TCONS_00008114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008114
Unique NameTCONS_00008114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008114 ID=TCONS_00008114|Name=TCONS_00008114|organism=Clytia hemisphaerica|type=transcript|length=588bp
CTCTGGCAAAAAAATGGTGGTTACGAAGCGGAGAGGCTTCAAGCGAAGGA
GCGCCACACCGAGGCCTACGGGAAgcaatgaaatcaaagtaaacAGAGAT
TCGAATCGAGTGAAAGTGTATGTTCGTGTTCGACCCTTTTCGAAAGATGA
CAAATTACGAAAAATTACAAATTCTCCTTTCAATGTATCGCAGGACGCGA
CACAGCTCCACATGTTTGCAGACGAGAAAGGTCATTCGGAGAAAACGTAC
ACTTTTGATCACGTGTTCAATACTGAAGATGATAACCAAACTGTAAGTGA
AGCGTTGACGCAGCCATTGGTTCATTCAGCAATGAACGGATTTAACGGAA
CTTTAATGGCGTACGGACAAACAGGCGCCgggaaaacattttctttgatg
tCTGAAAATGGGATCACCAAAACTATGATCGACAAATGTTTCACACAAAT
CTTCGATGATCAGAAACATAATTATAAGGTGACAGTATCTTACCTTCAGA
TTTACCAAGAGAAGATTTTCGATCTTCTTTCTGGTGTCAACACGAACAAC
AAAGCTGATTTGGCCATTCGAGAAAACCCTCGCACCGG
Run BLAST on NCBI

transcript from alignment at sc0000082:327982..331625+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008114 ID=TCONS_00008114|Name=TCONS_00008114|organism=Clytia hemisphaerica|type=transcript|length=3644bp|location=Sequence derived from alignment at sc0000082:327982..331625+ (Clytia hemisphaerica)
CTCTGGCAAAAAAATGGTGGTTACGAAGCGGAGAGGCTTCAAGCGAAGGT
AAAGACGTGTGGTTTTGTGTCTCTGTGATTCGTTTGTTTATGAAATCTTG
TCTATTGTTACCATGGCAAaataatttgtttgaaaaatgtcaTGTAGGGT
TGTCTCCAAATCATGATGGCCTGGTTTGATTGCATGCTGTTTTGTAAGGT
ACATTGACACCTCAATTAAGATAAATGTACTACAAACTGTTCTCACCTTT
CGGAACAGAGAATTGTTCAACACATGGTATGAAGTTCTTGTGTTTTAATA
TATCGATCGAACTTAAATTTCGATAACTCTAATTTTCTACATCCGTGTCT
CAGTAAGGCCCCTCATTCAAAGCGAAGTTGTTTGGCGGTAAATGGCAAAA
CTTTTCAATCTTTTGCATACGTGTGTGACCATTCATTTTGAGCTTTTATA
AAGTGCGTCAAGACAAAACTTACGTATTTTTTCTTCCGATGCTCCTTTTA
GTAATTTTTGTGATGGGAATTAGTTTCCTTTTGCGCAGCGTGAAATTAAG
ATATTTCCAAATAAAGCTTTGTCTGTAATCTTAAGACATTAAACAGATCA
GTGGTTGAACGAATCACCATAAAAAGAGAATGAatttaaagttttgaaaa
aaatattcctgaatgtttttaagattttgtaaGAGGATCCGGAACACctg
taatattttgaaaaaaaagctcTGGTCTTGCTCGTCAAACAAAGCAATCT
TTTCTTGGTCTTGAAGAAACTTATCTTGTCATATCAGAATGAAGGGTTTT
ACTTTGCTCTGAGCGTCACAGTATTACAGcgaattcattttattttaagc
tttttagaCTTTTTGTTGAATGCCTTGTATAACCGGTAGCATTTACAATT
AATTTAATCTCTCTAAGTaatttttcgtcattttttctTCTGTGGCATAT
ATATGGCACTCGAAAAGTCGCTTTaacttttaaatgatttttgatgTACA
GTTTGTTTAAATGTGGATAAGAAGATTTCGTGAAGTTTTAAAGGAAAGGT
CAAGCTCGTTAACTACTTGAAAGGATCATCATtattaaaatattatcttt
ttGAAGGAGTCTACAGTTTTGTTTTCGTGGATGGTGAAGAGATTTTCGAT
ATGGTGTACACTAGCATTGAACAGTTTATGCAGTAATATTACTTTCAAAC
TtcaacaaattttctttccttcttttcgtctacttttaatCTCCATCGTT
Gtagttaaccctttaagtgccgatgtcgtatatatacgacatgggctata
taggagggcgaagccctcctgtaatgccgtAATTGatttagaaatcgtta
tttttggccgaactcgtaggaattagattgtcctttatggtcaagcaaaa
aaaatttcaaaagtgagtctttccagcgagattttaagcaaaaaagtcaa
aaaaatgcaaaaaaatgacaaaaattcacttttttgagattctgaccgtt
tttgactagttttggtcaacgagtgatccaagaacctccaaatttggccc
tgttttactttattctgtcttctagtgaatcgatttgaagttttaccact
gggcacctttccatcagttcagtcaggtccgcgcagcgggcctgactgct
ttaattccctaacctacccccccctggccgccgcccaccccgcccttcct
aaatcgggcggcgccgaaggcgcctaaaagaaagaggagactctaagcta
tccaacgagctatatacgagcttctaattcattCTAGATCagaagatata
agcccttaaattttgaactagcaattttaaaaaaaaaacttagaaaaaag
gaccctggcactcaaagggttaacaaGAAGAAGCTTCAAGGATCCAATTA
CTTGACCTTGCTCGTTCATGAATTTGTATCACAATTCAAGGATGAAGAAC
TTTGTTTTGGAACGGGGAATGGTTTTAACTCGTATTCCCAAAAAACTTat
catgaaaaaattgtatttcatttAACAGGAAATTTATCTTGTTCTTTCAG
GAGCGCCACACCGAGGCCTACGGGAAgcaatgaaatcaaagtaaacAGAG
GTGAGACTTCAAATATTCAGAATTTCTAACCATCATTGATTCATTGGCTT
GTACATGATAGTCGCTACcttctttgatgtttttttttatctatgaGACC
AAGTTGCAATTTCAATTGAATGTACCCCTATCTCAGTCCTAGTGGAAATT
TTCTCGTAGCTGGGATGGAAATTCTATCCCCACTCCACACTCAAAAAACC
CAGTAGATAGCTTTTAAGTTCAAGTTTTCCCAGTAAATTTCATCTCCGTG
GGAATTAAATTGCAGGGTATTTTTCAACCAACcgggaacaaaatttttga
cataTATTCCAGTATATGTTTGAATGGAAGGACTGGATGAATTGATCCAC
CTTTTGCTTTCCATTTCAGATTCGAATCGAGTGAAAGTGTATGTTCGTGT
TCGACCCTTTTCGAAAGATGACAAATTACGAAAAATTACAAATTCTCCTT
TCAATGTATCGCAGGACGCGACACAGGTAGGTTTCCATTTCTTGTACACT
GGTCTAAACAATAAGAATCAGAGGCTTCAAAGTTGATCAACTTGGAAGAC
AAACTAAAGATATGTTCATCAAGGACAAACAAGCGAGCGAACTTGTCTAG
GTATCACTCATAGAACAGCTTCAATCAATAACTTGCTCTCATATATTAAC
TTTAAGTTTTAtccctttcttctcttttcttcATCCAGCTCCACATGTTT
GCAGACGAGAAAGGTCATTCGGAGAAAACGTACACTTTTGATCACGTGTT
CAATACTGAAGATGATAACCAAACTGTAAGAAACCACCTAGCCTCGTTCT
CATGTGAAGTTCTTATGACCATGTCGTGAATGTCATGTTGTGAATGTTTT
TACATTCTTCAATATTGTTGTAAATTCGGTAATGGGATTTAAGGAGGGAT
GACAATTAGAGCCTTTACTTGTACGCAAATCTGAACTTATCAATTCGTAA
TCGAATATAATCAATCAAAGTTAATCTTGCATTCTTAGTAAGATAAGTGA
CACTTTTTGTAAAACCACCTTCTCAAGTGACTTCATCTTTTTTACTTAGG
TAAGTGAAGCGTTGACGCAGCCATTGGTTCATTCAGCAATGAACGGATTT
AACGGAACTTTAATGGCGTACGGACAAACAGGCGCCgggaaaacattttc
tttgatgtCTGAAAATGGGATCACCAAAACTATGATCGACAAATGTTTCA
CACAAATCTTCGATGATCAGAAACATAATTATAAGGTAACTTTCTGAGCT
CTCATTCActgttttgagaaatttgtcTTTCGCCTTTAATTTTTCTGTCA
TTCACGTTTATACTTGTGCTGAAATTTGGAATACTCTGCCCTGAATACTG
AATACTCTGGTACTGTATGTATGTACACATTCACAACTTTTAGATGAGAC
ATATATtccatttttatgattttcgtTGCTTCAGGTGACAGTATCTTACC
TTCAGATTTACCAAGAGAAGATTTTCGATCTTCTTTCTGGTGTCAACACG
AACAACAAAGCTGATTTGGCCATTCGAGAAAACCCTCGCACCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004576XLOC_004576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008114-exon-sc0000082-1491911889:327982..328029TCONS_00008114-exon-sc0000082-1491911889:327982..328029Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1510915933:327982..328029TCONS_00008114-exon-sc0000082-1510915933:327982..328029Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1575043694:327982..328029TCONS_00008114-exon-sc0000082-1575043694:327982..328029Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1491911889:330032..330081TCONS_00008114-exon-sc0000082-1491911889:330032..330081Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1510915933:330032..330081TCONS_00008114-exon-sc0000082-1510915933:330032..330081Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1575043694:330032..330081TCONS_00008114-exon-sc0000082-1575043694:330032..330081Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1491911889:330451..330557TCONS_00008114-exon-sc0000082-1491911889:330451..330557Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1510915933:330451..330557TCONS_00008114-exon-sc0000082-1510915933:330451..330557Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1575043694:330451..330557TCONS_00008114-exon-sc0000082-1575043694:330451..330557Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1491911889:330770..330856TCONS_00008114-exon-sc0000082-1491911889:330770..330856Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1510915933:330770..330856TCONS_00008114-exon-sc0000082-1510915933:330770..330856Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1575043694:330770..330856TCONS_00008114-exon-sc0000082-1575043694:330770..330856Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1491911889:331131..331316TCONS_00008114-exon-sc0000082-1491911889:331131..331316Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1510915933:331131..331316TCONS_00008114-exon-sc0000082-1510915933:331131..331316Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1575043694:331131..331316TCONS_00008114-exon-sc0000082-1575043694:331131..331316Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1491911889:331516..331625TCONS_00008114-exon-sc0000082-1491911889:331516..331625Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1510915933:331516..331625TCONS_00008114-exon-sc0000082-1510915933:331516..331625Clytia hemisphaericaexon
TCONS_00008114-exon-sc0000082-1575043694:331516..331625TCONS_00008114-exon-sc0000082-1575043694:331516..331625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:327982..331625 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.142133	0.527361	0.384516	3.54292	0	2.1782	2.86641	1.25328	1.34741	1.01219	0.679029	1.70006	6.17323	0	1.75977	0.227147	0.593657	2.01397	1.2962	0.962719	0	0	0
Blast
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BLAST of TCONS_00008114 vs. Swiss-Prot (Human)
Match: KIF14 (Kinesin-like protein KIF14 OS=Homo sapiens GN=KIF14 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.689e-21
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 2 
Query:   68 TGSNEIKVNRDSNRVKVYVRVRPFSKDDKLRKITNSPFNVSQDATQLHMFADEKG-----HSEKTYTFDHVFNTEDDNQTVSEALTQPLVHSAMNGFNGTLMAYGQTGAGKTFSLM---SENGITKTMIDKCFTQIFDDQKH--NYKVTVSYLQIYQEKIFDLLSGVNTNN--KADLAIRENP 580
             G + +KV  ++++V V VRVRPF+K +K+ K +   F   ++ T  H   D K      +    ++FD          TV E L  PL+  A  GFN  L AYGQTG+GK++++M    E GI     +  F+Q+   Q    +Y + +S+ ++Y EKI DLL   + N   K  L +RE+P
Sbjct:  347 AGKDPLKV--ENSQVTVAVRVRPFTKREKIEKASQVVFMSGKEITVEH--PDTKQVYNFIYDVSFWSFDECHPHYASQTTVYEKLAAPLLERAFEGFNTCLFAYGQTGSGKSYTMMGFSEEPGIIPRFCEDLFSQVARKQTQEVSYHIEMSFFEVYNEKIHDLLVCKDENGQRKQPLRVREHP 525
The following BLAST results are available for this feature:
BLAST of TCONS_00008114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KIF141.689e-2133.88Kinesin-like protein KIF14 OS=Homo sapiens GN=KIF1... [more]
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