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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008115 ID=TCONS_00008115|Name=TCONS_00008115|organism=Clytia hemisphaerica|type=transcript|length=4137bpRun BLAST on NCBI protein sequence of TCONS_00008115-protein >TCONS_00008115-protein ID=TCONS_00008115-protein|Name=TCONS_00008115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1172bp FVFVDGEEIFDMVYTSIEQFMQSATPRPTGSNEIKVNRDSNRVKVYVRVRRun BLAST on NCBI transcript from alignment at sc0000082:329097..337552+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008115 ID=TCONS_00008115|Name=TCONS_00008115|organism=Clytia hemisphaerica|type=transcript|length=8456bp|location=Sequence derived from alignment at sc0000082:329097..337552+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000082:329097..337552+ >TCONS_00008115 ID=TCONS_00008115|Name=TCONS_00008115|organism=Clytia hemisphaerica|type=CDS|length=3519bp|location=Sequence derived from alignment at sc0000082:329097..337552+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008115 vs. Swiss-Prot (Human)
Match: KIF3B (Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 4.671e-62 Identity = 143/383 (37.34%), Postives = 202/383 (52.74%), Query Frame = 3
Query: 114 RDSNRVKVYVRVRPFSKDDKLR---KITNSPFNVSQDATQLHMFADEKGHSE---KTYTFDHVFNTEDDNQTVSEALTQPLVHSAMNGFNGTLMAYGQTGAGKTFSL------MSENGITKTMIDKCFTQIFDDQKHNYKVTVSYLQIYQEKIFDLLSGVNTNNKADLAIRENPRTGVYVDNLTDYVVRSPSEVLQYIANGKKKLVFAETKMNRTSSRSHAVLQMVIERTMKDDVTGVDKQDEQTKTPSQDIANPNQDDSELDLNAFGKDVIIRGKIHICDLAGSERIKRTGASGDRLNEAQHINSSLLELGNVIQALADDSKKHVPFRNSVLTRLLQESLGGNCKTSLIVCVSPSTRDQQETKCTLNFGSRAMKVTNTAYVN 1226
+ S V+V VR RP + +K K+ + + Q + + + KG + KT+TFD V++ + + +PLV S + GFNGT+ AYGQTG GKT+++ + G+ D FT I Q Y V SYL+IYQE+I DLLS T L ++E P TGVYV +L+ +V +S E+ + G + T MN SSRSHA+ + IE SE+ L+ G++ I GK+++ DLAGSER +TGA G+RL EA IN SL LGNVI AL D H+P+R+S LTRLLQ+SLGGN KT ++ V P++ + +ET TL + +RA + N VN
Sbjct: 5 KSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVK-----NPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR---LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIE------------------------------CSEVGLD--GENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVN 347 The following BLAST results are available for this feature:
BLAST of TCONS_00008115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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