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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008053 ID=TCONS_00008053|Name=TCONS_00008053|organism=Clytia hemisphaerica|type=transcript|length=957bp
TAAAAACATAGATTTTCCTGGTTGGTTTAAAATATGTTCGTTGATTTATC
GTATATAAAGCATACAGCGATTTCGGAAAAGTCACTTTAATTCGAAATTT
GACTTGAATTAAAACACGAGCAAGTTAGACACAACAACAAAGAAATTCAC
ATATCAGGCAGTAGCTAAAaagttaaattatttttatcaacaAGAAGTCA
CAAGGAAAAACACAcgatttttgaaacatttttttaatccAACGTAATAC
TTTCGATAACTAAAATTTTTGGAAACCATTAAATTATGAATCGTTATGAT
ATCGTGTTATTGGCAACTTTAACCATCTTTTATTCAATGGTGCTAGAAAA
TGCGACAGCGAAATCAGGATGCGGTTTTCGATGGCGGATACCGTGTCCAT
CTGATGGCAAGAAGAGAAGCATGATGGCTGCGTCGAAGAAAAACATGGAT
CACAAATATGACTTAAATCAAATCGAGAACGATATCCTGGCAGAAGTCAT
GCATGAAAACCACCTTAATGATGTCGAAGATGGCCCTTCAAGAGATAACC
TTTACACAGAAAAGAACATTCGACATCGGGCGAGTTTAGATTTATCGAAT
AAGCGAGACAAGCAACAACAAACGGCAGATGAGTTATCGAGGCTACACAA
AATGGGAGCTAAGCTGCTAGAAAGTTATTATGACGAAATGAAAAGAGGAA
CGTccgaaaaatttgatgacgatgatgatatGGATGAAATcaacttttga
tttcaaaaaatgacttTTAGACTTGTGAATTTATGATAAATAGATTGACG
AAGACTGAACtctataaaaaaatacaaatatgtaGAGTAGAATAGAAATG
TATGTTAGAATTTGCTCGATTATAACGCTataattttaaatggaaaatat
ttttacgaATCAAAACCAAATTAAAATAAAGATTGTTGCAGATTGacaat
ttaaaat Run BLAST on NCBI protein sequence of TCONS_00008053-protein >TCONS_00008053-protein ID=TCONS_00008053-protein|Name=TCONS_00008053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MNRYDIVLLATLTIFYSMVLENATAKSGCGFRWRIPCPSDGKKRSMMAAS
KKNMDHKYDLNQIENDILAEVMHENHLNDVEDGPSRDNLYTEKNIRHRAS
LDLSNKRDKQQQTADELSRLHKMGAKLLESYYDEMKRGTSEKFDDDDDMD
EINF Run BLAST on NCBI transcript from alignment at sc0000081:618813..622263- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008053 ID=TCONS_00008053|Name=TCONS_00008053|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at sc0000081:618813..622263- (Clytia hemisphaerica)
TAAAAACATAGATTTTCCTGGTTGGTTTAAAATATGTTCGTTGATTTATC
GTATATAAAGCATACAGCGATTTCGGAAAAGTCACTTTAATTCGAAATTT
GACTTGAATTAAAACACGAGCAAGTTAGACACAACAACAAAGAAATTCAC
ATATCAGGCAGTAGCTAAAAAGTTAAATTATTTTTATCAACAAGAAGTCA
CAAGGAAAAACACACGATTTTTGAAACATTTTTTTAATCCAACGTAATAC
TTTCGATAACTAAAATTTTTGGAAACCATTAAATTATGAATCGTTATGAT
ATCGTGTTATTGGCAACTTTAACCATCTTTTATTCAATGGTGCTAGAAAA
TGCGACAGCGAAATCAGGATGCGGTTTTCGATGGCGGATACCGTGTCCAT
CTGATGGCAAGAAGAGAAGCATGGTAGGTTGGTTTTAAATGATCTCTGAG
CAGATTCTGATACTCCCCACATGGCACGTTTTCACTTTAAAGGCCATGGC
TCCGTAAGAGAATCTGCCCAGGTTGTCGCACTGCTTTGATCTTTTTCAAC
CAGATTTGGGATTAAATGAGCTTTTAAGCGCGATGATTGGCCAAAATAAA
ACAAACGCACAAAAACCAAAAGCCAATCATAATCATAAACATTAAAACCC
AGTCGCTTTCGTTTTCAAATTTTCAAAGGGAAAAGTCAACGCAGTTTTGA
ATGTTTTGGCTGAGCAACCATGTCAGATCATCACATTCGTCATACACCCC
TTTTGAGCAAAGCGTGGTATGCGTAGAATGGATGATCTGTTATGAGATTA
GGTTGGTTTTAAACAATTTTCATACAGTATAGTCCGTCCTGTTTCATTTG
GATAATATGGCCCTATACCAGCACTTTAATTTCATTGTTTTTGATAGTGA
AAAAGAAAATGTTTGTAAAGGGGAAAACTTCACCCTCCAACGGCCGAATT
TTTCAGAGCACTAAAAAATAAAAGAGGCCAAGGAGCGCGCTAATATTTGT
GTACACTAATTCTCAATCTTTCTGATTTTTTTAAACCTTTCCGTTACAAA
GCTGTAGGTTATATTTTGTTTTGTATTTTTAGAAAGGCCATACAAACTGA
ATATTTTCTAAAATATTTATTTTGGTGGACCTCAAATAAAAAGTTCACGT
TTTGACAAAAAATATCTGTTGCAAATTGGTTTTTGATGAATTTAATGATC
TGTGGAGAAAAGACAGACTTAACGCAAATACAAAATATCTGAAATTTCAT
AATCAGAAAGAAAATGAAGAGAGCTTTGGTTTTTATACTTTGCTATTATA
ATGTGGTTTACACGTATAACCAAAAACGTTTTCGAAGATCTAGGTGGGCT
TTTGATGTAAGTTTGAATGCTGGTTTAACGGTTTTCAATACGCATTATAA
GAACATTTCAAATTTTTGAAGCCTTCGGGTGTTCTTAACTTTTTGAGTTT
TAAGCCCAAATATATTCTTAACATGTTCTTATTTACACCATTTTGGGAAT
ATTTTTGACCATTTCCCTAAGAAATAGGGTGTTTTTGAGTCCACAATGCC
TCAAAATGTTCTTAACTTGTTCTTAACATTTTGGCCAGCGAAGCCTTGTG
TTCTTATATAGTTTGTTCTTATTAAAAAAAAACGTGTAGCATACAAGTAA
TTTAAAAGTTGCTAGAGTAAAATAAAATGAAAGATATATCTGAATGGTAT
ATATACACGCATTTTTTTAAGAACCAATAAATCTTTCCTGAGCCTGAGAT
TGTTCTTAAATATCTATTGTTCTCTATATATGAATGTAGAAATTTTAAGT
AAGGAATCTCAGACTTTGGACCAATAAGACCAGAGTGATTCCAGCTGAGA
TGGAGTTTTTAAAAGGTACTTTAATGATTGGTCATTTGAAGTAATAAAAA
TGACGCGTTCTTTAGAAAAAGTAATAAAATTGTTTTATACTGGTTAACGA
CCAATCAAATCAATTAAGAGCTTGTAAAAACTCCATCTCATCCCAGTGAT
TCGACTTTTGGAGAGAATAAGGAACTATACCTAAAACACCTTTTAATCCC
TTTTATCTTTTGAACTTTAACAAAATATTCGTTTTTCCCTTTTTTTATAG
ATGGCTGCTTCGAAGAAAAACATGGATCACAAATATGACTTAAATCAAAT
CGAGAACGATATCCTGGCAGAAGTCATGCATGAAAACCACCTTAATGATG
TCGAAGATGGCCCTTCAAGAGATAACCTTTACACAGAAAAGAACATTCGA
CATCGGGCGAGTTTAGATTTATCGAATAAGCGAGAGCAACAACAAACGGC
AGATGAGTTATCGAGGCTACACAAAATGGGAGCTAAGCTGCTAGAAAGTT
ATTATGACGAAATGAAAAGAGGAACGTCCGAAAAATTTGATGACGATGAT
GATATGGATGAAATCAACTTTTGATNAGTTTGTTCTTATTAAAAAAAAAC
GTGTAGCATACAAGTAATTTAAAAGTTGCTAGAGTAAAATAAAATGAAAG
ATATATCTGAATGGTATATATACACGCATTTTTTTAAGAACCAATAAATC
TTTCCTGAGCCTGAGATTGTTCTTAAATTTCTATTGTTCTCTATATATGA
ATGTAGAAATTTTAAGTAAGGAATCTCAGACTTTGGACCAATAAGACCAG
AGTGATTCCAGCTGAGATGGAGTTTTTAAAAGGTACTTTAATGATTGGTC
ATTTGAAGTAATAAAAATGACGCGTTCTTTAGAAAAAGTAATAAAATTGT
TTTATACTGGTTAACGACCAATCAAATCAATTAAGAGCTTGTAAAAACTC
CATCTCATCCCAGTGATTCGACTTTTGGAGAGAATAAGGAACTATACCTA
AAACACCTTTTAATCCCTTTTATCTTTTGAACTTTAACAAAATATTCGTT
TTTCCCTTTTTTTATAGATGGCTGCGTCGAAGAAAAACATGGATCACAAA
TATGACTTAAATCAAATCGAGAACGATATCCTGGCAGAAGTCATGCATGA
AAACCACCTTAATGATGTCGAAGATGGCCCTTCAAGAGATAACCTTTACA
CAGAAAAGAACATTCGACATCGGGCGAGTTTAGATTTATCGAATAAGCGA
GACAAGCAACAACAAACGGCAGATGAGTTATCGAGGCTACACAAAATGGG
AGCTAAGCTGCTAGAAAGTTATTATGACGAAATGAAAAGAGGAACGTCCG
AAAAATTTGATGACGATGATGATATGGATGAAATCAACTTTTGATTTCAA
AAAATGACTTTTAGACTTGTGAATTTATGATAAATAGATTGACGAAGACT
GAACTCTATAAAAAAATACAAATATGTAGAGTAGAATAGAAATGTATGTT
AGAATTTGCTCGATTATAACGCTATAATTTTAAATGGAAAATATTTTTAC
GAATCAAAACCAAATTAAAATAAAGATTGTTGCAGATTGACAATTTAAAA
T Coding sequence (CDS) from alignment at sc0000081:618813..622263- >TCONS_00008053 ID=TCONS_00008053|Name=TCONS_00008053|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000081:618813..622263- (Clytia hemisphaerica)
ATGAATCGTTATGATATCGTGTTATTGGCAACTTTAACCATCTTTTATTC
AATGGTGCTAGAAAATGCGACAGCGAAATCAGGATGCGGTTTTCGATGGC
GGATACCGTGTCCATCTGATGGCAAGAAGAGAAGCATGATGGCTGCGTCG
AAGAAAAACATGGATCACAAATATGACTTAAATCAAATCGAGAACGATAT
CCTGGCAGAAGTCATGCATGAAAACCACCTTAATGATGTCGAAGATGGCC
CTTCAAGAGATAACCTTTACACAGAAAAGAACATTCGACATCGGGCGAGT
TTAGATTTATCGAATAAGCGAGACAAGCAACAACAAACGGCAGATGAGTT
ATCGAGGCTACACAAAATGGGAGCTAAGCTGCTAGAAAGTTATTATGACG
AAATGAAAAGAGGAACGTCCGAAAAATTTGATGACGATGATGATATGGAT
GAAATCAACTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008053-exon-sc0000081-1575043694:621841..622263 | TCONS_00008053-exon-sc0000081-1575043694:621841..622263 | Clytia hemisphaerica | exon |
| TCONS_00008053-exon-sc0000081-1575043694:618813..619346 | TCONS_00008053-exon-sc0000081-1575043694:618813..619346 | Clytia hemisphaerica | exon |
| TCONS_00008053-exon-sc0000081-1510915933:621841..622263 | TCONS_00008053-exon-sc0000081-1510915933:621841..622263 | Clytia hemisphaerica | exon |
| TCONS_00008053-exon-sc0000081-1510915933:618813..619346 | TCONS_00008053-exon-sc0000081-1510915933:618813..619346 | Clytia hemisphaerica | exon |
| TCONS_00008053-exon-sc0000081-1491911889:621841..622263 | TCONS_00008053-exon-sc0000081-1491911889:621841..622263 | Clytia hemisphaerica | exon |
| TCONS_00008053-exon-sc0000081-1491911889:618813..619346 | TCONS_00008053-exon-sc0000081-1491911889:618813..619346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000081 | supercontig | sc0000081:618813..622263 - |
Blast
The following BLAST results are available for this feature:
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