCACATATCAATATAA
AAATCGCACCAGATAATACACGACCAGTACCACCTACACCAGAACAAAAC
ACTACATATGAGAATTCATCTTCTCCAGCACGTAAAGTCTCCTCTGCATC
AAACTCATCAAAAGTCTCATATGAGAATGATGATGCTTTTGATGGGATCA
GTTATGAAAATTTTAAGGACAGGGTAAGCATGAAATGAATGTTTTAGGAT
GTTGAGTATGTCAGTGTGTCTTTATTCTTTGATTTCACTGATGATTGGTG
CCTGAGGACTATGAAACTCTGAGTTTGAAACATAGATATTGTGTCAACTC
TTTATTATATATTCATCCGTTCAAAATATGCACCACCGCTGCAATGTCTT
CTGACATTTCGTTACTATTAAGAAAGCTGCAAGTGGTGTATTGACTAGAA
ACAACAGAATAGTTTCCAGAGGGCATTACAATGGTGCATATTTTGAATCC
TACAGGATGAGACGACTGGGTCCAACCATCAGATTATCAGTGATAAAAAC
CTACAACTGTAGGCTAGGCTTTGAATGTATTATGAAATACTCCATATGAA
ATGCAAGGCTCGTATCATTGCTATTTTCATAGATTGTTATCAATCGCATG
TTTTTGTAAGAAGCTTAAAACTAATCTTTGTAGTCTTTATTTTTTGTAGT
AAAACCTGGTAAAACAATGAATCATTACCCATTCTCCATAGAAGTTATAG
TGGTCGAAAGTTTGATGATTATTTCTTGAATTGTTTGGTTATAGCCGAAG
CGACCTTTGCTGTACTCTCCAGTTGAAGGCAATCGATACAACTCTCAATC
TTCTGAAGAAGCCAGAGAAAGAGAGGTGGAGATCGAAGAATCCGAACCTG
GTAGTGGTCACTACCTTATTGTTGATGTCACAGCCACCAAAGCTGTTGAA
GGCGGTTTGGTTAACCGGGAAAGTCCTATAAATTGTGCCAGATGAGAGTA
AAATGAAATTTGTTTTGAATTTAAGTTACAGTTTTATTGGAAAAGGCTTT
TATTTAACATACCTTGATGAAGTGTCGATCATTTCAACAACAGACCTTTT
GGCCTTTTTGTTCATATGTATTTTTACCTTATAATAATGCATACTACAGT
ATTAAAAAATGATGTACTATAATTCTAAAAACATTTTTTACCAATGATTT
ACTTTGTTTTGTAATTTTATACCTTTTTTACTGAATTCTATAATTTATTT
TTGTGTAATGATTCATTTNAAAACATTTTTTACCAATGATTTACTTTGTT
TTGTAATTTTATACCTTTTTTACTGAATTCTATAATTTATTTTTGTGTAA
TGATTCATTTTAATATAATCACTTTTCTATCAAACTTATTTTTGAGGATT
TATCTCTATTTTTGTAGTGATTTTTTATGGAATATAATCAAATTTATTTC
GTATTGTTTTGTATTTTTATTGAAGTATTTTCAGTGTCTAAAACAAAACT
AGAGTACCTCGATCGTGTCTCATGATAAGTTAGTTAAATTGAACCCTAAG
GAAGGACCAGAAAAGACAGACCTGGTATGGGTCCAAGTTTTAATAACTTT
ATATCCGTTTTCACATTATTTTTAGAAATTTTCTATAAAAATATCTTGTA
CATAGCTAACGTATTTTTTGTTCCTGTCAAAATATTATTATTGCAAATTT
AACAAATTGCGGGAAAAACTCAAA Coding sequence (CDS) from alignment at sc0000080:709668..713741- >TCONS_00007963 ID=TCONS_00007963|Name=TCONS_00007963|organism=Clytia hemisphaerica|type=CDS|length=1938bp|location=Sequence derived from alignment at sc0000080:709668..713741- (Clytia hemisphaerica) ATGAATGACAATTTCACCATGGAGACTAGAAAGGTTATACATGAAGGATT CTTGAAGAAGTCTCCACCTCAAGCAAAAATTGAAAAAGGCTTCAAGTGGC ACAAGAGATATTTTCGACTATGTTCTGACAAAACACTGGAATACTACAAA GAAAAGAAAGAAAAGAAGCCTTTAAAAGAACCTATCGATTTGAGAAATTG TCAAAATGTTGTACCTGACCCAAATGAAGAAGAATTCAAAATCAGTGGTG TAAAGTTTGGTGAGAAATGGCGTTGGTTCTTCAAACTTGAGACACCTGAA CGAACTTATCATTTCATCGCTTCCACTAAAAGTGACATGAATCAATGGAT CGAGAAAATTAACATGTTGAATCAAAATCAATTTACAGATTCAGATGGAA TAGAGCTACCTAACCGATCAAACTCATTATCAAGTGCTGTATCCACAACA AGTAGTAGTTCTAATATGTCCTCTCCCGTTATGGTCAGGACCAGTCCAAG TTCTCGGAGACCATCAAACCAATCTGCATCAAGATCAAGAGCTAGTTCAG CTCATTCTCAAGAACATTATCGAGTACCAGGAATATCCAATAGATTCAAT ACTACACCAGCATCTGAAATGTTCGCAAAGGTAACTGTTGAATTGCCTCG CACATTGATTTCCCATGCGCCAATCCAATCAGATGTTGGTACCACCCCGG ATGGATATGATATTTTAGATGTGGTCAATCAAACTGATCATGAAGATATT TATAAAGTTCCTATCAATAATACACCCTCCTCATCTTACTCCATACCACC CAATCGACCAGTACCTATTCCCAAACAATCAACCTCCAAACCGCCGCCAC CACTTCCAAACCCAGCAACTAAACAAGCTCCAACACGAACACCTGATTTT GGAATGATAGGTTACGAAAAAATGGATCCCAAAAATGAAAAACAACAACA ACAACAGCATCATCAAGATTCAGATTCTTATGAACTTTCTTATTATCCTA TGAGACCAAAGGATGAACTGCCATCTAGAACACACACAGGACCAAGTCCT GAAAAGAAATTCACAACAATGCCATGGATGCTAAGAGATACAAATTCACA AAAATCTTCCTCTCTTCCACGCCATCATGTTGCGACACCGGATGTCCCAC CAAAAAGAGAAGATCCATCCTTCTCTGAAATACCAAGTGTTACACCTAAA TCCCCTAATGATAGTGAAGACCCACCTCCTGTGCAGCGAGAAACAAAGCC TAATTTGCCACCGCGTGTTGACCGTGCAAAGAAGCCGTCCTCTTCTACTT TACCACCACACTGGCGTCTGCAAGGGGAAGATAGTTTTGATGGTATGCCT AAACCAAGTTATTATAATATTTATGACGATGATAATACAAACTCTGAGCC ATTACTTGGCTATAACGAACTACCAAATCTGTCATCACGTCCTGATCCTT ACCAACAACACCAATTAACTAACAACAGCACGACTGCACTTAACGATACA ACTGTAACTCTTGACTCAGATGGTAATAAACTAACTGTTGATAAAATTGC ACATATCAATATAAAAATCGCACCAGATAATACACGACCAGTACCACCTA CACCAGAACAAAACACTACATATGAGAATTCATCTTCTCCAGCACGTAAA GTCTCCTCTGCATCAAACTCATCAAAAGTCTCATATGAGAATGATGATGC TTTTGATGGGATCAGTTATGAAAATTTTAAGGACAGGCCGAAGCGACCTT TGCTGTACTCTCCAGTTGAAGGCAATCGATACAACTCTCAATCTTCTGAA GAAGCCAGAGAAAGAGAGGTGGAGATCGAAGAATCCGAACCTGGTAGTGG TCACTACCTTATTGTTGATGTCACAGCCACCAAAGCTGTTGAAGGCGGTT TGGTTAACCGGGAAAGTCCTATAAATTGTGCCAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007963-exon-sc0000080-1575043694:713490..713741 | TCONS_00007963-exon-sc0000080-1575043694:713490..713741 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1575043694:712918..713209 | TCONS_00007963-exon-sc0000080-1575043694:712918..713209 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1575043694:711966..712796 | TCONS_00007963-exon-sc0000080-1575043694:711966..712796 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1575043694:711169..711686 | TCONS_00007963-exon-sc0000080-1575043694:711169..711686 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1575043694:709668..710597 | TCONS_00007963-exon-sc0000080-1575043694:709668..710597 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1510915933:713490..713741 | TCONS_00007963-exon-sc0000080-1510915933:713490..713741 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1510915933:712918..713209 | TCONS_00007963-exon-sc0000080-1510915933:712918..713209 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1510915933:711966..712796 | TCONS_00007963-exon-sc0000080-1510915933:711966..712796 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1510915933:711169..711686 | TCONS_00007963-exon-sc0000080-1510915933:711169..711686 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1510915933:709668..710597 | TCONS_00007963-exon-sc0000080-1510915933:709668..710597 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1491911889:713490..713741 | TCONS_00007963-exon-sc0000080-1491911889:713490..713741 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1491911889:712918..713209 | TCONS_00007963-exon-sc0000080-1491911889:712918..713209 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1491911889:711966..712796 | TCONS_00007963-exon-sc0000080-1491911889:711966..712796 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1491911889:711169..711686 | TCONS_00007963-exon-sc0000080-1491911889:711169..711686 | Clytia hemisphaerica | exon |
TCONS_00007963-exon-sc0000080-1491911889:709668..710597 | TCONS_00007963-exon-sc0000080-1491911889:709668..710597 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000080 | supercontig | sc0000080:709668..713741 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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