TCONS_00008241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008241
Unique NameTCONS_00008241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008241 ID=TCONS_00008241|Name=TCONS_00008241|organism=Clytia hemisphaerica|type=transcript|length=747bp
CAAACATATTGCGGTGACAAATTTGTTCCATATAATTGTTTCAATAAACT
CAAAGGGTTCCTCGGGCAAGTGAACACCACATCAGCGAGTTGACATTTGA
CAAGTGGAAAAAAGTCTTTCTTTTGGTAGATTTTCTGCTCACGAGCGGGA
AGATATTTGAAAGTGCCAGCATCGTGATCTTGGAAAGGGTAGAGATCGAT
ATGGCGATCACGATGGATGAGTCTGGCCATGGGATCGGTGAACGAACATT
CATCCATATATCGCGTCACGTTTTTCCCTTTGCAATTATAACGCTTCCTT
TTAAAGTAGGGAAGATTCCAGTCCGGTGTGAAATACAAATAAAATCCTTC
ATCGTGTCTTGTGGATTTCAAAGCACGTGATTGGACGAGGATGGGGAGCT
TTCTTAACGTCACCAGGTCATCCACGTGGACAGCCAGGTCTACATCACCA
TCATATGGCACAAACTCCTCGTCCCTCCACGCTCCTAACAAAGTTCCTGC
ATCTAGAAAATATCGCACTTTATGCTCTTCCGCTATTTCTTTCCATTTTC
TCAACAAACGAAGAAAGATTTTCCTGGCCACCAAATTCTTGCATGTACCA
TCTCCATAGTTTCGATGAGTTGTGGAAGAATTTCGATCCAACCACTCCAA
GCTACTGTTTTGTTCGTTTCTGTTCGTTATTTTGTTGTCGTGTGTTTTCG
TTGGAATGatgcttcttttgaaaatataattgtGGCCTTCCCATGCA
Run BLAST on NCBI

protein sequence of TCONS_00008241-protein

>TCONS_00008241-protein ID=TCONS_00008241-protein|Name=TCONS_00008241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
AWEGHNYIFKRSIIPTKTHDNKITNRNEQNSSLEWLDRNSSTTHRNYGDG
TCKNLVARKIFLRLLRKWKEIAEEHKVRYFLDAGTLLGAWRDEEFVPYDG
DVDLAVHVDDLVTLRKLPILVQSRALKSTRHDEGFYLYFTPDWNLPYFKR
KRYNCKGKNVTRYMDECSFTDPMARLIHRDRHIDLYPFQDHDAGTFKYLP
AREQKIYQKKDFFPLVKCQLADVVFTCPRNPLSLLKQLYGTNLSPQYV
Run BLAST on NCBI

transcript from alignment at sc0000082:645904..646650

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008241 ID=TCONS_00008241|Name=TCONS_00008241|organism=Clytia hemisphaerica|type=transcript|length=747bp|location=Sequence derived from alignment at sc0000082:645904..646650 (Clytia hemisphaerica)
TGCATGGGAAGGCCacaattatattttcaaaagaagcatCATTCCAACGA
AAACACACGACAACAAAATAACGAACAGAAACGAACAAAACAGTAGCTTG
GAGTGGTTGGATCGAAATTCTTCCACAACTCATCGAAACTATGGAGATGG
TACATGCAAGAATTTGGTGGCCAGGAAAATCTTTCTTCGTTTGTTGAGAA
AATGGAAAGAAATAGCGGAAGAGCATAAAGTGCGATATTTTCTAGATGCA
GGAACTTTGTTAGGAGCGTGGAGGGACGAGGAGTTTGTGCCATATGATGG
TGATGTAGACCTGGCTGTCCACGTGGATGACCTGGTGACGTTAAGAAAGC
TCCCCATCCTCGTCCAATCACGTGCTTTGAAATCCACAAGACACGATGAA
GGATTTTATTTGTATTTCACACCGGACTGGAATCTTCCCTACTTTAAAAG
GAAGCGTTATAATTGCAAAGGGAAAAACGTGACGCGATATATGGATGAAT
GTTCGTTCACCGATCCCATGGCCAGACTCATCCATCGTGATCGCCATATC
GATCTCTACCCTTTCCAAGATCACGATGCTGGCACTTTCAAATATCTTCC
CGCTCGTGAGCAGAAAATCTACCAAAAGAAAGACTTTTTTCCACTTGTCA
AATGTCAACTCGCTGATGTGGTGTTCACTTGCCCGAGGAACCCTTTGAGT
TTATTGAAACAATTATATGGAACAAATTTGTCACCGCAATATGTTTG

Coding sequence (CDS) from alignment at sc0000082:645904..646650

>TCONS_00008241 ID=TCONS_00008241|Name=TCONS_00008241|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000082:645904..646650 (Clytia hemisphaerica)
GCATGGGAAGGCCacaattatattttcaaaagaagcatCATTCCAACGAA
AACACACGACAACAAAATAACGAACAGAAACGAACAAAACAGTAGCTTGG
AGTGGTTGGATCGAAATTCTTCCACAACTCATCGAAACTATGGAGATGGT
ACATGCAAGAATTTGGTGGCCAGGAAAATCTTTCTTCGTTTGTTGAGAAA
ATGGAAAGAAATAGCGGAAGAGCATAAAGTGCGATATTTTCTAGATGCAG
GAACTTTGTTAGGAGCGTGGAGGGACGAGGAGTTTGTGCCATATGATGGT
GATGTAGACCTGGCTGTCCACGTGGATGACCTGGTGACGTTAAGAAAGCT
CCCCATCCTCGTCCAATCACGTGCTTTGAAATCCACAAGACACGATGAAG
GATTTTATTTGTATTTCACACCGGACTGGAATCTTCCCTACTTTAAAAGG
AAGCGTTATAATTGCAAAGGGAAAAACGTGACGCGATATATGGATGAATG
TTCGTTCACCGATCCCATGGCCAGACTCATCCATCGTGATCGCCATATCG
ATCTCTACCCTTTCCAAGATCACGATGCTGGCACTTTCAAATATCTTCCC
GCTCGTGAGCAGAAAATCTACCAAAAGAAAGACTTTTTTCCACTTGTCAA
ATGTCAACTCGCTGATGTGGTGTTCACTTGCCCGAGGAACCCTTTGAGTT
TATTGAAACAATTATATGGAACAAATTTGTCACCGCAATATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004635XLOC_004635Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008241-proteinTCONS_00008241-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008241-exon-sc0000082-1491911889:645904..646650TCONS_00008241-exon-sc0000082-1491911889:645904..646650Clytia hemisphaericaexon
TCONS_00008241-exon-sc0000082-1510915933:645904..646650TCONS_00008241-exon-sc0000082-1510915933:645904..646650Clytia hemisphaericaexon
TCONS_00008241-exon-sc0000082-1575043694:645904..646650TCONS_00008241-exon-sc0000082-1575043694:645904..646650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:645904..646650 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.791325	0.900278	1.2693	1.31486	31.9255	23.8927	27.7234	25.9543	14.2258	19.8924	18.5731	12.6924	15.3061	19.4026	13.1432	13.0599	14.8511	16.1352	14.6508	10.9298	7.33219	7.74365	5.82196	7.83639	11.1157	9.09909	28.4829	29.0467	2.12258	3.05743
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007074LicD_fam
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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