TCONS_00008067 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008067
Unique NameTCONS_00008067
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008067 ID=TCONS_00008067|Name=TCONS_00008067|organism=Clytia hemisphaerica|type=transcript|length=381bp
GTCGAATATGATTTTTACGGATACATCAATAATATAATACCATCATTTAG
AAGAACAGAAAGTTAGAGGGACGTAAGATTtgaatgaatttctttgattt
ccCCCATTGTTTTGGTCGTCCCACGTCCCTCTAGCTTTCAACTCTACTGG
TTTTCATAAATATTATAAAGCAATtcatttttatattgatttcgTAATAA
ATTCAAAGATAATTGTCATGGTGATACATAAAGCTGCCTCTCCAGTTATA
CAAAATTAAAAAGGGGAAAAATTCAAGGCAAGATAAATGTAATATGTAAT
TGTCAGACAGATGTTAGATCCAAAAAATTGggtacattttcaaatttaat
aggTTACTTCAACTTTAATTTGACACATTCA
Run BLAST on NCBI

transcript from alignment at sc0000081:42356..42736

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008067 ID=TCONS_00008067|Name=TCONS_00008067|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000081:42356..42736 (Clytia hemisphaerica)
TGAATGTGTCAAATTAAAGTTGAAGTAAcctattaaatttgaaaatgtac
cCAATTTTTTGGATCTAACATCTGTCTGACAATTACATATTACATTTATC
TTGCCTTGAATTTTTCCCCTTTTTAATTTTGTATAACTGGAGAGGCAGCT
TTATGTATCACCATGACAATTATCTTTGAATTTATTAcgaaatcaatata
aaaatgaATTGCTTTATAATATTTATGAAAACCAGTAGAGTTGAAAGCTA
GAGGGACGTGGGACGACCAAAACAATGGGggaaatcaaagaaattcattc
aAATCTTACGTCCCTCTAACTTTCTGTTCTTCTAAATGATGGTATTATAT
TATTGATGTATCCGTAAAAATCATATTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004537XLOC_004537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008067-exon-sc0000081-1491911889:42356..42736TCONS_00008067-exon-sc0000081-1491911889:42356..42736Clytia hemisphaericaexon
TCONS_00008067-exon-sc0000081-1510915933:42356..42736TCONS_00008067-exon-sc0000081-1510915933:42356..42736Clytia hemisphaericaexon
TCONS_00008067-exon-sc0000081-1575043694:42356..42736TCONS_00008067-exon-sc0000081-1575043694:42356..42736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:42356..42736 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.206266	0.201142	0.233545	0.456974	7.78851	2.85749	3.97781	2.73092	3.30251	2.153	1.88078	2.61007	1.37181	0.142464	1.17125	1.00554	0	0.634837	0.438531	1.37667	1.9943	4.66919	2.1285	2.79517	2.21459	3.75528	1.69699	2.41476	3.20515	2.33253
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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