TCONS_00008035 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008035
Unique NameTCONS_00008035
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008035 ID=TCONS_00008035|Name=TCONS_00008035|organism=Clytia hemisphaerica|type=transcript|length=392bp
AATTATTACAAGATTTCTGTTCTATAAGGTTTCAGGTTATGGCTAAAAGT
TGACGCGTGGGTATGtttgaaaaatatacaaaaaaaattgtgtacatGAT
TTAAATATTATAAAGGAATTAATACGACAATGTGTGCGAAAGAATGATAT
AAATTTGATACACTAAATGACTAAATCTGGTTCTAAATGGACCATGTGGA
GAGAAAGATTCTTAGTTGGGGATCAAGGAAGTGATATCCCCTTTGTTCAT
CAATTCTTTCTCCATACGGACCAAAAGGCCGACACCATCCACGACTAATT
GGACAAGTGCGACTTCGGAAAATCCCAAACGATCAGCATTAGAGATATCG
AAAGTACCGCCTTCAGCTGCAGTATCAACACCTCCGGTTCCT
Run BLAST on NCBI

transcript from alignment at sc0000081:312750..313206-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008035 ID=TCONS_00008035|Name=TCONS_00008035|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at sc0000081:312750..313206- (Clytia hemisphaerica)
AATTATTACAAGATTTCTGTTCTATAAGGTTTCAGGTTATGGCTAAAAGT
TGACGCGTGGGTATGTTTGAAAAATATACAAAAAAAATTGTGTACATGAT
ANATGGCTAAAAGTTAACGCGTGGGTATGTTTGAAAAATATACAAAAAAA
AATTGTGTACATGATTTAAATATTATAAAGGAATTAATACGACAATGTGT
GCGAAAGAATGATATAAATTTGATACACTAAATGACTAAATCTGGTTCTA
AATGGACCATGTGGAGAGAAAGATTCTTAGTTGGGGATCAAGGAAGTGAT
ATCCCCTTTGTTCATCAATTCTTTCTCCATACGGACCAAAAGGCCGACAC
CATCCACGACTAATTGGACAAGTGCGACTTCGGAAAATCCCAAACGATCA
GCATTAGAGATATCGAAAGTACCGCCTTCAGCTGCAGTATCAACACCTCC
GGTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004525XLOC_004525Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008035-exon-sc0000081-1575043694:313112..313206TCONS_00008035-exon-sc0000081-1575043694:313112..313206Clytia hemisphaericaexon
TCONS_00008035-exon-sc0000081-1575043694:312750..313046TCONS_00008035-exon-sc0000081-1575043694:312750..313046Clytia hemisphaericaexon
TCONS_00008035-exon-sc0000081-1510915933:313112..313206TCONS_00008035-exon-sc0000081-1510915933:313112..313206Clytia hemisphaericaexon
TCONS_00008035-exon-sc0000081-1510915933:312750..313046TCONS_00008035-exon-sc0000081-1510915933:312750..313046Clytia hemisphaericaexon
TCONS_00008035-exon-sc0000081-1491911889:313112..313206TCONS_00008035-exon-sc0000081-1491911889:313112..313206Clytia hemisphaericaexon
TCONS_00008035-exon-sc0000081-1491911889:312750..313046TCONS_00008035-exon-sc0000081-1491911889:312750..313046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:312750..313206 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.233003	0.456331	0.342864	0	4.10837	1.09472	2.52788	0	102.416	159.54	291.037	239.829	56.9879	46.3473	0.352476	0.520246	0.908109	2.26465	111.342	36.3245	15.7515	16.1964	12.8016	14.9968	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top