TCONS_00008100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008100
Unique NameTCONS_00008100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008100 ID=TCONS_00008100|Name=TCONS_00008100|organism=Clytia hemisphaerica|type=transcript|length=3143bp
TaattttcgaacatttttataatttgaactCGGCGGCGCCGCCACGTCGA
GCGCTAGACCCACAAAGACTCCGCCAGACGGCGAGACAAAGCTTGTCTAG
TCATGTGATAACCAGGTGTTTCCATGTAAAGACTTGTCTGGCTCTCTTTT
GAATCGTCTCCTCAGACAAGTTGTCTGGGTCATCCAGCGTATCAACCAAT
CGATCAGGTTTGAGGAGCAAAGTAGTACCTgtATAAAGATGATCGACTTC
AATCAACTTGAAGACTTTTGTCCCATTTTGAAGGAACAAGCTCAATTACT
AATACAAGATTTCATAACTGAACAAGGCTTAAACGAACAGCTATGTCAAG
CTATGCTGACAGAATTTTCTGAATGGAATTACGATACAAAACTCATTGGA
AAAGAACCAAACAATATTCTTCTGTTTTCCTGGCAATGTTTGGAATGCCC
TATTTCTAAGACATTCATTGCTTGTTATCAAACTACGTCAAAACTGTCAA
AATTGTTATTCCATCAAGAAAAAGCATTAGAAGTTGTTAATGCCTCATTA
AACGATAACGAGACCTTGTTAGCATTCACAACCGTGGAATCTGCATCAAA
ACTCGACAGAGATTCAACTGGACAATTTGACCACACCTTTAGCTCCTACA
TAGCGGAAATAGCACCTCAAAATCGTGTCTTTTCATTAAATATTGAGTGG
AATACTTACCAAAAAGTACAATTTCTGAGCCACACTTTAAAATCTAAAGA
CAATGTATACCATATGATATTTTGTAACCATAAAAACTCAATTCAGTTAT
ATGAGCTTCACTTAAAGCGTGCTGGTGATGGGAATATCATAATGACACAG
CAACCTTCTACCAAACAAATTGCTGGCCAGTTCTTATGGTCTATGTTTGA
CTCTAACAACCAACGGTTATATTATCTCCAACTTCTTCCCAAGGATGAAG
AAGAATTAGAGGCTGCCGCAGTCGTCACAGCAATCGATTTCAAACTTGAT
GGAATATACGAATATGTCATGAATTTCATCCTCCCCATCAAACTGCGAAT
GGAATTATTGCGTAATCGTTCTTACTACAACGTAGATCATTTTTCAAACA
TCATCTCATGTCAGACTTTCAAGATGAATATTTTAACTGAAGAGAGAGGT
TCTTTTTATGTTTGTTTTCAACACCAAGTAACCAGCACAAAATATACAGA
AGAGGAGAGCAGTGAAGATGACCAATCTGTCATTTCAGAATCTTCCACCA
GCCATGACTCAATCCTCCAATCCTCCGGCACCACTGACAGCTGTTTTGTT
AACTATACCGTCATTTGTGTTCACGGAGCATATTCAGCACATTGTTCTTC
TGTTCTCCCATATGATGATGATTGTAACGAACCTCAAATTCATTTCATGT
TGTTTAGTGATTACTTACTGGCCTTCATACCAGGATCATTTCTCCATTTC
TTGGACATGAGTTGTGAGCATGAACCAGTTCACAATCTTCTCATTCGTAG
AAAATCCTGTTTACCGAAGATGCCAATTCGAAACAAAACCGATTACAAGT
TTGTACCTTTCATGTCTGAATCCGATTCTGGAGATTCTAAAACCGAACAT
TTAAAGTTGCTGGAAATTACTACTCTTTGTGTATACAACCTAACTTTGAA
TGCTGCGTCGATGTACAAATTTTTCTTATCGTCAAAACCTCAGATTCGAT
TATCTATCTTACATGGCTGTTTGAATCATTTCAATCATTCCAAACTGACC
AAGAAAGTCTTGGCAAGAATCTGTCAGGATCCTGCGAATTCGGATTCTTT
ACTGATGCTTAAAGAATATCTGGTACTGGCACCTTATGTTGAGTTGAGGA
AATCTGTTTCATTGCTCGATATGAAAGTTTTTCCATTTACAACTCAAAGT
TGTTATCGAGGCCAGGTTGAACGTAACTCGAGTGGCCGTCGAGACgtgta
tttatcttacaaaaCTTTCAAGGAGGATTTAGTTATTCAGATCCAGAAAG
TGTTTCGATGTTGTTTAACAGGTTTTTGGAGGACTTTATTGAAAATTATG
ACACATGAGTCGCAATACCGAAATAAACGAGTCTCCTTGAGTATTTTCTA
CATGGCTGGTATCGATGTAGAGGAATCAGCGATTACTTTTAAAGCAGCTC
GAGGTGGTAGGCGAAATACGTCCTTCGTTGTGATTCCCAGACCTTCTGTT
GGTACTCTTGACGATTCAACCCTCCACGGAGTCGATAAATTATCGATTGA
TGACAGCGCAATCGATGAAGATCGTAAATTTAATGAGAATCTGAACGCGA
TTGCTACTCAATTAATCGCTAATTACGTGAGTCGTCATTTTGGGCAAGAC
ATGAAACCGAGGATTGATGATTTATGCTTGAATTACATGGAGCATAGGTG
TGAATCTATTGAGCAGTTGTGGAAAGTTGTTTTGAAGTCGCTTGACTTAA
GTGATGAAGGAGTGAGGTTTTGTACTCTCGATACTCCTTCAGATGAACTT
GAACTAGCAGCATTTCAATTGGTGGAACGGGTTAAAGTGATTTGTGACCA
GTTATGTTATCCACAGTTGAATCGCATGAATGATTTGTTATGTTCACTAA
GTTTCCGCTCGCTTCGACGGTTTCAATTCGTACGATACGTTGACGCATGC
GTTTTCAAGGTGAATATCAACTTTGTGAGACGTGTCATCAAAGAAGTTCC
AGAAAACAACGAGAAATCGCAATTAATTGAAATTCTTTTAGGAAAACTAT
CTAAGACTGAAGTTCAGAAGATTTTATTGGAATGGAATAATCCGATCGGG
CGAAAATATTTATCGGAATACGTTTCATGGAAAATGCCGTTCAATGAGAT
ACACACGCCTAACAATACGAATTTCGAACAAGTTTTCCCTAACGGAGATG
AGTTTATGCCGTTGAAGACACTGTTACATGCATTTAAAGTTCACGGGAAA
ACGTCTGCCATGTTTGGTGGAAGTCGCcgagataaaaaacaaaatgatat
GTTAGCGGAGACGGCGCTATATGAAACAAATATGTTGTTGAAACCTTCCG
ACGAGTAACTCTGTTACTTTGAATTAACTTTTATTcgtatattttgtatt
ttctcaGCTAAATTATTGATAACCCTTGTAGCGTGTCCGTAAT
Run BLAST on NCBI

transcript from alignment at sc0000082:89060..97494+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008100 ID=TCONS_00008100|Name=TCONS_00008100|organism=Clytia hemisphaerica|type=transcript|length=8435bp|location=Sequence derived from alignment at sc0000082:89060..97494+ (Clytia hemisphaerica)
TaattttcgaacatttttataatttgaactCGGCGGCGCCGCCACGTCGA
GCGCTAGACCCACAAAGACTCCGCCAGACGGCGAGACAAAGCTTGTCTAG
TCATGTGATAACCAGGTGTTTCCATGTAAAGACTTGTCTGGCTCTCTTTT
GAATCGTCTCCTCAGACAAGTTGTCTGGGTCATCCAGCGTATCAACCAAT
CGATCAGGTTTGAGGAGCAAAGTAGTACCTGTAAGTACTTTTCTTTAAAT
GTTCAATTTTGTAATTGTGCTTGTaatccaggcgtagttaatcgataaat
agaccttttttcaaagaggccaccctgttgaatatgtagtccagcagaaa
aacaatgattaaaccatgcataattattacaatatgcatgatacagaaTA
ATTAttcatggctctatcattgtttttatggctggactacataattattc
aacaggacatcctctttgaaaaatgaaaaaaggtctataatcgataagta
atcgatggattagatatcgattaaccgaatgaatacacctttcccgtaat
tcgtaaaactaatgcgcgcgcattattttgatgctctccattgtttggtc
tctggaggtaaacaaacccgtttttgccNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNggccgaaatgacaagttgggctcctgtgggg
gagagcggttatctttggaattggaaactattggaagccaatagagttta
ttctcaagggtgtgtgtgcaaaattatACATGATTATATATTTAGGTAAA
ACATagaaagacaaaagacaaatgttttttttttataagcatacaaaaat
ccgaaaacaggctcagagatgcttaggtcgaaagcttaataaggatgaaa
aatgaataaatttagggaaatactgaaaatccgtaaaattccagctaaaa
aaagcaaaaatcaggaaaaaaacatttttcgtaggttcaagtaatgcttg
ccatatgcttaatttttcaccatatctgagcctagatatgcttataagtg
caatgcttataaaaaaaacatgtatattagatataagaaaacagaaaatc
tttaaacattgtacatacatagatatatattttttaaacatagAAAGACA
AAAGATATGCAAATGTTGGAAgacgaaataaaaataactaaTGTCTTACC
TAAAGgtcaaacagatttttgccgttGAGCAAACTTTCTGATGTTAAAAG
TCTATACAATCAGATACAacacaaaaatttcttcaaattttaagatAAAC
TCCAAAAGGAACCCCTTGGTTGTGTTTCTAGTCACAGAGCCAAGCTAAAA
GTTCATGCTGTCTTCtagaaatacacgctttttatataTAACTATAAgta
tatcagggtgagatttcggagtTACAACAATAGgactattgtttagaaca
ataaaaaaattaaaatattgctcaccctcagccaaagcaaagtacaccat
tcttataaaaaagcgtccATCGTAGCTGATTGTTATAGCTAATCTTACTG
CTTGCCTTGAAATTGTATTACACATAACTTAGTCCTTAGTCCAAaagctt
ttttggaaaaagttaagcCTCTTGGCACTATTTCAGAGGGCAATTAAGAA
TTGAAGGGTGCATAAGTTGTATAATTTGATTAAGTATTAGTCTTATTTTT
CCTAATGTTACTACTAATTTACATAATAATGACTTCcgatagtttccagt
tccaaagataaccgctctcccccacaggaacccaactgtcatttcggccg
aaatgaggtttgacggttaccaatttttagagggagcacgctgcgacgga
gagcgctgaaattttgcacacacacccttgagaataaactctattggctt
ccaatagtttccaattccaaaggtagtcgcaaaaacttcaaaacgcaaat
ttgagaatatcaaacaaatatcaaacgaatatcaaacgtcaaacgtagaa
tatcaaaccaacttcaacttaatATTTGATATGCGGAACTGAGTCAATAG
GTCGTCGTGTTCTctcaaatgactttttttttcttttcaatcatgcatct
ctttgaaaaaaggtcaaaTCCTGCCTTACTGTAGGTAGCTTATTTCACAA
ATGTAAAGCTGATTTTAGCTATGTGTTTGCGCCATTTTCATATTTAAAAG
TAACATGGGTTGGACAGTCGGTATATATCTAAAACCATCTGGAATTTAGA
TTTTCAAAGAGTGAGTTAGGTGAAACTCAAAATTATTGCAAGTTTGAGGT
TTAAAAGATTGCTTTTTAAATATATCGGGTGTGccagaaataagttaccc
tNAAATTTGAATaaagtgttataaatgcaatttgttcttaggtggccgca
tctttttgattagctagactataaggcggtctccttccatatattttttg
tgcatatcatcacttgtatcttttttttttttgtagtgttaaaaataaat
aaatacttacttacttacttacttacctttatttgatattgtaggcagta
gaaaagagattactcaaagattgtttcataatcattcagaggaaagccta
ccttaaaatttgatgtaatactttttaattttactttattagttcaaaag
ttatgttcgtaaacctaaaatgtcaatttaaaaaaaatgtcaaaaaaggc
aAATAACGAGAGTATTAATTGATTGTAATGAATAGAGACACAAAACGATT
TTATGCATCAGGAAATGTATTTCCATTATATAAAAAGCATTTATTTACAA
GGTCAGGTATCCCTGTAAATACATATTCCATCATGTGTGAATCAAGACGA
GCTGCAACAGTTCAAACGaggcatttttctaaaaaatttcacCTTCTCCA
CCTTTCTCAACGATGATGCACACATAGAAAACTTTCGGGAACTCTtagaa
agatgttgaaaattttgtggggGTTGAAGCATTCTTCAtcttgtttatgt
ttatgagaaacagaagtaaaaaaaacaatagagatAAGAAAACATAAAGA
GTGTTACAAGGAGCAAGACTTTGtactttaatatttttgtaaaagaagaC
AGTAGTCCTTTCTCTTATAAATTGATACCcttgtttttagccttttttta
attgacattttaggtttttgaacataacttttgaactaatgaagtaaaat
taaaaagtaatgcatcaaattttaagttaggctttcctctaAATGATTCC
GaagcaatctttgaaaaatctttctgcTACTGCCTTCAATATCAAGTCAA
AGAAGGTAACTTATTTCTGGCATACCTGGTAATAATATAAATatactttt
tcttaatcaggATGTCACGTTAAATAATTGAAAACTCCAGCATCAAACAA
TGTTAAAAGAATCAATGCACACTATTAGAATTGTCATTTAGGAGAATGCG
ACAAACTTTCTTGTCCCTATATAATTTGTTAAAGTTGAAAGATTGGTTAA
ACAATGGCAAGCAAAACAAGTGCTCACTTAAATCAAATGAACTCTAGAta
gctttcttttttttatcaataggtATAAAGATGATCGACTTCAATCAACT
TGAAGACTTTTGTCCCATTTTGAAGGAACAAGCTCAATTACTAATACAAG
ATTTCATAACTGAACAAGGCTTAAACGAACAGCTATGTCAAGCTATGCTG
ACAGAATTTTCTGAATGGAATTACGATACAAAACTCATTGGAAAAGAACC
AAACAATATTCTTCTGTTTTCCTGGCAATGTTTGGAATGCCCTATTTCTA
AGACATTCATTGCTTGTTATCAAACTACGTCAAAACTGTCAAAATTGTTA
TTCCATCAAGAAAAAGCATTAGAAGTTGTTAATGCCTCATTAAACGATAA
CGAGACCTTGTTAGCATTCACAACCGTGGAATCTGCATCAAAACTCGACA
GAGATTCAACTGGACAATTTGACCACACCTTTAGCTCCTACATAGCGGAA
ATAGCACCTCAAAATCGTGTCTTTTCATTAAATATTGAGTGGAATACTTA
CCAAAAAGTACAATTTCTGAGCCACACTTTAAAATCTAAAGACAATGTAT
ACCATATGATATTTTGTAACCATAAAAACTCAATTCAGTTATATGAGCTT
CACTTAAAGCGTGCTGGTGATGGGAATATCATAATGACACAGCAACCTTC
TACCAAACAAATTGCTGGCCAGTTCTTATGGTCTATGTTTGACTCTAACA
ACCAACGGTTATATTATCTCCAACTTCTTCCCAAGGATGAAGAAGAATTA
GAGGCTGCCGCAGTCGTCACAGCAATCGATTTCAAACTTGATGGAATATA
CGAATATGTCATGAATTTCATCCTCCCCATCAAACTGCGAATGGAATTAT
TGCGTAATCGTTCTTACTACAACGTAGATCATTTTTCAAACATCATCTCA
TGTCAGACTTTCAAGATGAATATTTTAACTGAAGAGAGAGGTTCTTTTTA
TGTTTGTTTTCAACACCAAGTAACCAGCACAAAATATACAGAAGAGGAGA
GCAGTGAAGATGACCAATCTGTCATTTCAGAATCTTCCACCAGCCATGAC
TCAATCCTCCAATCCTCCGGCACCACTGACAGCTGTTTTGTTAACTATAC
CGTCATTTGTGTTCACGGAGCATATTCAGCACATTGTTCTTCTGTTCTCC
CATATGATGATGATTGTAACGAACCTCAAATTCATTTCATGTTGTTTAGT
GATTACTTACTGGCCTTCATACCAGGATCATTTCTCCATTTCTTGGACAT
GAGTTGTGAGCATGAACCAGTTCACAATCTTCTCATTCGTAGAAAATCCT
GTTTACCGAAGATGCCAATTCGAAACAAAACCGATTACAAGTTTGTACCT
TTCATGTCTGAATCCGATTCTGGAGATTCTAAAACCGAACATTTAAAGTT
GCTGGAAATTACTACTCTTTGTGTATACAACCTAACTTTGAATGCTGCGT
CGATGTACAAATTTTTCTTATCGTCAAAACCTCAGATTCGATTATCTATC
TTACATGGCTGTTTGAATCATTTCAATCATTCCAAACTGACCAAGAAAGT
CTTGGCAAGAATCTGTCAGGATCCTGCGAATTCGGATTCTTTACTGATGC
TTAAAGAATATCTGGTACTGGCACCTTATGTTGAGTTGAGGAAATCTGTT
TCATTGCTCGATATGAAAGTTTTTCCATTTACAACTCAAAGTTGTTATCG
AGGCCAGGTTGAACGTAACTCGAGTGGCCGTCGAGACgtgtatttatctt
acaaaaCTTTCAAGGAGGATTTAGTTATTCAGATCCAGAAAGTGTTTCGA
TGTTGTTTAACAGGTTTTTGGAGGACTTTATTGAAAATTATGACACATGA
GTCGCAATACCGAAATAAACGAGTCTCCTTGAGTATTTTCTACATGGCTG
GTATCGATGTAGAGGAATCAGCGATTACTTTTAAAGCAGCTCGAGGTGGT
AGGCGAAATACGTCCTTCGTTGTGATTCCCAGACCTTCTGTTGGTACTCT
TGACGATTCAACCCTCCACGGAGTCGATAAATTATCGATTGATGACAGCG
CAATCGATGAAGATCGTAAATTTAATGAGAATCTGAACGCGATTGCTACT
CAATTAATCGCTAATTACGTGAGTCGTCATTTTGGGCAAGACATGAAACC
GAGGATTGATGATTTATGCTTGAATTACATGGAGCATAGGTGTGAATCTA
TTGAGCAGTTGTGGAAAGTTGTTTTGAAGTCGCTTGACTTAAGTGATGAA
GGAGTGAGGTTTTGTACTCTCGATACTCCTTCAGATGAACTTGAACTAGC
AGCATTTCAATTGGTGGAACGGGTTAAAGTGATTTGTGACCAGTTATGTT
ATCCACAGTTGAATCGCATGAATGATTTGTTATGTTCACTAAGTTTCCGC
TCGCTTCGACGGTTTCAATTCGTACGATACGTTGACGCATGCGTTTTCAA
GGTGAATATCAACTTTGTGAGACGTGTCATCAAAGAAGTTCCAGAAAACA
ACGAGAAATCGCAATTAATTGAAATTCTTTTAGGAAAACTATCTAAGACT
GAAGTTCAGAAGATTTTATTGGAATGGAATAATCCGATCGGGCGAAAATA
TTTATCGGAATACGTTTCATGGAAAATGCCGTTCAATGAGATACACACGC
CTAACAATACGAATTTCGAACAAGTTTTCCCTAACGGAGATGAGTTTATG
CCGTTGAAGACACTGTTACATGCATTTAAAGTTCACGGGAAAACGTCTGC
CATGTTTGGTGGAAGTCGCcgagataaaaaacaaaatgatatGTTAGCGG
AGACGGCGCTATATGAAACAAATATGTTGTTGAAACCTTCCGACGAGTAA
CTCTGTTACTTTGAATTAACTTTTATTcgtatattttgtattttctcaGC
TAAATTATTGATAACCCTTGTAGCGTGTCCGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004570XLOC_004570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008100-exon-sc0000082-1491911889:89060..89289TCONS_00008100-exon-sc0000082-1491911889:89060..89289Clytia hemisphaericaexon
TCONS_00008100-exon-sc0000082-1510915933:89060..89289TCONS_00008100-exon-sc0000082-1510915933:89060..89289Clytia hemisphaericaexon
TCONS_00008100-exon-sc0000082-1575043694:89060..89289TCONS_00008100-exon-sc0000082-1575043694:89060..89289Clytia hemisphaericaexon
TCONS_00008100-exon-sc0000082-1491911889:94582..97494TCONS_00008100-exon-sc0000082-1491911889:94582..97494Clytia hemisphaericaexon
TCONS_00008100-exon-sc0000082-1510915933:94582..97494TCONS_00008100-exon-sc0000082-1510915933:94582..97494Clytia hemisphaericaexon
TCONS_00008100-exon-sc0000082-1575043694:94582..97494TCONS_00008100-exon-sc0000082-1575043694:94582..97494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:89060..97494 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.34947	3.73115	7.25003	8.55551	10.3681	7.4093	8.60686	9.39784	5.47788	6.00397	6.31314	8.51435	7.84243	7.26672	7.64017	8.65184	7.10992	7.18162	6.78027	6.64847	6.70199	7.23627	6.85229	7.61885	5.87186	6.74342	3.55397	3.81384	4.71194	4.54907
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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