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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008090 ID=TCONS_00008090|Name=TCONS_00008090|organism=Clytia hemisphaerica|type=transcript|length=1679bp
CACAGTTAGAGATAATATTCATGAGCTGTTGTGCAGTCATAAGGTATTTA
AGGAcagttatctggcacccagatggtgacattttcattttcattttcga
cacgctaaagctccgaaggtcgggaaaattttcaacatctggaaggtgtT
TACATTgcggaattttgcgagactgcgtcaagaattttgcagcgggaggt
ctgataacccagccctcgttttcggggattggcaggtccaaccgaaatat
NatttaaatttaaatttttcataccaatttgtTCTAGAAGGGCAGCTGTG
CTTCCAGTGATCAAGGGCACCACAGATGAAACAGCCTGGCTGACGAGGTC
GAATCGACATTGCACCTTGGATGTTTGGCACTGGATTAATCATCCGAACA
TTTGCAGCTGGAATAACCCTTGGCACTTGCTGAAATACCTGAGCATGTTG
AAGCCTTGGTTGTTGGAAGGAGATTCCCTGGTAGCCAAGATGTTGTGAAG
CGAGCGGCATTGCAGGAGCAGGAAAACGATTGTTGGAAAACTTGATTGCC
GGTGAGAAAGAAGATGATTTCTTGGCATCCTTTGCTTTTTTGGATATAGC
ACGATTCTCTGCCTGACGCATTTTCTTGCCATCATCGGAGTCTGAAGCTA
AATCGTCGGTGAGATACTCCTGGACGGTGTCCCAACCTGCTGGAGATCGA
TCAGCTAACTTCAAGACCTTTCTCCTCTTCCTTATGGTATCGCTAATCTC
ATCCAAAGCATCCGCCAAACGTTTTCGAGACCCAGCTTCGACTAGATCCT
TAGCCTCCTGGCTGAGGTCATGAAGATTGACCAGAAGATCGTCTTGTAAT
TTGTTCGATTTATACTTAAAAACATAAGAACTTTTAGTTTCTTTTTTCGG
CTTGTTTGAGCTGTTTAATTTCTTCTGCCATTCCTTCTTATCCTCTACCC
TCTTAGCCTCCATTAAAAGTAACTGTTGTTGGATATTGATCAGCATTCTA
TTGGTCTCCATTTGGGGACCAGGTTGAGCCAAAGGGATACCCTCCTCTGC
CGGATTTTCCCCGTGTTGCACATTGGCCTCTTGAATTGCCTGCCTCACAA
ACATTTGAGAGTCTTGATTTTTATCAACCTGGGAGGGTCTGGCGATTGTA
ATTAAAGGGATATCATTCTCCTTGTGTCTGGGATAAAACAAATTCTTGCG
AAGGCTGTGTTTTTCTTGGCCTCAACCTTGGGGTGGTAGTAGACACAGTT
GTTGCAGCAGTGGAAGTTGGTTCAGTTGCTATCGCATTTTTTTCCTCCTG
GTTGATGTACTTGTTTGTGTTAACTTCGTCTTGCTCATAGATGAATTCGT
ATTGAAAtagtttgaagattttgatttttctccaaaGAAATAACTGGATA
ATGAATCCATGTCCTTCCCACCTAGACAAGAGTTTGAAAGACGTGTGATT
GAGAAAaacaagtctaccatttttagtagCACGCGACCCTCTTGTCTCAG
TTAATAATTTACCGAAATCGCAAAAACACGACATATACTTACGGAaccgt
aaataaattcacaaaTTCTCTTCGACTCGTATTTCCATAAGTGGAATCAA
AATTAATGGTTTTCTCCCAAAGTAGCAGTTTGCTATCAAAGATATAACAA
TAGAGTAGTAGGAGTGGTATCTCCGTCTA Run BLAST on NCBI protein sequence of TCONS_00008090-protein >TCONS_00008090-protein ID=TCONS_00008090-protein|Name=TCONS_00008090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MFVRQAIQEANVQHGENPAEEGIPLAQPGPQMETNRMLINIQQQLLLMEA
KRVEDKKEWQKKLNSSNKPKKETKSSYVFKYKSNKLQDDLLVNLHDLSQE
AKDLVEAGSRKRLADALDEISDTIRKRRKVLKLADRSPAGWDTVQEYLTD
DLASDSDDGKKMRQAENRAISKKAKDAKKSSSFSPAIKFSNNRFPAPAMP
LASQHLGYQGISFQQPRLQHAQVFQQVPRVIPAANVRMINPVPNIQGAMS
IRPRQPGCFICGALDHWKHSCPSRTNWYEKFKFKXYFGWTCQSPKTRAGL
SDLPLQNS Run BLAST on NCBI transcript from alignment at sc0000081:323035..324713 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008090 ID=TCONS_00008090|Name=TCONS_00008090|organism=Clytia hemisphaerica|type=transcript|length=1679bp|location=Sequence derived from alignment at sc0000081:323035..324713 (Clytia hemisphaerica)
TAGACGGAGATACCACTCCTACTACTCTATTGTTATATCTTTGATAGCAA
ACTGCTACTTTGGGAGAAAACCATTAATTTTGATTCCACTTATGGAAATA
CGAGTCGAAGAGAAtttgtgaatttatttacggtTCCGTAAGTATATGTC
GTGTTTTTGCGATTTCGGTAAATTATTAACTGAGACAAGAGGGTCGCGTG
ctactaaaaatggtagacttgttTTTCTCAATCACACGTCTTTCAAACTC
TTGTCTAGGTGGGAAGGACATGGATTCATTATCCAGTTATTTCtttggag
aaaaatcaaaatcttcaaactaTTTCAATACGAATTCATCTATGAGCAAG
ACGAAGTTAACACAAACAAGTACATCAACCAGGAGGAAAAAAATGCGATA
GCAACTGAACCAACTTCCACTGCTGCAACAACTGTGTCTACTACCACCCC
AAGGTTGAGGCCAAGAAAAACACAGCCTTCGCAAGAATTTGTTTTATCCC
AGACACAAGGAGAATGATATCCCTTTAATTACAATCGCCAGACCCTCCCA
GGTTGATAAAAATCAAGACTCTCAAATGTTTGTGAGGCAGGCAATTCAAG
AGGCCAATGTGCAACACGGGGAAAATCCGGCAGAGGAGGGTATCCCTTTG
GCTCAACCTGGTCCCCAAATGGAGACCAATAGAATGCTGATCAATATCCA
ACAACAGTTACTTTTAATGGAGGCTAAGAGGGTAGAGGATAAGAAGGAAT
GGCAGAAGAAATTAAACAGCTCAAACAAGCCGAAAAAAGAAACTAAAAGT
TCTTATGTTTTTAAGTATAAATCGAACAAATTACAAGACGATCTTCTGGT
CAATCTTCATGACCTCAGCCAGGAGGCTAAGGATCTAGTCGAAGCTGGGT
CTCGAAAACGTTTGGCGGATGCTTTGGATGAGATTAGCGATACCATAAGG
AAGAGGAGAAAGGTCTTGAAGTTAGCTGATCGATCTCCAGCAGGTTGGGA
CACCGTCCAGGAGTATCTCACCGACGATTTAGCTTCAGACTCCGATGATG
GCAAGAAAATGCGTCAGGCAGAGAATCGTGCTATATCCAAAAAAGCAAAG
GATGCCAAGAAATCATCTTCTTTCTCACCGGCAATCAAGTTTTCCAACAA
TCGTTTTCCTGCTCCTGCAATGCCGCTCGCTTCACAACATCTTGGCTACC
AGGGAATCTCCTTCCAACAACCAAGGCTTCAACATGCTCAGGTATTTCAG
CAAGTGCCAAGGGTTATTCCAGCTGCAAATGTTCGGATGATTAATCCAGT
GCCAAACATCCAAGGTGCAATGTCGATTCGACCTCGTCAGCCAGGCTGTT
TCATCTGTGGTGCCCTTGATCACTGGAAGCACAGCTGCCCTTCTAGAaca
aattggtatgaaaaatttaaatttaaatNatatttcggttggacctgcca
atccccgaaaacgagggctgggttatcagacctcccgctgcaaaattctt
gacgcagtctcgcaaaattccgcAATGTAAacaccttccagatgttgaaa
attttcccgaccttcggagctttagcgtgtcgaaaatgaaaatgaaaatg
tcaccatctgggtgccagataactgTCCTTAAATACCTTATGACTGCACA
ACAGCTCATGAATATTATCTCTAACTGTG Coding sequence (CDS) from alignment at sc0000081:323035..324713 >TCONS_00008090 ID=TCONS_00008090|Name=TCONS_00008090|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000081:323035..324713 (Clytia hemisphaerica)
ATGTTTGTGAGGCAGGCAATTCAAGAGGCCAATGTGCAACACGGGGAAAA
TCCGGCAGAGGAGGGTATCCCTTTGGCTCAACCTGGTCCCCAAATGGAGA
CCAATAGAATGCTGATCAATATCCAACAACAGTTACTTTTAATGGAGGCT
AAGAGGGTAGAGGATAAGAAGGAATGGCAGAAGAAATTAAACAGCTCAAA
CAAGCCGAAAAAAGAAACTAAAAGTTCTTATGTTTTTAAGTATAAATCGA
ACAAATTACAAGACGATCTTCTGGTCAATCTTCATGACCTCAGCCAGGAG
GCTAAGGATCTAGTCGAAGCTGGGTCTCGAAAACGTTTGGCGGATGCTTT
GGATGAGATTAGCGATACCATAAGGAAGAGGAGAAAGGTCTTGAAGTTAG
CTGATCGATCTCCAGCAGGTTGGGACACCGTCCAGGAGTATCTCACCGAC
GATTTAGCTTCAGACTCCGATGATGGCAAGAAAATGCGTCAGGCAGAGAA
TCGTGCTATATCCAAAAAAGCAAAGGATGCCAAGAAATCATCTTCTTTCT
CACCGGCAATCAAGTTTTCCAACAATCGTTTTCCTGCTCCTGCAATGCCG
CTCGCTTCACAACATCTTGGCTACCAGGGAATCTCCTTCCAACAACCAAG
GCTTCAACATGCTCAGGTATTTCAGCAAGTGCCAAGGGTTATTCCAGCTG
CAAATGTTCGGATGATTAATCCAGTGCCAAACATCCAAGGTGCAATGTCG
ATTCGACCTCGTCAGCCAGGCTGTTTCATCTGTGGTGCCCTTGATCACTG
GAAGCACAGCTGCCCTTCTAGAacaaattggtatgaaaaatttaaattta
aatNatatttcggttggacctgccaatccccgaaaacgagggctgggtta
tcagacctcccgctgcaaaattcttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008090-exon-sc0000081-1491911889:323035..324713 | TCONS_00008090-exon-sc0000081-1491911889:323035..324713 | Clytia hemisphaerica | exon |
| TCONS_00008090-exon-sc0000081-1510915933:323035..324713 | TCONS_00008090-exon-sc0000081-1510915933:323035..324713 | Clytia hemisphaerica | exon |
| TCONS_00008090-exon-sc0000081-1575043694:323035..324713 | TCONS_00008090-exon-sc0000081-1575043694:323035..324713 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000081 | supercontig | sc0000081:323035..324713 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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