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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008117 ID=TCONS_00008117|Name=TCONS_00008117|organism=Clytia hemisphaerica|type=transcript|length=1153bp
TTAAAAAGTTGcatcaaacattttcatttgtGTCGAAAAACTTTCGCCTC
TTCATTGAGCAAATATTGAGTTCAGGTgacaaaattttgtttgctGTGAA
AAAAGAAATCTAATTTCGTAATTCacatgaagattttttcgaatGAAGTT
TTTTTAGTCTGAGTTGATACTGAGGTTGAAATGGGTCGTAGTCGTTGGCA
cttgtgttaaaaaaaattacttggaTTTGTCgcttaaactttttttatat
aaaatggaTTTTCGTCGTATTTTAAATTATATTTGTCAACTTTTATGGCT
AGTACAAGTTAATTACCACACAACTCAGGGAAAACCTTCCACAATATTGA
CCAATCAGAGAGCAGAACCAACAAAGATCAACCAGATCACCACGCCCATC
GAACCGAGTCGTCCAAAAAGTCATGAACAACGAAAGAAGAACACAAAAGG
GAAGAAAATTCCACTTGTCAAGGAATTTCCACTTCAGCATTTGATCAACA
TTGGACTCACTTCAAATGAAGCAAATACATTCATCCGCGGAAAAGTGTTG
AAAGGGAAGTCTCTAGAGGTTCAGTACGAACGAACGCGAGAAAATGATAT
GAACGAAATCGAGGAAGGAATATTCTTCACGCAAAATCAACTCAAACTCC
TCATCAAGAATAACACATCGAAGAAGAAGGAACTAAGAGtccgaaaaatg
aaaaagagaaCTGTTAGACGGAAAGTTTTATCCAAGGAAGATTTGATGAG
ACGGCAACTTGGGTTCATTTAAATCTGTTGTTAGTTTTGTTTTATGGGAT
TGTTATTTAAGCATTTTTTGGTAACAAACATCGTTAAATTTTTCTAAGTT
ATCATTGTTCCTCTTCAAGCCCCTCCcaactaaatttaaaaatagaCCAT
GGTCAGGAAAAAAATAACCAAGAAAAATATTCGTTGAAGGATAAATTATC
TTGGTTTTCGTTTTATATATcactaaaattgaaaatgcaCAACAAAATTC
tacataaaaaaatattcagaGCGTAAAGATGTTCTAGTTAGTTTctcata
ataaataaattaggtataattttctttttcaaattataaaaacttCTACA
CATTTAATTTATACATTCTAAtttaatttgataatttttaaaataagctA
AGT Run BLAST on NCBI protein sequence of TCONS_00008117-protein >TCONS_00008117-protein ID=TCONS_00008117-protein|Name=TCONS_00008117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MDFRRILNYICQLLWLVQVNYHTTQGKPSTILTNQRAEPTKINQITTPIE
PSRPKSHEQRKKNTKGKKIPLVKEFPLQHLINIGLTSNEANTFIRGKVLK
GKSLEVQYERTRENDMNEIEEGIFFTQNQLKLLIKNNTSKKKELRVRKMK
KRTVRRKVLSKEDLMRRQLGFI Run BLAST on NCBI transcript from alignment at sc0000082:366279..367835+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008117 ID=TCONS_00008117|Name=TCONS_00008117|organism=Clytia hemisphaerica|type=transcript|length=1557bp|location=Sequence derived from alignment at sc0000082:366279..367835+ (Clytia hemisphaerica)
TTAAAAAGTTGcatcaaacattttcatttgtGTCGAAAAACTTTCGCCTC
TTCATTGAGCAAATATTGAGTTCAGGTgacaaaattttgtttgctGTGAA
AAAAGAAATCTAATTTCGTAATTCacatgaagattttttcgaatGAAGTT
TTTTTAGTCTGAGTTGATACTGAGGTTGAAATGGGTCGTAGTCGTTGGCA
cttgtgttaaaaaaaattacttggaTTTGTCgcttaaactttttttatat
aaaatggaTTTTCGTCGTATTTTAAATGTAAGTATAAAATAGCCTACTTT
GAAGGATGCCTCAAAATTCTACATTTTGTAGCAGAAAAATGCTGTAGGGA
GCCTACAAATAATCGACCTTTTCTTGATTTCAGTGCCTTTCACGTCGGAG
TCAgtttaacttttctttttcctcACTTTGCAGTATATTTGTCAACTTTT
ATGGCTAGTACAAGTTAATTACCACACAACTCAGGGAAAACCTTCCACAA
TATTGACCAATCAGAGAGCAGAACCAACAAAGATCAACCAGATCACCACG
CCCATCGAACCGAGTCGTCCAAAAAGTCATGAACAACGAAAGAAGAACAC
AAAAGGGAAGAAAATTCCACTTGTCAAGGAATTTCCACTTCAGCATTTGA
TCAACATTGGACTCACTTCAAGTAAGGCCTTTGCTATCTTAAAATCTGTG
ACAACGAGTACGTATATTCAATACGTGGCTCTAATCCATGAGATCTGTTT
AGTTACAATACGGCGAATATACACGATTTCAATACTAGAAGTATAAACCA
TAAGCCACAATCTTTGAGTATTTTCCGTAACATTTCTGTTACAACAGAAC
ATAGGAACCAACGAAAGTCTCTCTATGATGCTTTTCGTAACTCATCACTT
ATTGATTTACTTTTTGTAGATGAAGCAAATACATTCATCCGCGGAAAAGT
GTTGAAAGGGAAGTCTCTAGAGGTTCAGTACGAACGAACGCGAGAAAATG
ATATGAACGAAATCGAGGAAGGAATATTCTTCACGCAAAATCAACTCAAA
CTCCTCATCAAGAATAACACATCGAAGAAGAAGGAACTAAGAGtccgaaa
aatgaaaaagagaaCTGTTAGACGGAAAGTTTTATCCAAGGAAGATTTGA
TGAGACGGCAACTTGGGTTCATTTAAATCTGTTGTTAGTTTTGTTTTATG
GGATTGTTATTTAAGCATTTTTTGGTAACAAACATCGTTAAATTTTTCTA
AGTTATCATTGTTCCTCTTCAAGCCCCTCCcaactaaatttaaaaataga
CCATGGTCAGGAAAAAAATAACCAAGAAAAATATTCGTTGAAGGATAAAT
TATCTTGGTTTTCGTTTTATATATcactaaaattgaaaatgcaCAACAAA
ATTCtacataaaaaaatattcagaGCGTAAAGATGTTCTAGTTAGTTTct
cataataaataaattaggtataattttctttttcaaattataaaaacttC
TACACATTTAATTTATACATTCTAAtttaatttgataatttttaaaataa
gctAAGT Coding sequence (CDS) from alignment at sc0000082:366279..367835+ >TCONS_00008117 ID=TCONS_00008117|Name=TCONS_00008117|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000082:366279..367835+ (Clytia hemisphaerica)
atggaTTTTCGTCGTATTTTAAATTATATTTGTCAACTTTTATGGCTAGT
ACAAGTTAATTACCACACAACTCAGGGAAAACCTTCCACAATATTGACCA
ATCAGAGAGCAGAACCAACAAAGATCAACCAGATCACCACGCCCATCGAA
CCGAGTCGTCCAAAAAGTCATGAACAACGAAAGAAGAACACAAAAGGGAA
GAAAATTCCACTTGTCAAGGAATTTCCACTTCAGCATTTGATCAACATTG
GACTCACTTCAAATGAAGCAAATACATTCATCCGCGGAAAAGTGTTGAAA
GGGAAGTCTCTAGAGGTTCAGTACGAACGAACGCGAGAAAATGATATGAA
CGAAATCGAGGAAGGAATATTCTTCACGCAAAATCAACTCAAACTCCTCA
TCAAGAATAACACATCGAAGAAGAAGGAACTAAGAGtccgaaaaatgaaa
aagagaaCTGTTAGACGGAAAGTTTTATCCAAGGAAGATTTGATGAGACG
GCAACTTGGGTTCATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008117-exon-sc0000082-1491911889:366279..366555 | TCONS_00008117-exon-sc0000082-1491911889:366279..366555 | Clytia hemisphaerica | exon |
| TCONS_00008117-exon-sc0000082-1510915933:366279..366555 | TCONS_00008117-exon-sc0000082-1510915933:366279..366555 | Clytia hemisphaerica | exon |
| TCONS_00008117-exon-sc0000082-1575043694:366279..366555 | TCONS_00008117-exon-sc0000082-1575043694:366279..366555 | Clytia hemisphaerica | exon |
| TCONS_00008117-exon-sc0000082-1491911889:366712..366949 | TCONS_00008117-exon-sc0000082-1491911889:366712..366949 | Clytia hemisphaerica | exon |
| TCONS_00008117-exon-sc0000082-1510915933:366712..366949 | TCONS_00008117-exon-sc0000082-1510915933:366712..366949 | Clytia hemisphaerica | exon |
| TCONS_00008117-exon-sc0000082-1575043694:366712..366949 | TCONS_00008117-exon-sc0000082-1575043694:366712..366949 | Clytia hemisphaerica | exon |
| TCONS_00008117-exon-sc0000082-1491911889:367198..367835 | TCONS_00008117-exon-sc0000082-1491911889:367198..367835 | Clytia hemisphaerica | exon |
| TCONS_00008117-exon-sc0000082-1510915933:367198..367835 | TCONS_00008117-exon-sc0000082-1510915933:367198..367835 | Clytia hemisphaerica | exon |
| TCONS_00008117-exon-sc0000082-1575043694:367198..367835 | TCONS_00008117-exon-sc0000082-1575043694:367198..367835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:366279..367835 + |
Blast
The following BLAST results are available for this feature:
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