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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008255 ID=TCONS_00008255|Name=TCONS_00008255|organism=Clytia hemisphaerica|type=transcript|length=3349bpRun BLAST on NCBI protein sequence of TCONS_00008255-protein >TCONS_00008255-protein ID=TCONS_00008255-protein|Name=TCONS_00008255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1025bp SRHLRQRNRLPTASGRSMAWHSRSKSFLSISGPTSVAVDQYATFNVDFTKRun BLAST on NCBI transcript from alignment at sc0000084:102536..126625+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008255 ID=TCONS_00008255|Name=TCONS_00008255|organism=Clytia hemisphaerica|type=transcript|length=24090bp|location=Sequence derived from alignment at sc0000084:102536..126625+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000084:102536..126625+ >TCONS_00008255 ID=TCONS_00008255|Name=TCONS_00008255|organism=Clytia hemisphaerica|type=CDS|length=3078bp|location=Sequence derived from alignment at sc0000084:102536..126625+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008255 vs. Swiss-Prot (Human)
Match: PZP (Pregnancy zone protein OS=Homo sapiens GN=PZP PE=1 SV=4) HSP 1 Score: 524.628 bits (1350), Expect = 9.669e-163 Identity = 336/1009 (33.30%), Postives = 539/1009 (53.42%), Query Frame = 2
Query: 170 NFLVICRGVVQESSILS------NIEKYTKLRIFIRNGMSPKCRLLVY-YFHERELVADSHTFDVSMDTRNKVSMSFKDSEKKPGSQVELLLKASPGSKFAVSAVDESIRLMAQTNDIKEEQLNSVLLEQDVER------RTRRNRWGC----WNHH--------ERKVDSTEALEESGLRFLTNAEDRLPDRSYCIYDYEDRHMVAFARPALEMGAVPAPGVRRMRPNIRQNSMVRKTKFRTKIQTKQEE---PQQLKVRTEFPESWLWFDEYISSNGEKKMSVKIPDTITTWHANGFALSASDGIGISKPTTIRGFQPFFISLTLPYSVKRGEILKIPATVFNYLDKCLVIGIELDESKDY--EELTSSQQKLCVCGGEAKTVKFGIKPKTLGKIDITVKGRSYEASSSVCGPNQVPISNVVAADALTKKLLVEAEGIKKEYSTSLFFCPNDHANGTFSDVISLDLPEKIVPGSVYAEIEFVGDLLGPSMDGLDKLLAMPYGCGEQNMLKFAPNVYIMDYLTATEQSDGKIVNKAKKFMQSGYQRELTYKHNNGGYSAFGKR--DKEASTWLTAFVLRTYAQAQKYIFXXXXXXXXSVNFLLKLQQRDGCFKKIGMVHHKEXXXXXXXXXXXXAFVVTALIEAGVTENDGRIQSAMRCMEQQLDSVKD------TYTLSVLAFALKMAG-SSKTDQLLKRLDDKATREGGLIHWDDGKPKPQYSPRTCYIPRAKSLDIEMTSYALMALISGEQPY---GNRREHLDIVKWLVKQRNSYGGFASTQDTCVGLQALAQYSASTFNGNFDMSIKTQSNKQSGGTDLDVSITKTNRLVLQKFHLQESLPVNLTVTATGQGCALAQANVKYNEPQPGKEES-FKLKVNVKK---DENSLTCRHQMKICGSYTGT-GKSNMALIDINMVSGFEPIINELEMQQQMTDVSYTQFEFIDGVLSFYFNDFSETTQCVDFFMEQVAQVEGRKPASVKIYDYYDKDNEATQMYKVGDC 3055
++L++ +GV+ S + +++ L + + ++P R+ ++ + E+V DS F++ NKV +SF ++ P S L + A+P S A+ AVD+S+ LM ++ + ++L +D+ + + C + H+ + D L+ GL+ TN++ R P I P++ GAV G + + V + I E+ P VR+ FPE+W+W ++S+G ++ V +PDTIT W A F LS G+GIS ++R FQPFF+ LT+PYSV RGE+ + ATV NYL KC+ + ++L S + + T ++ C+CG E +T+ + + PKTLG ++ +V + + S +CG V + + D + K LLVEAEGI++E + S C + S+ +SL LP +V S A +GD+LG +M + LL MPYGCGEQNM+ FAPN+Y+++YL T+Q +I KA ++ +GYQR+L YKH +G YS FG+R + +TWLTAFVL+T+AQA+ YIFID+ I S+ +L ++Q+ +GCF+ G + + + GGV T++A+V AL+E + + +++A+ C+E + K+ YT ++LA+A + G ++ ++L LD +A +E L+HW+ + +P+ Y +A S ++EMTSY L+A ++ QP G+ +IVKW++KQ+N+ GGF+STQDT V L AL++Y A+TF + T + Q+ T+ V N L+LQ+ L E LP +T TG+ C Q ++KYN P KE+S F LKV D + Q+ + SYTG SNM ++D+ MVSGF P+ ++M ++ + VS T E + + Y + T F + Q V KPA VK+YDYY+ D Y + C
Sbjct: 492 HYLIMAKGVIVRSGTHTLPVESGDMKGSFALSFPVESDVAPIARMFIFAILPDGEVVGDSEKFEIENCLANKVDLSFSPAQSPPASHAHLQVAAAPQSLCALRAVDQSVLLMKPEAELSVSSVYNLLTVKDLTNFPDNVDQQEEEQGHCPRPFFIHNGAIYVPLSSNEADIYSFLKGMGLKVFTNSKIRKPKSCSVI-------------PSVSAGAV-GQGYYGAGLGVVERPYVPQLGTYNVIPLNNEQSSGPVPETVRSYFPETWIWELVAVNSSGVAEVGVTVPDTITEWKAGAFCLSEDAGLGISSTASLRAFQPFFVELTMPYSVIRGEVFTLKATVLNYLPKCIRVSVQLKASPAFLASQNTKGEESYCICGNERQTLSWTVTPKTLGNVNFSVSAEAMQ-SLELCGNEVVEVPEIKRKDTVIKTLLVEAEGIEQEKTFSSMTCA---SGANVSEQLSLKLPSNVVKESARASFSVLGDILGSAMQNIQNLLQMPYGCGEQNMVLFAPNIYVLNYLNETQQLTQEIKAKAVGYLITGYQRQLNYKHQDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARSYIFIDEAHITQSLTWLSQMQKDNGCFRSSGSLLNNAIKGGVEDEATLSAYVTIALLEIPLPVTNPIVRNALFCLESAWNVAKEGTHGSHVYTKALLAYAFSLLGKQNQNREILNSLDKEAVKEDNLVHWERPQ-RPKAPVGHLYQTQAPSAEVEMTSYVLLAYLTA-QPAPTSGDLTSATNIVKWIMKQQNAQGGFSSTQDTVVALHALSRYGAATFTRTEKTAQVTVQDSQTFSTNFQVD--NNNLLLLQQISLPE-LPGEYVITVTGERCVYLQTSMKYNI-LPEKEDSPFALKVQTVPQTCDGHKAHTSFQISLTISYTGNRPASNMVIVDVKMVSGFIPLKPTVKMLERSSSVSRT--EVSNNHVLIYVEQVTNQTLSFSFMVLQDIPVGDLKPAIVKVYDYYETDESVVAEY-IAPC 1473 The following BLAST results are available for this feature:
BLAST of TCONS_00008255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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