TCONS_00008189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008189
Unique NameTCONS_00008189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008189 ID=TCONS_00008189|Name=TCONS_00008189|organism=Clytia hemisphaerica|type=transcript|length=1370bp
CAACGATGTTCAACTAAAAGTTCTCAAGAAATGGATTTCAAGCAACCCTT
TGGTTGATCTTTGGAAAGAGCCAAGTGCACCTGGCCACGTTGTAGACATC
CACATGCCAAAAGGAAAGATCTCATCTTTCGAGAAATTGTTGACAGCCCA
TGGAATTTCTTATAATATCATGGTCCCTGATGTGGAAGATCTTTTGAATG
AAGAAGAACTCTCCAACATGAAGAACAGCTTCTATTCTTCTTTTGACTAC
AATAAATATAACCGTTGGTCTGATatcaAAATGGAATTACAAAACTTGGC
TCGTTCTAACCGAGGAATAGTCTCTTTGTTTCAAGTTGGACGAACTTATG
AAGGAGAAACTATGATCGGCCTTAAGGTGACAAACGGTGACGGGCGATCA
AAACCAGTGGTTTGGATTGATGGAGGTATCCATGCAAGAGAATGGATTTC
ACCCGCCACTGTCATGTACTTCATGAACAAGtTGCTTACAAACAAAGCGG
ATGATCGTGTGTCAAGAGTCTTAGCCAAATACGATTTCTACTTGATGCCC
GTTTTCAACATTGATGGGTACAAATACACTTTCACGAATCGATCAACTCG
ATTGTGGCGCAAGACAAGGacaaaatacaaagaaagtaaACCACCTTATA
AAACGTGTTACGGAGCAGACCCCAACAGAAATTGGGATAGTCATTGGGAA
ACAGGTATCAACGCCAGTGACAATTGTACAACAGATTACTACAGAGGGCC
TTTTGCAGGATCTGAAAAATGTGTTGCAAACGTCCAAACGTTTCTTCGTC
AACTGAAGAACTTAACTTCGTATTGGAATATCCATGCTTTCAGTCAGCTT
GTCCTCACAACGTGGTCTTGGACGAGCGCCCTATCGAAAGATTATCCAGA
AATTAAGCGTGTTGGAGATGTTTTCGCCGAAGCCGTCAGTAAAAGATATG
GCACACATTATAAAGTTGGTCCACCTTCAAGATTTCTGTACCCAGCTTCA
GGTTGCAGTATTGATTTCGCACATGATGAGCTGAAAGTCGTCTACTCTTA
CGGTCTAGAACTGAGAGATAAAGGCCATTATGGTTTCGTTCTCCCAGCTA
ATCAAATTCAACCAAGTGGAGAAGAGACTAGTGACGCTCTACTAGCCGCT
GTCCTCGCCATGAAACCAGAATATCAAATGTTTTCCTCTTCGAGAGCAAC
CAGGATACGATTCCTCAATGATCCAgcagttttgtttattttagtaTTTC
TATCTAATCTTTTCATATATAGAAATTGTTCAtaaatgtaaatatttttt
gaattatctTACCTTAGGGTTCAGAAATACAGGCTTGAAATAACCTGATC
TACACATACCCATGTCCTTT
Run BLAST on NCBI

transcript from alignment at sc0000082:548991..557479-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008189 ID=TCONS_00008189|Name=TCONS_00008189|organism=Clytia hemisphaerica|type=transcript|length=8489bp|location=Sequence derived from alignment at sc0000082:548991..557479- (Clytia hemisphaerica)
CAACGATGTTCAACTAAAAGTTCTCAAGAAATGGATTTCAAGCAACCCTT
TGGTGAGTGTCCTTTTTTATTAGAAAAGAAGAGAAGAAAATGGGAATAAC
GAAGGAACTTGATTTTTACAAAATTGATTTGCAGGGGGCCAGAGTGTCCT
AGGTTATAAAATATCAAAAAAAAATGCTTATTAGTTTCCTGCAAGATCTT
TTCTCTTGCATACCTTAGGTTGATCTTTGGAAAGAGCCAAGTGCACCTGG
CCACGTTGTAGACATCCACATGCCAAAAGGAAAGATCTCATCTTTCGAGA
AATTGTTGACAGCCCATGGAATTTCTTATAATATCATGGTCCCTGATGTG
GAAGATCTTTTGAATGAAGAAGAACTCTCCAACATGAAGAACAGCTTCTA
TTCTTCTTTTGACTACAATAAATATAACCGTTGGTCTGATGTAAGTCGAA
GTGTTCTTATGTTCTTATTCATTTTATGAGAAATTAAAAGAACAAAAATT
ATTTCAAGTAAGCAGACTTTTTGTTTCAATAATCAATACATCGAAAAAAT
TTCGAATTTAATTCTTGTCATTTTCTTTTTTTAGATCAAAATGGAATTAC
AAAACTTGGCTCGTTCTAACCGAGGAATAGTCTCTTTGTTTCAAGTTGGA
CGAACTTATGAAGGAGAAACTATGATCGGCCTTAAGGTTAGTTTCCCTTC
GAACAGTTTTCGCTTCGCAACACCAATCGGTGACATTAGACCACTGTCTG
GGCAGTAAATAAAGCTTTTGGTAAAAGGACGTACAAAAGCCAAGCTTCTA
TCTTATATTAATCTGAGCTCAACACGGTGTTTTTGCCCTCATCGGACCAA
TTGAGCTCCTTTATATGAACTAACCTACCACCACACCTTATTTTTTTTGA
CAGGTGACAAACGGTGACGGGCGATCAAAACCAGTGGTTTGGATTGATGG
AGGTATCCATGCAAGAGAATGGATTTCACCCGCCACTGTCATGTACTTCA
TGAACAAGGTTAGAGGTTTTAATTTTGAAAAATGAGAACTTTTTCTGGAC
TATTGCAGCCTTGTTGCCATGACTCTTATTTGATAAACTACGATTGTATC
TCTATCTAACTTCAGCTTCAAAATTTAGGGCTGCGTGTTTCTTATGTAAG
AAAGTTTTATACTAAACTTCAACATTTAAGCATTCATTGAAAAATATATT
TCTTGTAGATGATTACTCAACAACGATCAGACAATCGTGTCGCACAAGCC
TTAGCCAAATACGATTTCTACTTCATGCCCGTTTTCAACATTGACGGATA
CAAATACACTCACACCGGCCGACGTGCCCGTTTCTGGCGTAAAACACGTA
AACCTTACGGATGGTACTGCTACGGAGCTGACCCTAACCGTAACTGGGAC
AGTCACTGGGAAACTGGTATGGGTTATCAAAAATTATTTTCCAGTGCTTG
GGGTGACCATCAAAAACTTGTATCTCTCCTTTATCTGAATGGACTTACCA
CATTGACACCTTTCTAAGAAACTCCGGGAGCTATTTCCAAAACCTTTCAT
TAGCTTAAACGATTTCTACACTTCTTTGTAAATTAAAAGTAAAGAAAATA
GGAAATCATTGAAATCATTAACCGGAAATATTTCCCCAGGTGTCGGAACA
AGCTCCAACTGTCAATCCGATGTTTACAGAGGCCCACAACCAGCCTCCGA
AGTTGAAGTTCAAAACGTTCAAAGATACCTTGGAGCACTGAACTTGAAAT
CATACTGGAACGTTCACGCTTACAGCCAACTTGTCTTAACACCATGGTCG
TGGACCACCACTCTCCCAAGAGATTACTCGGAAATTGTAAGTTGTCATGT
CCTTACGCCCCTCAAATAAAACAATTTTAATCCAAGTTCAATCTCCTTAA
AAATGGAAGTGACCATCTTTCTATCACTAAAATTCTCCCAGGTAGAGTCG
ACAAGTTTGTCCTTTTTTAATATTCTTTGGAAATGTTAGGCTACGTCATA
TTGTTTTTAAACTGTTAAATCAGGTCCAAATCGTTGAACTGTCCATAGTT
TATGCTACAGAAATACGATTCCAAACAATCACTATAATCTTTGGTTTTCA
TTTTTCCAGAAACGTGTTGGAGATGTTTTCGCCAATGCTGTCAGTCGACG
ATACGGAACTCAATACAAGGTCGGACCTCCATCAAGAATCTTATGTAAGC
TTCCGTAATTTTATATAATCTTATGTTCGAGCATTAACATGCTAGTATCG
TGATCAATGATCTCCATTACGAGACCTTTCTGATCATAGTTTGAGCTACT
TTTAGTAAACTTGTCGTCAAGAATTGAACTCACTCATTCATCTTAAGTAG
ATCTGGATAAATTTCTTCTTGCGATTTCATCATTTCTTGATCTTTAAGTA
TGACGTGCGTTAAATGCCGTGATTGAGAGACGTGCTGCTTATTTCGACCC
TTAGATGGAAATATTTTGATTTCTGTTTTTTTTTGCAGACGCTGTATCCG
GAGGAAGTATCGATTATACTTATGAAAAATTGGGTGTCGTCTACTCGTAT
GCTTTGGAGCTTCGTGATACTGGTCGCTATGGTTTCGTCCTCCNNNNNNN
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CTTGCCTAAGTACCCACGGGCTGCCTTTTTTCGACGAATCTCGTGTCATG
TCTATAATTTCACTCCTCTTATCTTGACATCAAAGTTTTCCTAATTCATC
AACAAGTACGGCAAATGTAAAGCGAGCGAAGCGAGAAAAAAATCTAATTG
CAAAGCCTTTTCGGACGTCGCAGGTTGCCGGTATGGTATAGTTTGAATAA
CGCCCTTTCTGATCATTTTTGCAACAATTTAAAAATCTTTTTCAAAATAT
GGTTAAAAGATACGTGACCTGGGAGTGACAGAGTCAAACTTTGAAGAGAT
TTTTCCCTTTAATTTTGACTTCATCGTATTTTAAGCCAGCTTCCCAACAT
CCAAAGGACTTTAAAATGCGTTCAGCAACAGCTAAACCGGCGTGCGACGC
CGGGTACCGGCTAGTTTGCTTTAAAGGGCTAAGAGCTGTTTAAAATATTA
CCGTGATTGGCTTTGTGAAACAAAAAGAAGGATTGCCGATTTTTTTTTTT
TCACTTTACCAGATCAAAGAAGAGCTGCTACATTTGTCACGGAAACATTC
CTCAAAAGCTTTTTTGTTCAACGTCGGCAAAACTTACGAAGGAGAAGATC
AGATTGGCATCAAGGTTAGTGTGGAGTTCTTTATTGAAGTGTAGATTCAA
GAGATAGTACCTTCACTATTTAACTTAACCACCATACGTTATCTATTTGA
CAGGTGACAAACGGTGACGGGCGATCAAAACCAGTTGTTTGGATTGATGG
AGGTATCCATGCAAGAGAATGGATTTCACCCGCCACGGTCATGTACTTCA
TGAACAAGGTGTGTTTTGGGTATTAGGTGTTGTTTTTCTTCTTCTTTCCA
TGTTGCCAATGATCGACGAGGAAAGGTTTTTTCTTATTTTCTTTCGTTTT
CAGTTGCTTACAAACAAAGCGGATGATCGTGTGTCAAGAGTCTTAGCCAA
ATACGATTTCTACTTGATGCCCGTTTTCAACATTGATGGGTACAAATACA
CTTTCACGAATCGATCAACTCGATTGTGGCGCAAGACAAGGACAAAATAC
AAAGAAAGTAAACCACCTTATAAAACGTGTTACGGAGCAGACCCCAACAG
AAATTGGGATAGTCATTGGGAAACAGGTACTCTATAATACCTTTCCAACT
TTTTATTTCCGTGCCTTGTAAAGGAAATTACTAGTGACTAGTTTGGGGAG
ATTAAAGTAAAATGTGTACCCTCTGTTAGGGTTAGGGTTAGTGTACCCCT
GTTTCAGTGACACTGAATTTATTTTAAGTTAGTGAGGGTAGAGTAGTGTC
GTAGTTAAATAACAATTGACTAAACATCGCCATACGTGGGATGAATGGGA
TGTAAATTTTAGGGGATCTCAGAACACCAGGTCCAGATCTCCTTTAGCCA
GTAAGGAAGAATGGAAAGCGAAATAAGTAAGTGACGTGGTGCTAATCTGA
TAGTTAATAACTGTACTTTATTACAGCTCTTCTTTCCAAAAGCATCAATG
TAAACTTTCAAACCTTATTTTCTAAGTATGATACCGCTCTTCAAATCATA
GTATTGGAAACTGTGTTGAATTCAAAGTCAGTTGTACAATAAATTTTCAA
ACCCACGTTCCCTTGTTCAGGTATCAACGCCAGTGACAATTGTACAACAG
ATTACTACAGAGGGCCTTTTGCAGGATCTGAAAAATGTGTTGCAAACGTC
CAAACGTTTCTTCGTCAACTGAAGAACTTAACTTCGTATTGGAATATCCA
TGCTTTCAGTCAGCTTGTCCTCACAACGTGGTCTTGGACGAGCGCCCTAT
CGAAAGATTATCCAGAAATTGTAAGCCTTTCAATTTTGCAACACGTTAAA
TTATAATCCATAACCAGCCGATAATTTTAAAAACAACAAAACAAAAGAAA
GTCCGAAAAGATTCATTCTGACATCAAAAATCTTGAAGTAGCAGACGAAG
TAATCTCAAGTAAAATATGCAAATTTTTGCAAAGATTTTTGCCTGAATGA
TGTATTAGATAGAATACGAAATATAGCATATTTTACTTGAGATCACTTCG
TCTGTTACTTCAAGATTTTTGATGTCAGAATGAATCCTTTCGGACTTTCT
TTTGTTTTGTTGTTGTTAAATTATAAATTCATACAATATTGACAAAGACG
TGTTGTTACACGCATCTTGTGTATTAATATTTTATTCTTCCTGGCATTCT
TTCTACTTGTCACATTTAAGTAAGTTGCTCTCATTCTTCATTCATGTTTA
TTGGACTTCCAAGAGACGGTAACATTGGTTGCAGATCAATATATCAATCG
CCCATAACCATCCTTAGCATTCTTCTTTTTATGTATAGAAGCGTGTTGGA
GATGTTTTCGCCGAAGCCGTCAGTAAAAGATATGGCACACATTATAAAGT
TGGTCCACCTTCAAGATTTCTGTGTAAGTATCCTTCAATGTTTCAAAAGC
CTGGTTTAGACATTTCATACATTCTATACGAGCCTGATCAGGCCAACTTA
AGTTTTAAGTGTAAATGATGCAAATCAATTTGACTTGAGGAGTTGGTGAG
TCAAAACTTGAGAAAGAAGTTAATAATCAACCATCACCTCTTCATCTCTT
TCGTTCAGACCCAGCTTCAGGTTGCAGTATTGATTTCGCACATGATGAGC
TGAAAGTCGTCTACTCTTACGGTCTAGAACTGAGAGATAAAGGCCATTAT
GGTTTCGTTCTCCCAGCTAATCAAATTCAACCAAGTGGAGAAGAGACTAG
TGACGCTCTACTAGCCGCTGTCCTCGCCATGAAACCAGAATATCAAATGT
TTTCCTCTTCGAGAGCAACCAGGATACGATTCCTCAATGATCCAGCAGTT
TTGTTTATTTTAGTATTTCTATCTAATCTTTTCATATATAGAAATTGTTC
ATAAATGTAAATATTTTTTGAATTATCTTACCTTAGGGTTCAGAAATACA
GGCTTGAAATAACCTGATCTACACATACCCATGTCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004604XLOC_004604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008189-exon-sc0000082-1575043694:557428..557479TCONS_00008189-exon-sc0000082-1575043694:557428..557479Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1575043694:557040..557261TCONS_00008189-exon-sc0000082-1575043694:557040..557261Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1575043694:556794..556895TCONS_00008189-exon-sc0000082-1575043694:556794..556895Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1575043694:556472..556576TCONS_00008189-exon-sc0000082-1575043694:556472..556576Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1575043694:550854..551076TCONS_00008189-exon-sc0000082-1575043694:550854..551076Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1575043694:550160..550359TCONS_00008189-exon-sc0000082-1575043694:550160..550359Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1575043694:549557..549641TCONS_00008189-exon-sc0000082-1575043694:549557..549641Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1575043694:548991..549371TCONS_00008189-exon-sc0000082-1575043694:548991..549371Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1510915933:557428..557479TCONS_00008189-exon-sc0000082-1510915933:557428..557479Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1510915933:557040..557261TCONS_00008189-exon-sc0000082-1510915933:557040..557261Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1510915933:556794..556895TCONS_00008189-exon-sc0000082-1510915933:556794..556895Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1510915933:556472..556576TCONS_00008189-exon-sc0000082-1510915933:556472..556576Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1510915933:550854..551076TCONS_00008189-exon-sc0000082-1510915933:550854..551076Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1510915933:550160..550359TCONS_00008189-exon-sc0000082-1510915933:550160..550359Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1510915933:549557..549641TCONS_00008189-exon-sc0000082-1510915933:549557..549641Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1510915933:548991..549371TCONS_00008189-exon-sc0000082-1510915933:548991..549371Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1491911889:557428..557479TCONS_00008189-exon-sc0000082-1491911889:557428..557479Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1491911889:557040..557261TCONS_00008189-exon-sc0000082-1491911889:557040..557261Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1491911889:556794..556895TCONS_00008189-exon-sc0000082-1491911889:556794..556895Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1491911889:556472..556576TCONS_00008189-exon-sc0000082-1491911889:556472..556576Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1491911889:550854..551076TCONS_00008189-exon-sc0000082-1491911889:550854..551076Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1491911889:550160..550359TCONS_00008189-exon-sc0000082-1491911889:550160..550359Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1491911889:549557..549641TCONS_00008189-exon-sc0000082-1491911889:549557..549641Clytia hemisphaericaexon
TCONS_00008189-exon-sc0000082-1491911889:548991..549371TCONS_00008189-exon-sc0000082-1491911889:548991..549371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:548991..557479 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16283	0.356836	0.345713	0.375462	1.27622	1.23283	0.661047	0.535842	0.24344	0.930537	0.728616	1.27494	3.69392	1.98634	0.0855003	0.39176	0.0977291	0.270575	1.90899	2.08023	0.460828	0.499826	0.181144	0.386226	3.86927	5.84017	0.546785	0.236469	37.6219	52.7922
Blast
[Close]
BLAST of TCONS_00008189 vs. Swiss-Prot (Human)
Match: CBPA2 (Carboxypeptidase A2 OS=Homo sapiens GN=CPA2 PE=1 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 7.168e-81
Identity = 140/381 (36.75%), Postives = 218/381 (57.22%), Query Frame = 2 
Query:    2 NDVQLKVLKKWISSNPL-VDLWKEPSAPGHVVDIHMPKGKISSFEKLLTAHGISYNIMVPDVEDLL---NEEELSNMKNSFYSSFDYNKYNRWSDIKMELQNLARSNRGIVSLFQVGRTYEGETMIGLKVTNGDGRSKPVVWIDGGIHAREWISPATVMYFMNKLLTNKADD-RVSRVLAKYDFYLMPVFNIDGYKYTFTNRSTRLWRKTRTKYKESKPPYKTCYGADPNRNWDSHWETGINASDNCTTDYYRGPFAGSEKCVANVQTFLRQLKNLTSYWNIHAFSQLVLTTWSWTSALSKDYPEIKRVGDVFAEAVSKRYGTHYKVGPPSRFLYPASGCSIDFAHDELKVVYSYGLELRDKGHYGFVLPANQIQPSGEET 1129
            N+ Q+K L +  +   L +D WK P+ PG    + +P   + + +  L + GI+Y+IM+ DV+ LL   NEE L N +     +F++  Y+   +I  E+ NL   + G+VS   +G ++E   M  LK + G    KP +W+D GIHAREW++ AT ++  NK++++   D  ++ +L   D +L+PV N DGY   F+    R+WRKTR+K   S      C G DPNRNWD+ +  G  AS N  +D Y GP A SE  V ++  F++    + ++  +H++SQL++  + +      D+ E+  V    A+++   +GT YKVGP    +Y ASG SID+++D   + YS+  ELRD G YGF+LPA QI P+ EET
Sbjct:   34 NEEQIKNLLQLEAQEHLQLDFWKSPTTPGETAHVRVPFVNVQAVKVFLESQGIAYSIMIEDVQVLLDKENEEMLFNRRRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG--DKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGY--VFSQTKNRMWRKTRSKVSGS-----LCVGVDPNRNWDAGF-GGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFITLHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLRSLHGTKYKVGPICSVIYQASGGSIDWSYD-YGIKYSFAFELRDTGRYGFLLPARQILPTAEET 403
The following BLAST results are available for this feature:
BLAST of TCONS_00008189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBPA27.168e-8136.75Carboxypeptidase A2 OS=Homo sapiens GN=CPA2 PE=1 S... [more]
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