TCONS_00008127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008127
Unique NameTCONS_00008127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1895

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008127 ID=TCONS_00008127|Name=TCONS_00008127|organism=Clytia hemisphaerica|type=transcript|length=1895bp
NGTATCTTAGTATTGCTACGGGATTATTATTTAGCTATAACACTGGGATC
TCACGCTCCTCATTGTCCCgactgtttatcaaattttcttACTGGAAGAG
CTGAGCttctcaagtaaaaaaaaccaACATCATCAATCAGGAATTGTaTA
TTTAAAGATGAACAGATAAACCATGGGAGCAAACACTTCATCGCTTGAAC
AGGACATTGGTCCGGTCAATGAACATTTCTTTGGTTTGATAAATtttGGA
AACACTTGTTACTGCAATTCAGTGCTGCAAGCCCTCTTCTTCTGCCGTCC
GTTTCGTGAGAAGGTTTTAGCTTACAAGCCGCTGAGTAAACGCAAGGAGA
ACCTTCTGACTTGTTTGGCTGACTTGTTCAATAACATTGCCACTCAAAAG
AAGAAAACTGGCGTTATTGCACCCAAGAAATTTGTAACCCGACTACGAAA
AGAAAATGAGCTCTTCGACAATTACATGCAACAAGATGCACATGAATTCT
TGAATTACCTTCTCAACACCATCGCTGAAATATTACAAGGTGAGAAGCAG
CGTGAAAAGGAGAAGGATCGCGAAAGAATGGGTAGCGTGAGTAGTGTGAG
CAGTAAAACAAGCGCTAGCTCAGGTTATTCATCAGCTACCATGCACTCGA
CATTTAAGACACCTCCTGAACCGACTTGGGTGCATGATATCTTTGAAGGG
ACGCTCACCAATGAAACAAGATGTCTTTGCTGTGAAACCGTGAGCAGCAA
AGATGAATCGTTTTTGGATATCTCAGTTGATGTAGAGCAAAACACCTCCA
TTACATACTGTCTCAAaaaCTTTTCGTGCACAGAGACGCTGTGTAGCGAA
CAGAAATATTTTTGCGAAACTTGTGGAAGCAAACAAGAGGCTCAAAAGAG
GATGATGGTGAAAAAGTTGCCACAAATTCTTGCGTTGCATTTGAAACGAT
TCAAATATGTGGAACAGCAACAAAGATACACAAAACTCTCACATCGGGTC
ACTTTCCCATTGCAACTACGTCTCTTCAACACTtCGGACGATGCAATCAA
CCACGATCGTTTGTATGATTTGGTGGCCGTCGTTGTGCACTGTGGAAGTG
GTCCAAATCGTGGTCATTACATAGCAATCGTTAAAAGTCATGGCTTCTGG
CTACTTTTTGATGACGACATTGTGGAAAAAATCGAATCACATTCATTAGA
GGACTTTTTCGGGCTGACCACGGATGTACAAAAGAATTCCGAATGTGGAT
ATATTTTGTTCTATGAATCACGGAAAGTGTGAACACAGATGCATAAACAT
TCTTGCACAGCGCTAGTCGCTACATTTACTAAAGCTCCATGTGAAAGCCT
GGAAATGAATGTACAATACAAACTTGATGTGTGATGACTGTCCACACTGA
AAGAAATTATGATTGAAACCGATGAGGGATTTGAAATGAATTCCGAAGAG
AATGGAATCAAAGATCGAAAACAattcaataaaaacttttctctGCTTTT
GTAAAGTCTCTTTTTAATTCAGTAAAACAATTCGAGCTTTCGTAGGTTcg
cacgcttttttataaaaataatttcagacaAAACCTAACGGCAAATTCGG
GCAATTGTGGCTTCATATTTCAAGAGATGACAGAGAGAATAATGacctgt
tcttataaaaaagcgtggaCTTTCAAACattgtaaataaaaaatgagtAC
GTAGTATCTAGGAGACGGGAACAGGTGGTGAGCCACAATCACTGGTTGCC
AAGATACCATGtatgaaaattatatatttatAAACTGATGCAATTCAAAG
AATAATGTTACGTTTTTACAAAAACCATTCTTTCTTTCttagatattttg
aaattgtattcaCTCTAACATGCTATTGAGCACTGTGTTAATGCC
Run BLAST on NCBI

transcript from alignment at sc0000082:483431..503101+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008127 ID=TCONS_00008127|Name=TCONS_00008127|organism=Clytia hemisphaerica|type=transcript|length=19671bp|location=Sequence derived from alignment at sc0000082:483431..503101+ (Clytia hemisphaerica)
NGTATCTTAGTATTGCTACGGGATTATTATTTAGCTATAACACTGGGATC
TCACGCTCCTCATTGTCCCgactgtttatcaaattttcttACTGGAAGAG
CTGAGCttctcaagtaaaaaaaaccaACATCATCAATCAGGAATTGTGTA
GGTatactttttgttattttgatttgaaatatgACAATAATTAGCTAAAC
TAAAACAGAAAACTCCTGAAAACTCCCTGACAGTTACATCATCAATATGC
CTTGTTTAAAAGTAATCACGAaaaaaaggacgcgaaaaaaaaaaagacat
aagtgtgagaacagagtaatcaaactcgttagaaaaagtaccattaaaAG
TcctaaaaaatcaacctgaataaatgcaatcgaaattccaaaGAACTTcg
taattccccaaacaacattacattactatgtcaaactacatattttacct
accccaaatatttaggaggctgagttttaaacgaatcgtcaagttgaaac
gaaagattaatgtatcaaggtctgttttatttaccccctggtgacttaac
aaaagagacttaactcgatgttacaatccaattattgaaagtttgtagac
atacgttctctgattgcgcaattttcatattgacattttcaaggcatttt
gatgtaactgcctgaCCCCCGCCCCCGGGCGCCAGGGGCATAGACTATGC
CATCATAGTGTTGGAAGACAGttttagaaaaggttagaaaaagtTATCTA
AATAAAATGGGATTAAAGGAAGCTAGTGAAACAATGAGAAGGAGGCTTGA
AATGATTGATGTTGGTAGTAACTTGGAAGGAAGAGAACATGCAGACTATG
TGAGGAGAAAGAAAGCACTGAACACATGATAGCATGTAGGAGTACAACAG
GCAGAACAGCTCCTGCCGAATTGACAGTAGCATGCTTGAAGGAAACGGAC
GATCTTAACATCATTAGACAAACAAATCAATTTCTAAATCTCCAAATAGA
AAAAAGAGACAAAGAGGAAAAACTAAAAGAAACATTCTTGTAAacaaatc
aaaaggaaaaaaaagaaaagaaacaaatgTCTTGCACCTTATACGTGATT
TAGCGGAAGAAGGTGCTTGTTGATGTAAAACTGTCAACAAAGAGGACGAT
TATAAGATTCAAGATTCAAGATTCaagttagtggaagtacttcgtttcga
atagaccttttcgtctttccatccgccatattgaattgtatgcaaaaatt
atggtggccgaattgctgtggtgaaattaccttagaaagtatgcaaaaca
tatgcaaaaagaaagtattaatgtaaaacttacatgcataattggcatta
tattaaagtgtaatcttgtagaagaaagattaaatttgcttcttttgaaa
actagaaataatcaaattcgctcgaatatcttagaacaagcacttcaaaa
aaccataacattagacataaactcaagctgaaaaagcACCCGCGAAGGAC
AGAcagctgacggtaaattattctcctgggaatagaaccgtcagacgatc
aaatcaaaacattgatttgaacccgctgaatgtgtgacgtcataattact
gctttcagtttgcgtgttttgagtCAATGGCCATCTCAGCTCTGATCCAA
ACATTGTTGCCAATGGCTTTCAATGACTTTTTTACATCTATTGCAGATAC
TGTCCGTTCCAAAATTGGTCCAACCAATCGTCACTTCTCTCACTATCTCA
AAAATCGCATTAGGAAAAAAACTTGGAGTTGAACGTTGTTCTCCAATTCT
AGCCACTCTTTTTAATTCAACAATTAATACTGGGGTCTTTCCCCATGAAC
TTAAGCTTGCAGATATCATTCCATGTCATAAAAAAGATAGCGCCTTGGAA
AAGTCAAACTATAGACACATAAGCTTGTTACCTACAATATCTAAAGTCTT
TGAAAGACTCATGGTAAATCAAATGCTGCCTTTCTTAGACACTTTCCTCT
CGAAATTTCTTTGTGGATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CCTCAAGGCTCAGTATTAGGACCTAttttatttaatgttttcattaaTGA
TATGTTTATCATATTTAATGAAGATGACATCTGTAACTTTGCTGAAGATA
ACACTCTTTCGGAGGCAGGAAAAACGCTTGAAATCGTTTACACTATGCTC
TATCCAAAAAAGCAAAACTAATGTTAGATTGGTATGCACAAAATTCATTG
GTGGCAAACTCAGCAAAGTTTCAAGTCATCTTCCCAGGTAGTCCAAAATG
TAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTTGCAAAAGGCTTTCGA
TACTGTTGATCATTCTATTCTAATTTCAAAACTCGACCACTATGGGGTTA
GAGGAAAGGCTAATGACTGGTTCAGATCGTATTTATCTAACAGATCCCAG
TTTGTCTCTGTTCTAGGACCTCTCTTATTTTTAATCTATATTAATGATCT
TCACAATGCAATCTTTTCaagtgaaacttttcatttcGCTGATGATAccc
atattttacattttaatgatgAGTCAATCGTGACCTAAGATCCCTCCAAA
CTTGGCTCAAAGGCAATAAAATATCCCTTAATGCtggaaaaacagaattt
ttaattttcagacactgtcgaaaaattcttccttttgtcttttttcttaa
aattggaggtaagaaaatttttcaaagttcaaatatCAAATAGCTTGGCG
TTTTGATTGACATGCACCTCAACTGGAAAGCCCACACCACATCTTTATCA
GCTAAACTTGCCAGAGCAAATGGTATTATATCTAAGCTCAGGCACTATGT
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NNNNNNNNNNNNNNacttatttaattgtttctttacagaaaaatgttctt
tatgatgatgcccaaaacttagcatcgtttgatttccaaaaaaatcatcc
tttgaatccggaactccttataaatcgccggaacagcctaaaaaccggcg
taaaacggttttccttcattttttcaacttatactcgacagattttcatg
atttcttgcacaatgatgtaaaatggcaatgcccaaaattatacattact
tccattaaattctaattattcgttttataaataggtaggtccattaaagt
attacttNCAATGcccaaaattatacattacttccattaaattctaatta
ttcgttttataaataggtaggcccattaaagtattacttgtttaaCTTTA
TTCAGCTCGATGCTGAAGACGAAAACACTCAAAGTACCAGAGGAGCATGT
TTGAAACTACTTTTTGTTCCCTCCTACAACACCATTACCTNNNNNNNNNN
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NNNNtaaaaaaaattcttaaaaaatataaatatttataaataatttaCAA
AGTGTTATAAACGCAATCTGTACTTAGGTGGCCCCATCTTTTTGATTAGC
TAGACTGTAAGGCGGTCTCcctccatatattttttgtgcatatcatcact
tgtatcttttttgtagtgttaaatggtaaataaatacttacttacttacc
ggttagtgtaaaacgcaggtcacaggtcgcaggtcacaggtcacaggtca
gtgatgacaggttaactctaatcaatgtcattgcagaggagaatgtttgg
aaaacacaaagaattatcaaaaacataattctcaagcaatttcatccata
taaaaccttttcaaacatcaaaatttaaccatgtgcttttatcgatcttt
cgcagtttgcgccgtgtataacgcagaccagaaaatatttgaaaccatat
tatacgtataacaggtatattacatattgtaatgtttgtaatgttatatg
atggtttacatataataaaacccCGGAGGGGGGTCTCTACCTTCGCAGAG
AACTCACGaccttctgattggtgtaattttatatccagccataattgtta
tcatcacattcggcatgctgaatatttttggtgtttttctcttgtaagat
atgatattttgtaattctgtcaatatttttgtcaaaaattgtcattaagt
cattaaaatgacaattgaataattaattagtttcatccttctaaaaccac
tctcttagggacctcacaaacttctgattggtgccgttttatatccattc
acactatctacatcacattttgtataataaatatttttcgtgcttttgtc
ttgttaggcatcatattttatgattttgtcattatttttgtaactaatta
gtgtcactatgtcaaaattcaattggcattttataatatctaaataacat
gtattacttttttgtaatttaatgcgctatgtattgatgttatgttatgt
atatgttatgatattttttttttccggtctgcactttgttgacctgtgac
ctgtgacctgcgacctgtgacctgcgttttacactaaccgcttacttact
tacttttgaaagtttgatgtgtgtactccgtcttggtggaattctttaat
ggcatgaaaacagaatatgcaatgtctttaagaacaaatttatgAAAGGc
gtttgttgttctgtaaatatttctttttggattaagaaattccatctttt
attgttttaatgattataatatttctttataagatgcttttttgtctttt
taatctttgtgtaaacttgcatatgttttgcatattttccaactaaatCC
AACCACGGCTTTTTCGTTCCTCTATTTTTGCATACAATTCAAGATGGCGG
ATggaaaggcaaaaaggtctattgtgaagcgtctttacgtcacacaaaac
aaaagaaaatagcaacaGAACAAACACAACCATGGGGGATCGCGATTTTA
TggaaatgggaatcctcatatATCGAAATAAAGCATCTtcagaaaatttc
attcttcctcataaatgcgaaaatgaaaaacaaagaagctttcgttttct
gatcgtctttttaatctgccatgaagtgttataaaattccttatagaaaG
ACACATTCTCCTACTACGAAGAAGAGGGGCTTTAAAAAAATGAcgtagaa
aaaagttgttaaaaagtatgtcattttatcttcacaattttgtgaactAC
GTCACAAGCACGgagcgctgacttttagttttaatgaaTTGTTCCCACTC
GTTTGGTTTCTATAATGaaaagaaagtcgttattgtgaactttgaacatg
cttaaaatcgaggtacttccactaaactgtaagagcaaCGGATCTTATTT
TGGGACCAAATCAAATAAATGGCTTTGAACCCaggaaaatcattaaaaaa
caaacttcttaaGACTCCAGAAGACTTTCAGCTAGGACCCTAGGACTTAG
GAACATTTGGTGAGTTCCTGTACGTGgctgcaatcaaaaaaatcataacc
acactcataaaaaaatcacgtttgcgtctttttttacgtttttcttgcct
agacgatatagcaaacatagtaagtataagcagactgtgccttCAAACTG
TGCCTGTGCATGATGTAACTTGCGCGGCAACAAAAtcgccttctgttggc
tgatcatattgggcgttttggcgttaccaccctcaaagCAGCGGGTGCCT
TTATTATCTCACAGTCACAAcactctgtccaccattttaaatgagttaac
aatagatccaaaagggtgCCCTCATCGAGGAAGATCATTCACTTTGGTAT
CCGGTTTTgggaagtagtaatgttttcgattgttttctatggaaaatGGT
ACCGTCTGTAGGGATTCACGGAGTGGGGATGAATAAATTTGAAGCGGTCA
CAAGTGTTTGTAACATGTGTGATGataatgttcaaactgaaaattgaaat
tgaaaaaatactaaataTTGATCACAAGGAAAAAGCTTAAGTCTAAANNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGCTGAAAAAACTTAC
CAGCTTGCCTGAAGTGTGAGGCTGGAATAATCCAGGCAGTGGTGTGATAA
AAGTTAGTAAACTAAACTCATATTGATGAGAGAAAAGCTTATAGGTTATG
TGACTAAGTCTTGTTTGAAGTTGACTTAGTAAAATTTGATGTTCACTCCA
TGAAATCTCTTGTTGAACTgatgtgaaaatgaaagtccttaaattaacat
aaataaacaaattaGAATCCAAAATGGTGAACACTGAGaacagaaaaaca
ctgaaaatgcagaaaacatgagaaaaactgaaaaaccgAGANNNNNNNNN
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NNNNNNNNNNNNNNNNNNNgtcaactgctctaacttgggactatctgaca
aaacatgggacggcaattcggccaccatttcactgaacctcaaaagtcat
ttgatttgatttggcaaaatgatggagcgtttgacgtcactcgcgcgcaa
gttacacactcattatttgttaatcccatcgggcgataggcggttaggcg
gtgagagttctctaattctccaatcaggtcattttgaatgaaaacagaag
ttaaaaagggcgcgctatcagtgaaaattaacttgacatgttatgacaga
aagtatgattgataaacttggtggagttatcaaaacaaatttgttgtcaa
agagttACATAGTTACATCAATTTcgacaatttcttttggaaaaaatgac
ccTGAAAGTTTTGACTGTCAggtctttttggacctacctcggaggttcTT
TAAATTAACCGTCCGTCTGATGcaagcttttctcaggattggcacatttg
atttttcaataaaactgatgGTTCTTTTTTCACGATCTTTTCCATTATTG
CCTTAAACTACAGTCGACTTTCAATAAATCCAACCTCCTCAAATTGATTA
TCTCCATAAACTCGAACGATTTTTCCGGTCTCTTGAGGAGATTCTTAGGC
TATTCTGACTCTCTGTAACTCAAATTTCTGTAACTCGAACAATTACTGAT
TATCCCCTTGGCGTTCCAGTACTCGACTATATTACACTTCCCTACTTGCT
CTAActttaatcattaggtaggtccaatcagATGGAAGCTATTTTTACAA
GAAGTTATGTCatctaaatttcaaaatgttataATCTTTTATCAGCAAAT
TTCCAGATATGAATCCTGACGTTTTTCTTAATAGTGGTGTCCTATCTTTG
AGGATGCCAACTTCAGCTAACTAATAGAAGAATGTTCCTTCCCTGACTAT
CTGGAAATAATTTTATGCTAGGAAATGACCAAAAATTCATTATATTCTAT
AGTCATTTTATACCAGAATGATCATttaaaacttcttcaaatttcttttt
atagaTATTTAAAGATGAACAGATAAACCATGGTATGTAAAgcgtttttt
aaatttttgtttttcaaaatgactNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtag
ttccatccttctaaaaccactctcttagggtccttgcaagcttctgtttg
gtgccaaattatatccattcacaccatccacatcacattctgtataataa
atattttttgtgcttttgtcttgctaggcatcatattttatgattttgtc
attatttttgtaagtaagtgtcactatgtcaaaataggttgttNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAT
TTTTACAAGAAGTTATGTCatctaaatttcaaaatgttataATCTTTTAT
CCGCAAATTTCCAGATATGAATCCTGACGTTTTTCTTAATAGTGGTGTCC
TATCTTTGAGGATGCCAACTTCAGCTAACTAATAGAAGAATGTTCCTTCC
CTGACTATCtggaaatataattttatgCTAGGAAATGACCAAAAATTCAT
TATATTCTATAGTCATTTTATACAAGAATGATCATttaaaacttcttcaa
atttctttttatagaTATTTAAAGATGAACAGATAAACCATGGTATGTAA
AgcgttttttaaatttttgtttttcaaaatgactGCTGCTGATTTTTGAC
AAGGATTTCAAAAATCATGTTGTAATTATGTTGAATCAGATTGAAACCTA
AAattgtaaaagattttcaaaaaattatatacCTGATTTAAAGTCTCTTA
TACGATATTTCAAGAATCAACGAAGTAAGTTATGAACTAAAAGAACATTG
TGATggatttatgaaaattttattttgaggCTAAAAGAAGTTATACCCAA
ACTCTTGTATTATGATGTCATAAACATTACCTAACATTACATCATAAATC
TTTCAATTTGAAATCTTAATCTACATCATAATCCACTAAGTTCCAGTGAA
TGAAACTGCTTCATTTTAATATTTGACAAGCCACTATCCATTTGAGTCCT
AGGTTCGACTTCTCCTTTCAAGATAAATCGATAAGATTTTTCAAGGTGAT
ATGGGATTGATTTATCAggaatttttcactttctaaATTGACCTAGATTC
AAAGACTTCTGTGGATACGATAAGCTTCCCTTACTAGCTGTATCACCTAT
CatccttttttcttcaaaataccCACCAGCTTAAATGTTCCAAAGCAACA
ATACCCTTTTCAGGTTAAAACCCACCTTGTGTAAATTCAAAACAAGGCGT
TTTAATAAGATGACATGAAAATTTCCATCCTCATCCTGGTCCAGATTTAA
CTGTTTTGAGTTGAACCTCTTGATTTGAACCATTCTGTATTGTTTCTTGT
TAGGGAGCAAACACTTCATCGCTTGAACAGGACATTGGTCCGGTCAATGA
ACATTTCTTTGGTTTGATAAATGTAAGTCCTCTTATTGATATGTTTAAAG
TAGAGTCTTGCTTTCTTTTCTTGAAACAACCCACTTGTATCTATCACTGA
ATAAAATTTCTGAActattaatttttgattttagtttGGAAACACTTGTT
ACTGCAATTCAGTGCTGCAAGCCCTCTTCTTCTGCCGTCCGTTTCGTGAG
AAGGTTTTAGCTTACAAGCCGCTGAGTAAACGCAAGGAGAACCTTCTGAC
TTGTTTGGCTGACTTGTTCAATAACATTGCCACTCAAAAGAAGAAAACTG
GCGTTATTGCACCCAAGAAATTTGTAACCCGACTACGAAAAGAAAATGGT
AATCTTCAATTCATTTCAGTCAACATACATTTAAAacatataagaaccag
taaattttgactGTGACTCGCCTATTATAACACATTTCCACCACTTTGAT
TCCTCTTGGCAAGTGGcgaaatttactcattttcccCTAACGGAATTATT
TTAAGGAAATGTTCTTTAGTTCTTAGTTACGTAATCCTGTCATATACAAA
ATGGATTTGACCTTTCTTTCAGAGCTCTTCGACAATTACATGCAACAAGA
TGCACATGAATTCTTGAATTACCTTCTCAACACCATCGCTGAAATATTAC
AAGGTCCGTCTTTTATTAATTTGGCATGGGAAAATTTGCTAAGGGTCAAa
atgttttctgaatttttgacTTCTGTGAAACGTACTTCACCCTTATAGAA
GAGCTAAGAATTCCATGTCTCAGAATAAGAACCCAACTCTCTTTACACGC
TCCACCCTAATCCAACGATCCAATCCTTCAAAGAAACCTCCAACCCCTTc
gtcttcttttcttctttacttTACCCTCTAGATAGGGATTCATGCTTAGC
TCGCTTTTTTCCAGGTGAGAAGCAGCGTGAAAAGGAGAAGGATCGCGAAA
GAATGGGTAGCGTGAGTAGTGTGAGCAGTAAAACAAGCGCTAGCTCAGGT
TATTCATCAGCTACCATGCACTCGACATTTAAGACACCTCCTGAACCGAC
TTGGGTGCATGATATCTTTGAAGGGACGCTCACCAATGAAACAAGATGTC
TTTGCTGTGAAACCGTATGttgagagtttttttttttaacacgtGTCTAA
GTACGTTATAATTGAAAACTTGGAATACAAATGTTGACACAcggataaaa
aataaataagttttttttctccattagGTGAGCAGCAAAGATGAATCGTT
TTTGGATATCTCAGTTGATGTAGAGCAAAACACCTCCATTACATACTGTC
TCAAGTTTGTATTCCATTCTATTCATTCGTGAAATCCTCAGAAATCCTTA
AACCTTCGGGAATGGATGCATAATATGCACATTAAAAGACTACAATTTGT
CATAAAAATTAGATTTGCCTCTTGCATTCTTAAATTAAATTTATCCCCGG
ATCGAATGGCATGCATCtgctattaaaaaaaaaatatttcttttcagaaa
CTTTTCGTGCACAGAGACGCTGTGTAGCGAACAGAAATATTTTTGCGAAA
CTTGTGGAAGCAAACAAGAGGCTCAAAAGAGGTATAGAGATTTGTCATTC
ACTATTTGGCGCTGCCGATTTTTTGAGAAGAAGTTTACCACAACTAATAT
GTATACTCCATGGTTAAAAAGATGAACTTTCTGCCCACCACTCTTTCTTA
TTCCATTCACAGGATGATGGTGAAAAAGTTGCCACAAATTCTTGCGTTGC
ATTTGAAACGATTCAAATATGTGGAACAGCAACAAAGATACACAAAACTC
TCACATCGGGTCACTTTCCCATTGCAACTACGTCTCTTCAACACTGTAAG
TCTACTGTGATTGtctgattaaatttttttgttctaGAAACGTTGGTCAC
TTGTCTGACTTTTTCCCCTCGACAAGCTTCTGCAGAACTTTAAAACCGAA
GcgtttattttatttcaatgtttttttcgtttttttagtCGGACGATGCA
ATCAACCACGATCGTTTGTATGATTTGGTGGCCGTCGTTGTGCACTGTGG
AAGGTTTGTTCATTCTGAATAAATATTGGGGAGAAGAATGCCCAAAGACC
TTCTAACTAGGCGATGTCAAACGAACACTTTCCAACTGattcgattactg
ttcgattatATCTATTGTTCGATTGTGTTCGGTTAATTCGATAGAATTCG
ATTGTTCGATAGTGTTTGATGAatgattaagttcgattagttcgattgtt
cgttTGACATCGCCTGGATCTAAACACCATGCTCATTACGCCTTAACAgc
ttacactcttttttttataagcatacgggaaaatcgggtcgaggctcatt
ttcagccttaatttatgcttatttatatgctGAGACTtaaatttgttgat
tttctttgggttcatggaaatttcgaatttttaagtcGGAACATTGATTT
GGCTCAAAGAATGAAAGTTTTTGGTGAAAATCTTTGGTCCAAGAAAGCAC
AAACAGTTTTAAAAGCAACCTTAAAAAGGTCAGCGGTTTAGAAAAGCTGC
ACACATTTTTGCATTTCACcttggaggtatgcttagcactatgcttattt
tttttgccGAATTTGAGCCTAAGTAGCTTATAAACAATAAGAGTGTATCT
CCACAAGAACGCTAGAGTTTTTGTCTACTTTTGACTCGATCAATCTATGT
TGTAAAATTGTAATTCAATCCTTTGGAAACAAGTAGACACAAAGGAGTGA
TTGCAAAAAGTCAGATTGTTTTCAATGTTAGCGGAATTCAGTTTAAAGTA
ACGATAGCCTTAATTTCTTTTACAGTGGTCCAAATCGTGGTCATTACATA
GCAATCGTTAAAAGTCATGGCTTCTGGCTACTTTTTGATGACGACATTGT
GGAAGTAAGCAATGACTCTTTCATTCGAATCTCTTATTGTTGTTAGTGAT
TTTTTACTGTAGCGTTAAATTCATGTGTACAGTtgaccctctctaattcg
atcttcaagtgaCCAAAAATTCTCATCGAATCggagaaagattcaaatta
tagagagTAATTTAAGTCACTTGTCAGCTGAGGGAACCAATATTTcagaa
ttatagaaagattcaaatagaagaggttcgaattagagggaGTTACCTAT
GTTTGACCTCTCTGAGTTTTTTGCATCGACGACAAGATTATCTTTTAATT
ATGGAACGTTAGTAGATCTGTCTAAACTAAATGGTTAAGCTCAGGACAAA
AGTAGGCTGGATTGGTGGTCTGCGAATGTTTTTTGGTAGCGCTGCATTTG
CATGACTTCAGGTACCCACAGTAGCTTTCAATgcaaatttttcttaattt
cagAAAATCGAATCACATTCATTAGAGGACTTTTTCGGGCTGACCACGGA
TGTACAAAAGAATTCCGAATGTGGATATATTTTGTTCTATGAATCACGGA
AAGTGTGAACACAGATGCATAAACATTCTTGCACAGCGCTAGTCGCTACA
TTTACTAAAGCTCCATGTGAAAGCCTGGAAATGAATGTACAATACAAACT
TGATGTGTGATGACTGTCCACACTGAAAGAAATTATGATTGAAACCGATG
AGGGATTTGAAATGAATTCCGAAGAGAATGGAATCAAAGATCGAAAACAa
ttcaataaaaacttttctctGCTTTTGTAAAGTCTCTTTTTAATTCAGTA
AAACAATTCGAGCTTTCGTAGGTTcgcacgcttttttataaaaataattt
cagacaAAACCTAACGGCAAATTCGGGCAATTGTGGCTTCATATTTCAAG
AGATGACAGAGAGAATAATGacctgttcttataaaaaagcgtggaCTTTC
AAACattgtaaataaaaaatgagtACGTAGTATCTAGGAGACGGGAACAG
GTGGTGAGCCACAATCACTGGTTGCCAAGATACCATGtatgaaaattata
tatttatAAACTGATGCAATTCAAAGAATAATGTTACGTTTTTACAAAAA
CCATTCTTTCTTTCttagatattttgaaattgtattcaCTCTAACATGCT
ATTGAGCACTGTGTTAATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004581XLOC_004581Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008127-exon-sc0000082-1491911889:483431..483577TCONS_00008127-exon-sc0000082-1491911889:483431..483577Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:483431..483577TCONS_00008127-exon-sc0000082-1510915933:483431..483577Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:483431..483577TCONS_00008127-exon-sc0000082-1575043694:483431..483577Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:496435..496462TCONS_00008127-exon-sc0000082-1491911889:496435..496462Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:496435..496462TCONS_00008127-exon-sc0000082-1510915933:496435..496462Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:496435..496462TCONS_00008127-exon-sc0000082-1575043694:496435..496462Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:498984..499052TCONS_00008127-exon-sc0000082-1491911889:498984..499052Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:498984..499052TCONS_00008127-exon-sc0000082-1510915933:498984..499052Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:498984..499052TCONS_00008127-exon-sc0000082-1575043694:498984..499052Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:499165..499378TCONS_00008127-exon-sc0000082-1491911889:499165..499378Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:499165..499378TCONS_00008127-exon-sc0000082-1510915933:499165..499378Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:499165..499378TCONS_00008127-exon-sc0000082-1575043694:499165..499378Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:499603..499683TCONS_00008127-exon-sc0000082-1491911889:499603..499683Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:499603..499683TCONS_00008127-exon-sc0000082-1510915933:499603..499683Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:499603..499683TCONS_00008127-exon-sc0000082-1575043694:499603..499683Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:499945..500144TCONS_00008127-exon-sc0000082-1491911889:499945..500144Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:499945..500144TCONS_00008127-exon-sc0000082-1510915933:499945..500144Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:499945..500144TCONS_00008127-exon-sc0000082-1575043694:499945..500144Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:500258..500334TCONS_00008127-exon-sc0000082-1491911889:500258..500334Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:500258..500334TCONS_00008127-exon-sc0000082-1510915933:500258..500334Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:500258..500334TCONS_00008127-exon-sc0000082-1575043694:500258..500334Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:500528..500611TCONS_00008127-exon-sc0000082-1491911889:500528..500611Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:500528..500611TCONS_00008127-exon-sc0000082-1510915933:500528..500611Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:500528..500611TCONS_00008127-exon-sc0000082-1575043694:500528..500611Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:500743..500875TCONS_00008127-exon-sc0000082-1491911889:500743..500875Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:500743..500875TCONS_00008127-exon-sc0000082-1510915933:500743..500875Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:500743..500875TCONS_00008127-exon-sc0000082-1575043694:500743..500875Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:501019..501083TCONS_00008127-exon-sc0000082-1491911889:501019..501083Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:501019..501083TCONS_00008127-exon-sc0000082-1510915933:501019..501083Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:501019..501083TCONS_00008127-exon-sc0000082-1575043694:501019..501083Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:501856..501934TCONS_00008127-exon-sc0000082-1491911889:501856..501934Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:501856..501934TCONS_00008127-exon-sc0000082-1510915933:501856..501934Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:501856..501934TCONS_00008127-exon-sc0000082-1575043694:501856..501934Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1491911889:502384..503101TCONS_00008127-exon-sc0000082-1491911889:502384..503101Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1510915933:502384..503101TCONS_00008127-exon-sc0000082-1510915933:502384..503101Clytia hemisphaericaexon
TCONS_00008127-exon-sc0000082-1575043694:502384..503101TCONS_00008127-exon-sc0000082-1575043694:502384..503101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:483431..503101 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.1571	44.6368	44.4414	62.371	1.76383	1.10851	1.90098	11.0888	21.823	25.0621	1.80718	17.9768	12.3431	19.2794	0.800588	5.92331	1.56362	7.39451	1.09443	1.13124	1.14262	1.50307	1.36231	25.5527	1.76762	1.87039	0.738638	0.566059	9.43669	1.08153
Blast
[Close]
BLAST of TCONS_00008127 vs. Swiss-Prot (Human)
Match: UBP46 (Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46 PE=1 SV=1)

HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0
Identity = 272/372 (73.12%), Postives = 316/372 (84.95%), Query Frame = 2 
Query:  173 MGANTSSLEQDIGP----VNEHFFGLINFGNTCYCNSVLQALFFCRPFREKVLAYKPLSKRKENLLTCLADLFNNIATQKKKTGVIAPKKFVTRLRKENELFDNYMQQDAHEFLNYLLNTIAEILQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFKTPPEPTWVHDIFEGTLTNETRCLCCETVSSKDESFLDISVDVEQNTSITYCLKNFSCTETLCSEQKYFCETCGSKQEAQKRMMVKKLPQILALHLKRFKYVEQQQRYTKLSHRVTFPLQLRLFNTSDDAINHDRLYDLVAVVVHCGSGPNRGHYIAIVKSHGFWLLFDDDIVEKIESHSLEDFFGLTTDVQKNSECGYILFYESRK 1276
            MG N S+LE+DIGP    +NEH+FGL+NFGNTCYCNSVLQAL+FCRPFRE VLAYK   K+KENLLTCLADLF++IATQKKK GVI PKKF++RLRKEN+LFDNYMQQDAHEFLNYLLNTIA+ILQ EK++EK+  + + G+++  +                     PE TWVH+IF+GTLTNETRCL CETVSSKDE FLD+SVDVEQNTSIT+CL++FS TETLCSEQKY+CETC SKQEAQKRM VKKLP ILALHLKRFKY+EQ  RYTKLS+RV FPL+LRLFNTS DA+N DR+YDLVAVVVHCGSGPNRGHYI IVKSHGFWLLFDDDIVEKI++ ++E+F+GLT+D+ KNSE GYILFY+SR+
Sbjct:   12 MGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAE-----------------NNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQSRE 366
The following BLAST results are available for this feature:
BLAST of TCONS_00008127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP460.000e+073.12Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo s... [more]
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