TCONS_00008076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008076
Unique NameTCONS_00008076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008076 ID=TCONS_00008076|Name=TCONS_00008076|organism=Clytia hemisphaerica|type=transcript|length=557bp
TAGTTTTCTTTCTATACATTACTTTCAATATTATAACTTCATACATTACT
TCgcgattttatcaaaataaatgtAGTACTACCTGAAAAAAAGCATAAGG
ACGTACACACCTAGGTTTTATAATGAATTTCGGGAAAATATTATGATAAC
AATCCCTAAGTGTTTTGCCCATCGATGTTTGTATGTACGTGGGTGGGGCA
TACTTGTTTTCGTCTTGAAAAGAGAAAACCCTTTCCCGTCAATGTTTTCA
TAGCTAGCTAACTTACTTATGTTCAATCATGAAATCCAAAACAATTCTCT
TTCCGAAACCTTTCTTTGGATATGACGAAtctatgacgtcacaaaataaa
gGAATAACTTCATGTTAAAATCTCCATATTTTTTTCCCGATCTTGTTCAT
TGTTGAGTCGCGTTGAGTTGTAATGTGTGGATTGAGATTTAGTATTTTCA
GTGAGGATACCTCTTTGACGAGTAGAATGAAATGTAGCTTAGGAGCCTGT
ACAAGAAAAGtagaaaacatttttaagtATAGAATCAGCAACAAATAttg
aatgggc
Run BLAST on NCBI

transcript from alignment at sc0000081:124282..124838

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008076 ID=TCONS_00008076|Name=TCONS_00008076|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at sc0000081:124282..124838 (Clytia hemisphaerica)
gcccattcaaTATTTGTTGCTGATTCTATacttaaaaatgttttctaCTT
TTCTTGTACAGGCTCCTAAGCTACATTTCATTCTACTCGTCAAAGAGGTA
TCCTCACTGAAAATACTAAATCTCAATCCACACATTACAACTCAACGCGA
CTCAACAATGAACAAGATCGGGAAAAAAATATGGAGATTTTAACATGAAG
TTATTCctttattttgtgacgtcatagaTTCGTCATATCCAAAGAAAGGT
TTCGGAAAGAGAATTGTTTTGGATTTCATGATTGAACATAAGTAAGTTAG
CTAGCTATGAAAACATTGACGGGAAAGGGTTTTCTCTTTTCAAGACGAAA
ACAAGTATGCCCCACCCACGTACATACAAACATCGATGGGCAAAACACTT
AGGGATTGTTATCATAATATTTTCCCGAAATTCATTATAAAACCTAGGTG
TGTACGTCCTTATGCTTTTTTTCAGGTAGTACTacatttattttgataaa
atcgcGAAGTAATGTATGAAGTTATAATATTGAAAGTAATGTATAGAAAG
AAAACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004546XLOC_004546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008076-exon-sc0000081-1491911889:124282..124838TCONS_00008076-exon-sc0000081-1491911889:124282..124838Clytia hemisphaericaexon
TCONS_00008076-exon-sc0000081-1510915933:124282..124838TCONS_00008076-exon-sc0000081-1510915933:124282..124838Clytia hemisphaericaexon
TCONS_00008076-exon-sc0000081-1575043694:124282..124838TCONS_00008076-exon-sc0000081-1575043694:124282..124838Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:124282..124838 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.305843	0.298245	0.808012	0.790513	0.68741	0.21728	0.262139	0.122706	0.257728	0.42565	0.103287	0.135793	0.339011	0.211239	0.347335	0.248496	0	0.0784425	0	0.453616	0.197137	0.144235	0.116891	0.106271	0.437826	0.293062	0.838742	0	1.69731	1.614
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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