TCONS_00008068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008068
Unique NameTCONS_00008068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008068 ID=TCONS_00008068|Name=TCONS_00008068|organism=Clytia hemisphaerica|type=transcript|length=533bp
CAAGAATTAAGCTTTGCGGGAAAATTCTATCACCAAGTAAGAGTGTGAAG
TATTTGGGTGTTCACCTTGACAATCATCTAAACTGGAAGGTTCATACTTC
TTTCGTTGCTGCTACATTGAGAAGGGCAAATGTGGCAATATCCAAACTTC
GTCACTATGTTCCAATTCACAtccttctaaacatttatcatgcaattttt
gcttCTCATGTTCGCTATGCTAGTCAACTCTGGGGACTGTGGCAATACTG
TCACACATAGGATTCTTACTCTTCAAAACACTGCACTAAGACTCATGACC
TTTAGTGAGCCAAGAACTTCTGCCACTCCCCTGTTTGCTGAgcttaaatt
actcaaaatctttgatcaggtgaAAGCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATTCAAAAATACCTCCAGGGTAAT
CTTCCATCTGATGTcctatcaacacttaattttgatgaaattgatcacaa
aactggcaccaggggcaaagctattaaactacc
Run BLAST on NCBI

protein sequence of TCONS_00008068-protein

>TCONS_00008068-protein ID=TCONS_00008068-protein|Name=TCONS_00008068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MQFLLLMFAMLVNSGDCGNTVTHRILTLQNTALRLMTFSEPRTSATPLFA
ELKLLKIFDQVKXXXXXXXXXXXXXXXXXIQKYLQGNLPSDVLSTLNFDE
IDHKTGTRGKAIKL
Run BLAST on NCBI

transcript from alignment at sc0000081:47177..47709

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008068 ID=TCONS_00008068|Name=TCONS_00008068|organism=Clytia hemisphaerica|type=transcript|length=533bp|location=Sequence derived from alignment at sc0000081:47177..47709 (Clytia hemisphaerica)
ggtagtttaatagctttgcccctggtgccagttttgtgatcaatttcatc
aaaattaagtgttgataggACATCAGATGGAAGATTACCCTGGAGGTATT
TTTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGCTTtcacctgatcaaagattttgagtaatttaagcTCAGCAAA
CAGGGGAGTGGCAGAAGTTCTTGGCTCACTAAAGGTCATGAGTCTTAGTG
CAGTGTTTTGAAGAGTAAGAATCCTATGTGTGACAGTATTGCCACAGTCC
CCAGAGTTGACTAGCATAGCGAACATGAGaagcaaaaattgcatgataaa
tgtttagaaggaTGTGAATTGGAACATAGTGACGAAGTTTGGATATTGCC
ACATTTGCCCTTCTCAATGTAGCAGCAACGAAAGAAGTATGAACCTTCCA
GTTTAGATGATTGTCAAGGTGAACACCCAAATACTTCACACTCTTACTTG
GTGATAGAATTTTCCCGCAAAGCTTAATTCTTG

Coding sequence (CDS) from alignment at sc0000081:47177..47709

>TCONS_00008068 ID=TCONS_00008068|Name=TCONS_00008068|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000081:47177..47709 (Clytia hemisphaerica)
tagtttaatagctttgcccctggtgccagttttgtgatcaatttcatcaa
aattaagtgttgataggACATCAGATGGAAGATTACCCTGGAGGTATTTT
TGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCTTtcacctgatcaaagattttgagtaatttaagcTCAGCAAACA
GGGGAGTGGCAGAAGTTCTTGGCTCACTAAAGGTCATGAGTCTTAGTGCA
GTGTTTTGAAGAGTAAGAATCCTATGTGTGACAGTATTGCCACAGTCCCC
AGAGTTGACTAGCATAGCGAACATGAGaagcaaaaattgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004538XLOC_004538Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008068-proteinTCONS_00008068-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008068-exon-sc0000081-1491911889:47177..47709TCONS_00008068-exon-sc0000081-1491911889:47177..47709Clytia hemisphaericaexon
TCONS_00008068-exon-sc0000081-1510915933:47177..47709TCONS_00008068-exon-sc0000081-1510915933:47177..47709Clytia hemisphaericaexon
TCONS_00008068-exon-sc0000081-1575043694:47177..47709TCONS_00008068-exon-sc0000081-1575043694:47177..47709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:47177..47709 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.30738	5.06232	11.3817	9.88502	7.15881	6.37545	6.46197	6.05612	4.35541	4.59993	5.29991	4.79723	3.70482	6.03377	2.55023	2.5529	4.95047	2.0005	5.84041	4.44986	4.45988	4.87792	2.19775	2.65175	5.76318	7.70721	6.61871	5.66205	5.48093	4.07366
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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