TCONS_00007972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007972
Unique NameTCONS_00007972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007972 ID=TCONS_00007972|Name=TCONS_00007972|organism=Clytia hemisphaerica|type=transcript|length=299bp
CTACAGTTAGTAACAGAACACTGAACAGGTACTACATTTGTTCGAggtaa
ggaaatttcgagttatcgagtaaggtttataaggcattgttaactgaaaa
gAAAACTGTATTGTTCTAATTGCAAATTTAAATTCCCTTAGAATTAATta
atgtgacgtcattttaacacaaaatttaAAGCAATTTATTGTACATAGAA
TATTACTCTCTTTGCAAAACGTTAAAACGaagattttatatattttttta
aataattttgcaaaagagaaaaaaaaagcttCTCTTTAACGAATGTTAC
Run BLAST on NCBI

transcript from alignment at sc0000080:343185..343483

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007972 ID=TCONS_00007972|Name=TCONS_00007972|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at sc0000080:343185..343483 (Clytia hemisphaerica)
GTAACATTCGTTAAAGAGaagctttttttttctcttttgcaaaattattt
aaaaaaatatataaaatcttCGTTTTAACGTTTTGCAAAGAGAGTAATAT
TCTATGTACAATAAATTGCTTtaaattttgtgttaaaatgacgtcacatt
aATTAATTCTAAGGGAATTTAAATTTGCAATTAGAACAATACAGTTTTct
tttcagttaacaatgccttataaaccttactcgataactcgaaatttcct
taccTCGAACAAATGTAGTACCTGTTCAGTGTTCTGTTACTAACTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004492XLOC_004492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007972-exon-sc0000080-1491911889:343185..343483TCONS_00007972-exon-sc0000080-1491911889:343185..343483Clytia hemisphaericaexon
TCONS_00007972-exon-sc0000080-1510915933:343185..343483TCONS_00007972-exon-sc0000080-1510915933:343185..343483Clytia hemisphaericaexon
TCONS_00007972-exon-sc0000080-1575043694:343185..343483TCONS_00007972-exon-sc0000080-1575043694:343185..343483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:343185..343483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.445637	0	0.530772	0.419423	1.51805	0.473726	1.32667	3.28658	0.398755	5.57858	0.523522	2.44657	0.446982	0.23984	1.18185	1.21136	2.51034	2.18907	1.9027	4.45475	0.451277	0.820553	0.422575	0	2.15873	5.75965	3.05794	0.44508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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