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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008102 ID=TCONS_00008102|Name=TCONS_00008102|organism=Clytia hemisphaerica|type=transcript|length=875bp
TCTACGCCTTTTTTTAcggaaacaaaatttgttttgtttcttcatattta
aaaagaaaaactgctTATCTTAAAGTCTCGGAAATTTCACTTTTACTGTC
ATACTATTTCAAACTTTTGTTACCGCACTAGCCCTTTGGTGGTGAAGACC
TCAATCAATTATTTAAAAAGTAAGGAAATAAAAAAGTCGCAgcatttttg
ttttatattcAGTACGTTTTTATGTAGGTGGAATTTTTGGcttgactttt
tttataaaattgtacGGGAATTTGAATATAGAGaaagtatgtatttttta
tcTTTGGTCTACTTGCTGACTTGTTGCTTTGCATGCtgacattttatttt
gaaatttaataaattaTGCTAAGGTTCATCAAGCTCCATTTCGAATTAGC
TGCTGTCCTCCTTGCCCTGTATTTAGTTTTCCTTAGCAACCATGGTTGTC
AAGTCAGTTGCCAACGGAGATGTCCGACATATTGTTCTTTCGGTGGCCGG
TGTTTTTGTAATGCTGGTTATCATAGCTTGGGAGGAAAACGCAGTTTATC
AATCACTTACGCACGAGATGACGTCACTGGACAGGTAGTTAAAGATCGTA
TTTTGTTGAGATGGGAGCGAATTTTGAGCGTTTTAGTTTCACGACAAGAC
CGTCGGAGAAAAAGAAAGTGATTATTGGTTTTATACTGTGTCTATTTGTA
ATTATTTTAGCCGAAATTTATTAGAGAAGAAAATTGCActtattcaaaaa
aactttttagaacattttaagtaaGGTCACCCACCACCCcctagtttagg
tataaacttatttctttttttatgatttttgttggcgaaaacgtttagaa
catcccagacttagtcaaaaattgc Run BLAST on NCBI protein sequence of TCONS_00008102-protein >TCONS_00008102-protein ID=TCONS_00008102-protein|Name=TCONS_00008102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MLRFIKLHFELAAVLLALYLVFLSNHGCQVSCQRRCPTYCSFGGRCFCNA
GYHSLGGKRSLSITYARDDVTGQVVKDRILLRWERILSVLVSRQDRRRKR
K Run BLAST on NCBI transcript from alignment at sc0000082:98176..100255+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008102 ID=TCONS_00008102|Name=TCONS_00008102|organism=Clytia hemisphaerica|type=transcript|length=2080bp|location=Sequence derived from alignment at sc0000082:98176..100255+ (Clytia hemisphaerica)
TCTACGCCTTTTTTTAcggaaacaaaatttgttttgtttcttcatattta
aaaagaaaaactgctTATCTTAAAGTCTCGGAAATTTCACTTTTACTGTC
ATACTATTTCAAACTTTTGTTACCGCACTAGCCCTTTGGTGGTGAAGACC
TCAATCAATTATTTAAAAAGTAAGGAAATAAAAAAGTCGCAgcatttttg
ttttatattcAGTACGTTTTTATGTAGGTGGAATTTTTGGcttgactttt
tttataaaattgtacGGGAATTTGAATATAGAGaaagtatgtatttttta
tcTTTGGTCTACTTGCTGACTTGTTGCTTTGCATGCtgacattttatttt
gaaatttaataaattaTGCTAAGGTAAATAATCAGTTAATTATTTGAGTT
AATTACATTTGAGCTAATTTACACCctttacatccctgtctcacccggta
agatttttttaatggatatagaagaatgaagaaaatgaaaaatgccgATG
ATAATTTTTCAATTGGCTAGGGGATCTCATAGGTCTGATGCGAGGATGCG
GGATATTTCTTAGCCCCGTCGTGTTTTTTACTACTTCTTTAAGCGGGTTT
TTTATCCGTTATTTaaagcattgaaaaaatttgaaaataagacAAATTTT
GAACGATTGCCCACACTTTTTAGGCTTAATATTATACTGTTTTTGTTGAT
CGAACGTTGCCAAATTTATTTCAGTCATtttattcattcaaaatttcaga
aataacATGTTAATTTACCCTTAGGTTCATCAAGCTCCATTTCGAATTAG
CTGCTGTCCTCCTTGCCCTGTATTTAGTTTTCCTTAGCAACCATGGTTGT
CAAGTCAGTTGCCAACGGAGATGTCCGACATATTGTTCTTTCGGTGGCCG
GTGTTTTTGTAATGCTGGTTATCATAGCTTGGGAGGAAAACGCAGTTTAT
CAATCACTTACGCACGAGATGACGTCACTGGACAGGTAGTTAAAGGTAAT
TAAAGATTGATGAtgtattttttgttcttttttacgaGTGGTAACATGTA
ACGTGGAGTTGAGTTGTCTCTGATCTCATTTTTGAAACTACAATGAATAG
CGCTTCGTCGTGCAAACGTCATGATTAGtacttctctcatttgaccgaaa
ttcaatcccacaatcatTTTCGTCCTAATTGAAAAttcgtgaaagttatt
actttttctttgtaattgagcgtaatttgcgtgcaagcgtaatcaacgca
aagggtgatgggattgaatttcagtcaaatgAGACGGCATGCTATTGATT
TTCGAGACTTCGTAAGATGAGGCTCAGCATTTGCTTAGCCAGTACTTACA
AGATTTGAGCCTTGAtttgcttataagcgttatgttTATAAAAGACGTGT
AATCAAAATCTTCTAGCGAGTAAAACCATAGTTTTCAATTACCCTTGGAA
TAATAGAATTTTATTAGACTTTTTGTAGTGAAAAATTGttcatttatttc
atttaattttttctgatgaacGAAGTTTTCTTGACGTTTGACGCGGGAAA
AAATATATGTACATATTTTACTGCCATAACgcggcggtttacgggaaaga
ATAGTAGCAGgtggtagagtttggaacaaactGTACACACACATCCGCCC
CGGGCTATCCCCGTTTTTAGATTTATCcccctaaactattccctttttta
gtgatcttgtgtagacgataggatcgtctatgTTTGATCTTACTTCAAAG
TTTAGGTAAGAAGTTGTATGCTTGTAACATTGACTTTTTTCCTTCATAGA
TCGTATTTTGTTGAGATGGGAGCGAATTTTGAGCGTTTTAGTTTCACGAC
AAGACCGTCGGAGAAAAAGAAAGTGATTATTGGTTTTATACTGTGTCTAT
TTGTAATTATTTTAGCCGAAATTTATTAGAGAAGAAAATTGCActtattc
aaaaaaactttttagaacattttaagtaaGGTCACCCACCACCCcctagt
ttaggtataaacttatttctttttttatgatttttgttggcgaaaacgtt
tagaacatcccagacttagtcaaaaattgc Coding sequence (CDS) from alignment at sc0000082:98176..100255+ >TCONS_00008102 ID=TCONS_00008102|Name=TCONS_00008102|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000082:98176..100255+ (Clytia hemisphaerica)
aTGCTAAGGTTCATCAAGCTCCATTTCGAATTAGCTGCTGTCCTCCTTGC
CCTGTATTTAGTTTTCCTTAGCAACCATGGTTGTCAAGTCAGTTGCCAAC
GGAGATGTCCGACATATTGTTCTTTCGGTGGCCGGTGTTTTTGTAATGCT
GGTTATCATAGCTTGGGAGGAAAACGCAGTTTATCAATCACTTACGCACG
AGATGACGTCACTGGACAGGTAGTTAAAGATCGTATTTTGTTGAGATGGG
AGCGAATTTTGAGCGTTTTAGTTTCACGACAAGACCGTCGGAGAAAAAGA
AAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008102-exon-sc0000082-1491911889:98176..98548 | TCONS_00008102-exon-sc0000082-1491911889:98176..98548 | Clytia hemisphaerica | exon |
| TCONS_00008102-exon-sc0000082-1510915933:98176..98548 | TCONS_00008102-exon-sc0000082-1510915933:98176..98548 | Clytia hemisphaerica | exon |
| TCONS_00008102-exon-sc0000082-1575043694:98176..98548 | TCONS_00008102-exon-sc0000082-1575043694:98176..98548 | Clytia hemisphaerica | exon |
| TCONS_00008102-exon-sc0000082-1491911889:98950..99170 | TCONS_00008102-exon-sc0000082-1491911889:98950..99170 | Clytia hemisphaerica | exon |
| TCONS_00008102-exon-sc0000082-1510915933:98950..99170 | TCONS_00008102-exon-sc0000082-1510915933:98950..99170 | Clytia hemisphaerica | exon |
| TCONS_00008102-exon-sc0000082-1575043694:98950..99170 | TCONS_00008102-exon-sc0000082-1575043694:98950..99170 | Clytia hemisphaerica | exon |
| TCONS_00008102-exon-sc0000082-1491911889:99975..100255 | TCONS_00008102-exon-sc0000082-1491911889:99975..100255 | Clytia hemisphaerica | exon |
| TCONS_00008102-exon-sc0000082-1510915933:99975..100255 | TCONS_00008102-exon-sc0000082-1510915933:99975..100255 | Clytia hemisphaerica | exon |
| TCONS_00008102-exon-sc0000082-1575043694:99975..100255 | TCONS_00008102-exon-sc0000082-1575043694:99975..100255 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:98176..100255 + |
Blast
The following BLAST results are available for this feature:
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