TCONS_00008252 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008252
Unique Name	TCONS_00008252
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1541

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000084:82207..87152+

transcript sequence

>TCONS_00008252 ID=TCONS_00008252|Name=TCONS_00008252|organism=Clytia hemisphaerica|type=transcript|length=1541bp
ATNAAACACCGCTCACTGCGTTGTACACTGCTCAATTGATCATCGAGGCT
GGATTTCCACCAGGTGTTTTCAACATTGTTCCAGGCTATGGTCCAACAGC
TGGAGCTGCCATTTCTGAACACATGGACATTGATAAAATAGCTTTCACTG
GATCCACTGAGGTTGGAAAGATTGTTCAGAAGGCAGCTGCTGATTCCAAT
CTAAAGAATGTTACACTTGAACTTGGGGGTAAAAGCCCGCACGTCGTATT
TGCCGATGCTGATCTCGAGCAAGCAGTCGAATTGTGTCATTTCGGTTTAT
TTTTCAATATGGGTCAGTGCTGTATTGCCGGTACACGAATTTTCGTACAA
GACACAATTTATGATGAGTTTGTCAAGCGATCTGTTGACCGTGCGCTCAA
GAGAACGGTTGGAAGCCCATGGGATGAAGGAAATGAGCAAGGGCCACAGA
TCGATTCGGAACAATTCAACAAGATTTTAGGACTGATTGATACTGGAAAG
AAAGAAGGAGCCAAGATGCATTGCGGTGGTAATCGTCATGGTGACAAAGG
ATACTTCATTCAACCAACCGTCTTCTCTGACGTCACAGATGATATGACCA
TTGCTAAAGAAGAGattttcggTCCAGTTATGCAGATTATGAAATTCAGT
ACAATGGAAGAGCTTCTTGAACGTGTCAACAAAACAATGTACGGCCTTGG
TGGTGCTGTACAAACCTCTAGCCTGGATAATGCACTCACTGTTTCTCATG
GAATACGGGCTGGTACCATCTGGGTGAATTCATACGATAACTTCGACTGT
ATTGCTCCTTTTGGAGGTTACAAAATGTCTGGGGCAGGGCGTGAACTCGG
TGAATATGGATTATCGCAATATTCAGAAGTTAAAACGGTGATGATCAAAG
TGCCAAAGAAGAACTCATAACTTGGTTTGTATTTATGTAAAGAGACACCT
GATCACTTAAGAATATTACTAACATCTCTTTAAGCAGGGCTCAACTAAGA
ATTAACATTATGGAGGTAATATTTCTGTTAAATAGTTCTCAAACTTATCA
ACTGTAAATCGTTAAAGGTAAATGACATCTTTATTACGTGTAAGCTCGTT
GCACACGAGCGATAAATTTGGTTGCACCCTCCACACACTAACACATCttc
ttgtattttattttttataattttttttttaattttagtccCATCGTAGA
ATGTATAATTTATTGATCCGCGAATTTAGaagaatataaaataaaaagtc
ggaAATTCTTAAAACAGAATTTTAAAATGTACATCATTTTTTTCCAGGAC
AGGAATGGGTTTTATTCCTGTAATTTCTTTTAGATGAAAGTCTTCGGAAA
TAAATCTTGTTTTTATGTGActaaaaacttacaaaaaacGTTTTCGGTGA
AGAGTCAGAATTAAAAGTGCTTTGTATGTCGTGAAAGTAATATTCAAACC
GTCattctgatattttttttcaactaaATTTATGGACGAGTTTGAGTTCg
agaatatttttaacattgatttattcaattttactttCCAA

Run BLAST on NCBI

transcript from alignment at sc0000084:82207..87152+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008252 ID=TCONS_00008252|Name=TCONS_00008252|organism=Clytia hemisphaerica|type=transcript|length=4946bp|location=Sequence derived from alignment at sc0000084:82207..87152+ (Clytia hemisphaerica)
ATNAAACACCGCTCACTGCGTTGTACACTGCTCAATTGATCATCGAGGTG
AGATATCTATACCATGATGTTCGTTTGTTATTTTGGTGAAACCATGGAAA
ACTGAAACCCTTGAAGTAATTTTGTCGGTTTCCTTTTCTACTGCGACAAT
TAGTGTTATTTCACCTcactttcaatattttcaagcaATGTCCTAAATTG
CTGCATTTGCCGAATTCGACTTGTAAAAATCGAACCAAGTTTTGCCTGTT
ATTTCAGTCATTTCCCTCTTAAACAAGTCACCAATTCAATCCTTCTttcg
aacgaaaaaataaattccAGTAAGAAAATCGTTGTCAACGCTCCTAAGGA
GTGCTCCCTTATAGAACACCCCTTTGTATTTCCGCTCGTTTATCACTAGG
CTGGATTTCCACCAGGTGTTTTCAACATTGTTCCAGGCTATGGTCCAACA
GCTGGAGCTGCCATTTCTGAACACATGGACATTGATAAAATAGCTTTCAC
TGGATCCACTGAGGTATAAAGTTGTTCCATAAACCCTTACTAAGGAGAAT
GGGTCAGAGTTTTTCCAGTAGGATGGATATTAAATGTcagaagtcgttgc
attgacttTTGACGTCATTTCTCCCTTGAAAACTTAACCCAATCCCTTCA
TAACGTTAGGCTTGATAAGTGTTTTTTGGAAGCGTTATGAAATTTGATGG
ATCCACTGTAGATTTGTTAACGTATGTAAAATCAAGGTCAAAGACGTGAG
ACTGGACTTCTGTGATATTTGGTGTCAAAAAGAGTACAGAATTGACgttt
tcattgtattttattttttggagtTACATCGAGAAATCGATAAAGTCCAC
TAAAAAGTCAATTTTATCGTTTTCAATGATGATTATAATGCCGATTTTTA
GCTGgcatttttgataatattaGGTTGGAAAGATTGTTCAGAAGGCAGCT
GCTGATTCCAATCTAAAGAATGTTACACTTGAACTTGGGGGTAAAAGGTA
TCATGTATAAAGAAtaatttcatttaaatttttcatctaTTTTTCCAATC
ATGCTTCGTTTCATTTGCAACTCTCGTCACTTCGAATCTTGAATGTCAAA
TTATAGAGTGTATTTTACTAGGGTTTCATATTGGCAGGAACAGGCTCAGA
AattggttcgaattatagaaaaattcgaTTAATAGAAGAGTCCATTGTAC
CTCCTTTATAAGCTGAAGTTTTAAACGGTCAACTTTCTGCCTTTCTTTCC
CTCATTTTTGACGGAAGTTGAGCATTCTAAGTCAATGCTATCTTTTCTTT
CGATACTTTTTTCATATAAGGCTTCTTGTTGTCGACTTTTCGTTCACATT
CTTCCTTCCTTCACGTCTAACAGTGGATTGTAAGGAAGGTCTAATAGTGG
AAGATTTTTGCTTAGTTTCCATCTTATTTTTCTTACTCATCATGCGACCG
TAGTGCAATGGTaaagcatccggctacggtgcgcaaggttgtgggtccAA
Ccctcagccgggtcataccaaagatttccaaaatggtacttgatgcctct
ctgcttggtgCTCAGCAATtgagagaaggatcaagggtaagtggaacaat
ccagagagagagagagtggtgccctcccctaccttcgggtagatctatcg
aaagaggagccttcgggtcgcctccgactgcggtcgcagacttattTACT
TTCTTACTCGTGTAATTTTTTAGCCCGCACGTCGTATTTGCCGATGCTGA
TCTCGAGCAAGCAGTCGAATTGTGTCATTTCGGTTTATTTTTCAATATGG
GTCAGTGCTGTATTGCCGGTACACGAATTTTCGTACAAGACACAATTTAT
GATGAGTTTGTCAAGCGATCTGTTGACCGTGCGCTCAAGAGAACGGTTGG
AAGCCCATGGGATGAAGGAAATGAGCAAGGGCCACAGGTAAGGCTTGATG
GGAAATTACTATCTGGACTACGAATTGTGAAGTCAAACCCGGCGTAAGAT
ATTCGAGATGCTTCCCCTTCCCTTGTTACAAGACAAAAATCTTTCCTTGA
GTCACTCCGTAGACATTTCACATATAAAATGACAATATGAGATGGCCAAA
AACCGAAACTTTTTCAAGTTAAACTACAGAACTTGTGCCATAATCGAAGC
AATTATTTGATTTGTGTAAGTAGTCGCCTCTATAAATTCGAACGTATGCT
TCCACAATGGCGGATTTTCCTTAAGTTAAGTAACTTTTgcaaaagctgaa
aaaaaacttctatagATAGTTTCTGAAAAAGATCTCCACTTGAAATCTAT
TCCACTTTCTTAACTTCCAGATCGATTCGGAACAATTCAACAAGATTTTA
GGACTGATTGATACTGGAAAGAAAGAAGGAGCCAAGATGCATTGCGGTGG
TAATCGTCATGGTGACAAAGGATACTTCATTCAACCAACCGTCTTCTCTG
ACGTCACAGATGATATGACCATTGCTAAAGAAGAGGTAAGGAGAATGGGG
CGAGTTAGGAAAGAGTTGAGAATGAGtggtattagattttattttccttC
ATGGCGCATTGAATAACTGTTAAGGATTTAAAATGAACCAGATGGTactt
attttaaaaatcttttcccACTCCATTTCTCACTTTTTGTTACATATTAT
TTCCAGTAGACACACAAAATATAAATAGACCTTGCCcaattattcaaaaa
tatgCAGGCTAGTTGTTGTCAATTCTTTAATTATTTTTACTATTCAAATA
CATTCAACTTTCAAATGAAATTCACGTGGTTGCGTCCTAGAAAAGTTGCC
ATGGATCCTAAGgtttggccccctactattattctattttaaagattttc
ggTCCAGTTATGCAGATTATGAAATTCAGTACAATGGAAGAGCTTCTTGA
ACGTGTCAACAAAACAATGTACGGCCTTGGTGGTGCTGTACAAACCTCTA
GCCTGGATAATGCACTCACTGTTTCTCATGGAATACGGGCTGGTACCATC
TGGTAAGAAATGCGAATAATCGACTTGTTTAGTCTTTCGTTTCTTTTTAT
GCCCTTAATCTGCACGACACTACCCAGTTTGGAATTTTCACCAaaacaca
ggttgcaaaattagtctgaagacaaatcacgcttttactcgaaaatttta
tgtgcttgttaccagacatttatttctgattaaTCTGATCTTTTTGTTTC
CAGGGTGAATTCATACGATAACTTCGACTGTATTGCTCCTTTTGGAGGTT
ACAAAATGTCTGGGGCAGGGCGTGAACTGTAAGTTTAAATGATCTTTATC
CTCTGATTGGGCATTCATACCAAGAAATTCTTCAACAAAGCAAGAAACTA
ATTTCCTTCATTTAGTTAAAGATTCGAATCACGGAGGGTGTTTATACGGC
TTTCAAACTGAAATTTAATTAACGGGTAATTATCAATTTTATCTTTCCCC
CTTTAGCGGTGAATATGGATTATCGCAATATTCAGAAGTTAAAACGGTAA
GTTCATCTTTGTGTTCATAGgtcaaaaaaggtttgtttcGTTCCTGAAAG
TCCTTAAAAAAGTCTCACAGAAACACGGATTTCATACTACCCGCCGCAAA
AACGGTAATTTAAAGGCTCCCAAATCTTAAGGTTTCACTTTTGCTTCCCT
GGGAAGGTTTGAAGTttccattgacttccaagcccgaggggctagactcg
agactcctggatgggaaatgaatccactacaaacgctggattgaaagtaa
aatctatcgctacaatccttcaagaaatatttgagacaaatgggaaattc
cccaggaagttttgaaaccacaatcgatttgtaagtgctctaaagtaggt
tcgaagggtagagttttaactctgagttttaacgctagacttaagactaa
tGACCTTATGAGcttaggatccaaaagttcaaaaatggtccagtaaggct
cagaatatagcctggaagtctgccaacccctcccaaattgaaatattcga
ttaagttaaagagatagcccaaaatcgactttttcgcctgaactttaaat
ctcgaaaaacatcaaaataaccggaattctcaatatatttcttgaaagat
tgtagatttcaaaaaatgcagtcctcaaaaacaaaggaaccgctagatac
aatctgtcgtcatgattgcggcgcgttctaggcTTCAAACTTAATGGAAG
ATTCCACTCTAGCCACTTCTTCTAGCCCAATAATCCCAATAGTCCCACCC
TATAGTTTTCATAAAAGACCCgttttatatcatttttaccAGGTGATGAT
CAAAGTGCCAAAGAAGAACTCATAACTTGGTTTGTATTTATGTAAAGAGA
CACCTGATCACTTAAGAATATTACTAACATCTCTTTAAGCAGGGCTCAAC
TAAGAATTAACATTATGGAGGTAATATTTCTGTTAAATAGTTCTCAAACT
TATCAACTGTAAATCGTTAAAGGTAAATGACATCTTTATTACGTGTAAGC
TCGTTGCACACGAGCGATAAATTTGGTTGCACCCTCCACACACTAACACA
TCttcttgtattttattttttataattttttttttaattttagtccCATC
GTAGAATGTATAATTTATTGATCCGCGAATTTAGaagaatataaaataaa
aagtcggaAATTCTTAAAACAGAATTTTAAAATGTACATCATTTTTTTCC
AGGACAGGAATGGGTTTTATTCCTGTAATTTCTTTTAGATGAAAGTCTTC
GGAAATAAATCTTGTTTTTATGTGActaaaaacttacaaaaaacGTTTTC
GGTGAAGAGTCAGAATTAAAAGTGCTTTGTATGTCGTGAAAGTAATATTC
AAACCGTCattctgatattttttttcaactaaATTTATGGACGAGTTTGA
GTTCgagaatatttttaacattgatttattcaattttactttCCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004644	XLOC_004644	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000084	supercontig	sc0000084:82207..87152 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0981181	0	0	0	0	0.271971	0	0.403719	0	0	0	0	0.477089	0.333346	0

Blast

[Close]

BLAST of TCONS_00008252 vs. Swiss-Prot (Human)
Match: ALDH2 (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 437.187 bits (1123), Expect = 1.411e-147
Identity = 205/304 (67.43%), Postives = 243/304 (79.93%), Query Frame = 3

Query:    6 TPLTALYTAQLIIEAGFPPGVFNIVPGYGPTAGAAISEHMDIDKIAFTGSTEVGKIVQKAAADSNLKNVTLELGGKSPHVVFADADLEQAVELCHFGLFFNMGQCCIAGTRIFVQDTIYDEFVKRSVDRALKRTVGSPWDEGNEQGPQIDSEQFNKILGLIDTGKKEGAKMHCGGNRHGDKGYFIQPTVFSDVTDDMTIAKEEIFGPVMQIMKFSTMEELLERVNKTMYGLGGAVQTSSLDNALTVSHGIRAGTIWVNSYDNFDCIAPFGGYKMSGAGRELGEYGLSQYSEVKTVMIKVPKKNS 917
            TPLTALY A LI EAGFPPGV NIVPG+GPTAGAAI+ H D+DK+AFTGSTE+G+++Q AA  SNLK VTLELGGKSP+++ +DAD++ AVE  HF LFFN GQCC AG+R FVQ+ IYDEFV+RSV RA  R VG+P+D   EQGPQ+D  QF KILG I+TGK+EGAK+ CGG    D+GYFIQPTVF DV D MTIAKEEIFGPVMQI+KF T+EE++ R N + YGL  AV T  LD A  +S  ++AGT+WVN YD F   +PFGGYKMSG+GRELGEYGL  Y+EVKTV +KVP+KNS
Sbjct:  214 TPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS 517

The following BLAST results are available for this feature:

BLAST of TCONS_00008252 vs. Swiss-Prot (Human)

BLAST of TCONS_00008252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ALDH2	1.411e-147	67.43	Aldehyde dehydrogenase, mitochondrial OS=Homo sapi...	[more]

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TCONS_00008252 (transcript) - C. hemisphaerica