|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008018 ID=TCONS_00008018|Name=TCONS_00008018|organism=Clytia hemisphaerica|type=transcript|length=545bp
GTTCATACAAAAAAACATCAACACCTGATAAACTAGGAGCATTTAACTGT
CAAACAATCTATGATCAACCAAAGTGACTTTTGTACTAAAGTACCAAAAA
TCTGATTGCCAGATGCAAACTACTTAAAAGGAGAATACAATCAATTCTTG
GCTATCATTGGCTAAATGGGATACTTGAGAATGAGACAGAAAATTGTAGC
ACGTAAAGCCATTACTCCACCTGCTGACGAATTTGAAGATGAGGAGAACG
AGGAAGGAGGAGAGCCAGACCTCCACCAGTGTGGACATTGTCGACAAATG
TTTTTTAACTTCACCAAATACATCACACACAAATTACAAAAAGCCTGTTG
GAACAGTGACGAACAACCTACACCCACAAATGAGGACGAGGAGGGCGAGA
CACCGCCCTGGCCGCCCTCTGCAGCTGCAGGCAAAGATGGGAACGGAATC
GCCTCGCCACCCGGCGATGAATCAGGGGTTATTGAAGATACGGAGGATAT
GGAGACAGAGGTGACTGTGAGTGCTTTTTTTAGCTTGAATATGGA Run BLAST on NCBI transcript from alignment at sc0000081:708815..712121+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008018 ID=TCONS_00008018|Name=TCONS_00008018|organism=Clytia hemisphaerica|type=transcript|length=3307bp|location=Sequence derived from alignment at sc0000081:708815..712121+ (Clytia hemisphaerica)
GTTCATACAAAAAAACATCAACACCTGATAAACTAGGAGCATTTAACTGT
CAAACAATCTATGATCAACCAAAGTGACTTTTGTACTAAAGTACCAAAAA
TCTGATTGCCAGATGCAAACTACTTAAAAGGAGAATACAATCAATTCTTG
GCTATCATTGGCTAAATGGGATACTTGAGAATGAGACAGAAAATTGTAGC
ACGTAAAGCCATTACTCCACCTGCTGACGAATTTGAAGGTAAGTTTGACC
ATGGTTAAATACTATCATTTGAAGATCAATAAGAAGAATAGGTCTACTAT
TACTTGTTGGATGTAGTCTTAATTTGGAATTACTAAATTTTCGATGATTG
TTTTTATGGCCTTCTACATCGGTGCTATTGATATCTAAATGTTGATAACC
CTCGGGAATTcagtttaaaaagaaatacgGAAGAGAGGATACCAGGGACA
CATATTTCTTCTTGATTTGAAAAAGTATGGGAAATCCTGTTATATAAAGA
ACTCTACCATTTTTATAGATATTGGACTCATTCTAAAAGGAATTTAAAGT
GTTTTAGTGTCAGGACGAAATTACTTGTTACCCTTGTAATTTGATTGCTG
GTATTTTTCTATAAACTCTTATTATTATTAGGTTAGTTTAATTATGATAA
TTAGTAAGTCAAAAAGGTTGAATCCCTGATaataaagtatttttttctat
aCGATTCTTTGATCCATCTGTAGATTTTTAAGTCTTTTATCTAAGGCGCC
TTAAAATGCCTGTTATCCGATTTACTTGGCTGTCAAAAGGCCAAATAAAT
CGGCACAGGATACAGCATCCAATTAGAGTAATTAGTAGTTAATGAGGCAC
CTTTTGAAATTCACTTAATCTCGTATCCTGATCTGCCCTTTGAAAATCGA
TttatgtttgttttgttttttcagatAGCCTGATTTTAAGTCTCAAGGGG
TCTTTTTACCGGGGCAGGGGAAGGGATAAAGatttcgctttcgctttcga
atatttttactttcatGTTTCCTTTTGTGAAATTAGCCCATCATCGAAAA
TGAATCATCGTGAAGATGAATTCCCAAAGTTAATTTTCTCCGAAGTGTAA
TATGGGTTTGGCTTTGTCAACCAAAGGCTCATATCTCGACTTATTAGGGC
AAGTCAATCAGACGTTAGGGTGGCAAGCAGAGATAACGCTTAAGAAACGA
AATATAGAGTAAAATAGATTCCCCTGAATTAACAGTGTTCTACATCTGCA
TATTATTTGAACGTCATTTTCCTGCTTGGCATTAAACAGGCAGTAATGTT
CTCTAAAGAGTTCGTTGATTTATTGCAAATGCAAAAAAATGAATGTCCTA
CGGCGACCTGGGAAACGACAAGGTGCTTGAAaccacaaaaagaaaaatct
aatAAACGAGAGGtgattaaattttgcaaattaCATCGTTTTTCTATTTG
GTACAAGCTGATTAAGTGGTTAAGATGTAATTGGATCTACTCTAACATGA
CATTCTGTGCCAGGGggtaatgaaaaaaatttgtttggaagatacaagaa
aaacagtttttgtttgaattcaaAAGAGATTATGTCCGAGTATAGAGTTT
AATTAACAAAATTAAATCTTGGAAGCATTTGAGGAGGCCCTACTAATCgt
tatttcttttgaaagggCTAAAATACCTTGATTAATTAATCGAATTATTA
AAATGTAGAGCTCGTTGATATTGCTatataattaataaaaatatgGCTTC
CTTTTtgaatcaaaatggtagctttTAATGCTCTCTCAGCAGTCCCCCTA
AGCGTTTTCCTGTTTGGATGTGAAACTCTTAAAATCCATTCTGGCACAAT
TTCTAACAACATGAGCGACcattcaaaagaatttttcttcaaaatggaGA
CTGACCTAGAATGGCGAAATTCTAAACACAGCATGACCTAGTATATAAAG
CCTTTATAACTGTTGAGTGCCTCCGGAAGGAAAAGCTTGACTCTGATCCA
AAGAGCAAATCCTTTTAGAATCAAACCAATCACAAGCGATGGTTTACTAC
GGTAATACAAGGTAGAATGGAAATAGAAACTGAGTCAGTTGAACTCGGAT
TCGATTGTCGTTTTcaataatgggctcttccagaaaaaaaccattcatgg
gggaggggggggctggaggatatattgtccccctttgaaaaaaccctgaa
aaactgccatggGGTGAATCTgcgatgtccaggggtaaatattTGTGTCC
AGGGGGGTCAATTTGATGCTTATCCAGGGGCAAaacgtgtccagggggtg
aaaaatcgaaatgtccagggggtagaTCACAGACAAAATAACATATTCTC
CACCCCCATGAACGAATTCTTTCTGGAAGGGCCCAATTCTGAGTAAAATA
CACtcattttttgataagcatacgggaaaatcgggTCGATGCTTaggaaa
atctcattttcagccataatttatgcttatttatatgcttagacTTTAAT
TTCTTGCTTTTCTTTGGGTTCatgataatttcaaattttatagtCGGAAC
ATTGATTTGGTTCAAAAAAGtaagttttctttgtaatttggtGTCGCAGG
CAAAAACctttggtctaagaaagctaaaacagccttaaaagtaaccctaa
aaaggtcagcgttttagaaaagctgcatGCTTTTTACCGAAattgagcct
aagtatgctttataaacgttatgcttataaaaagaaaagagtgTAGACCA
TTAAATTTCAACTGAATGAACAATTTAATAACACATCagaaatagaaatt
caaatttgagaACTAACAGTTTCACCTTTGCAGAATCATCAGCGAAAAAA
ACTTGCACTTAAAAATTTGAGGCTTAAAGCCCAAAAAGTCATCCGAAGAC
TTGAGACCTTTGACGTTCTCATAGAaggaaaaatgtataaaaaggCAAAA
CAAACACTCCTTAAGGTGAAGcgtaaatctttaatttttctttgcttCAG
ATGAGGAGAACGAGGAAGGAGGAGAGCCAGACCTCCACCAGTGTGGACAT
TGTCGACAAATGTTTTTTAACTTCACCAAATACATCACACACAAATTACA
AAAAGCCTGTTGGAACAGTGACGAACAACCTACACCCACAAATGAGGACG
AGGAGGGCGAGACACCGCCCTGGCCGCCCTCTGCAGCTGCAGGCAAAGAT
GGGAACGGAATCGCCTCGCCACCCGGCGATGAATCAGGGGTTATTGAAGA
TACGGAGGATATGGAGACAGAGGTGACTGTGAGTGCTTTTTTTAGCTTGA
ATATGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008018-exon-sc0000081-1491911889:708815..709052 | TCONS_00008018-exon-sc0000081-1491911889:708815..709052 | Clytia hemisphaerica | exon |
| TCONS_00008018-exon-sc0000081-1510915933:708815..709052 | TCONS_00008018-exon-sc0000081-1510915933:708815..709052 | Clytia hemisphaerica | exon |
| TCONS_00008018-exon-sc0000081-1575043694:708815..709052 | TCONS_00008018-exon-sc0000081-1575043694:708815..709052 | Clytia hemisphaerica | exon |
| TCONS_00008018-exon-sc0000081-1491911889:711815..712121 | TCONS_00008018-exon-sc0000081-1491911889:711815..712121 | Clytia hemisphaerica | exon |
| TCONS_00008018-exon-sc0000081-1510915933:711815..712121 | TCONS_00008018-exon-sc0000081-1510915933:711815..712121 | Clytia hemisphaerica | exon |
| TCONS_00008018-exon-sc0000081-1575043694:711815..712121 | TCONS_00008018-exon-sc0000081-1575043694:711815..712121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000081 | supercontig | sc0000081:708815..712121 + |
Blast
The following BLAST results are available for this feature:
|
