TCONS_00008265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008265
Unique NameTCONS_00008265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008265 ID=TCONS_00008265|Name=TCONS_00008265|organism=Clytia hemisphaerica|type=transcript|length=924bp
GCCAACTGTGACTGAATAATAGAACAGGGTATGATCAATAAGGGGCTGTT
AATTGATTACTCGATGATAGAATAGGACAACgagaatttgaatatttttt
tgcatAACATATTCTCATTTAAAAGGAAATCTACTTTCAAGCATTGTTGG
TTGGTACTGGTATCTCTTGTATGATTTTgggtttgatatttttgaattga
aaattggTTAGTTTTGGCAAGGACGGTTATTTGAAAAGGCCGATTTTATT
GATTTCTCCATCATATTATACCGAATGGGATTTGAATGAATGATGTTTAA
ACAATTGCTGGTTTACCATGTGCTGGCTCTTATTATCTCCACAAGATatt
tgGTGGAATGTGTAATCTCATCAGAAGAATGCAGCAAGATTTTCACCGGT
CAAGGTGGTGTCATCTTAACACCGGACTACCCGAGCGAATATCCGGACGA
ACTTGCTTGTTCTTGGGCCATCAAGGTTCCGGCAGATAAACGAATCAAGA
TCTTTTTCGAGGATTTTCAATTAGAAAAGGCTGCTTCATGTTTTGATCaa
cttgttctaagagatggcGTCGATGGACCTTTCTTAGGAGAATTTTGCGG
CACAGATGCCAAAGGAATGACTGTGACGTCATCAGCAAATACTCTCATGG
TGCAATTTGTATCAGATGGTAGCGTCGGTGATCGCGGTgtcaaaattgtt
tgggagcAAATCCCCAAAATCACTATCACAGATATTAATAAAGTATCATT
CCAAGACCCATGGCTTGGTAAAGTATCGCCAGCCGGTGTAAAGATAATCG
AGAGTGGATTATCAAGTATGAGTATATGGATTGTTGATCAGTTTAATGAT
GTCCATTATTATGATGGTTTCTCCTGGGACGTTCTTAAAGGTAAAGCCAA
AACACTGAGCGTTGGCGAGACTGN
Run BLAST on NCBI

transcript from alignment at sc0000084:140835..148044+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008265 ID=TCONS_00008265|Name=TCONS_00008265|organism=Clytia hemisphaerica|type=transcript|length=7210bp|location=Sequence derived from alignment at sc0000084:140835..148044+ (Clytia hemisphaerica)
GCCAACTGTGACTGAATAATAGAACAGGGTATGATCAATAAGGGGCTGTT
AATTGATTACTCGATGATAGAATAGGACAACgagaatttgaatatttttt
tgcatAACATATTCTCATTTAAAAGGAAATCTACTTTCAAGCATTGTTGG
TTGGTACTGGTATCTCTTGTATGATTTTgggtttgatatttttgaattga
aaattggTTAGTTTTGGCAAGGACGGTTATTTGAAAAGGCCGATTTTATT
GATTTCTCCATCATATTATACCGAATGGGATTTGAATGAATGATGTTTAA
ACAATTGCTGGTTTACCATGTGCTGGCTCTTATTATCTCCACAAGATGTA
AGTAAAGAGTTCTTTCCCCTTGTTGTGACATTTCTTGTGCTAAATATTTT
AATTGGGTTTGCGGTCTTGTAATTATACTTAAAGGGTAATACTAGATTTT
TGATCGGCTTATTATTCGTAGCAACTAACTTTTAGTGGTTTTTTAGTAAT
TCCATTAACAATGATTTGATGATTTGAgctcatgttttttttaaatttta
tatttgGTTTGATTCTAAAAATTCTTGTCAACTTAAATTTAGCTCAAATT
TGAAAACCAATCAATAATAAAAAGGCTTTTGTACAATTTGTTTACTTCTT
ATAAAAGAGCCTTGACGTTTCGAGTTTGAATTTAGCTATAGATGCAATtg
actctctataattcgatcttcacagggtcaaaaactttcttcgaactaga
gaaagattcgaattacaaagagtAATTTATAAAGCCACTTTCCAGCTTAG
GGgatcaatattttagttcgaattacaaaaaaattcgaatATTAAAGGTT
CGAATgagagagagagttgactgaaGGTCCTAAAATGTATATAACAAGTC
AAATACCACAGAAAAGATGAGCTTTAGGTATAAACTATATCTCTTCGTAC
AACAGTCAATAAACACTGTTTCAAACAGCTACTGATCATGTCTGAAAGAA
CGTGTGTCAGGtaaattgaaatttgagaaatgccttaaaagtaaaaatga
cctcctccTACAGTTTTAAGTAAAGGTATCCAACGCAACAGATTAAGTCA
TTCATGATATATCTCTTAAGATGTatgctacatgttttttttataagcat
tgcacttgtaagcatatccaggctcagatatggggaaaaattaagcatat
ggcaagcattacttgagcctacgaaaaatgtttttttcctgattttgttt
tttttttggctggaattttacggattttcagtatttccacgtgaattttg
ttttggatataagcatccctcaagcattttttcagcctttcgacctaagc
atctctaagcctgttttcgtatttttttatgcttataaaaaagaacatgt
AGCTTTTAAGGTCTCCTAACCTGAGAaaacttacacgttttttttataag
atcaagCTATATAAGAATGTAAGGCTTCGATGCCCAAAATGTTAACTACA
AGTTAAAAACACTTTAAGGCTTTATTGACTTTCAAACACCCAATTTTTTA
Ggaaatgcacaaaaatacttacgaaatttttaaattaaaaacaattcaac
aacattttaggcttgaaattcaaaaagttaagaacatgcgAAGGCAtcat
tttggatgctcttataaaaacgtaTATAGCTCAAGTCATGGACAGTTATC
CTCGTAATTAAAAATTTCTCTAGTTGTAACAGGAGCTCAAAAGTTCTCTA
AGATTTCTTGTTCCTTATTTATCTTATTGAGGGGAGTCAAGGAAAAAgat
cttacaaagtaaatattttgtatatCACACTCAATCAACCCCTTTTCAGT
TGATCTATATGACGGTAAATAGagattattttgatatttgagATTTCTGC
GAACACCAATAGTATACCCCTTTTTAACGCGTCTCTTTATCACCCCTTAG
GCTGAAATGATTTGTCTTTTTAACCTATTCATGACAATTTTAGAGAACCA
AAACTTTGACAGTTTTCAAAATCTACTTTAAGCAAGACTCGTTACTAGTA
TTTTGGTTGACTATACAAAAAGAGAAATAGCTCAGATTTTGAAATGAGCC
CTTAGGTCTTTCTTACAAAACATTCCCTTAACTATCACAGCGTTGATGAA
ACCTGgtccaaaagaaattttctcaaGCAAGCATTTTTATTCAAGATTTT
GTGATCCCTAGGTGTGTACAGCACTACTTCCCTTAACGACGTCAAAATCG
GCTTTTTGTTAAATACATAGAGCGCTTGATGATTTAATCGTAAAACAAAC
TTAAATAAGGAAAGCTTTATTAATCTTCTTACCATAGACTTGTTAATGCT
TTTTAATGAGAGAGTGTTAATTTCAGCACTTTGTTTGATGATGCCTCTAG
CTGATGActtcattgagtttcaagctgaaggctagaggtcaatcttcaac
ctttcccaAGCAAGCAAAagtttaaacgttttttatgagaacatccaaca
ttttttaagccttcggatgttcttaacattttgagatttaagcctaaaaa
tgttctgagcatgttcttattttgaccattttcctaagaaatagagCGTt
cttgagtccacaaagccttaaaatgttcttaacttgttcttaacattttg
gccggccagcgaagccttatgttcttatatagtttgttcttataaaaaaa
cgtgtactataCTGAAAGTAACTATTTAGATTTACGCCGCTTATCGGATG
ACCGAAATGAAAcaactttctttgttttcgcgtTTGGCGTTTTTCGAATT
CTGGCGGTACTTCTGGCGGTACTTCTGGCGGTTATTCTGGCGGTTATTCT
GGCGGTAATTCTGGCGGTACTAAGTTGTTTCAAATCCTACGTAGACGATT
GGACTTAAGCCTTCAGCCATGCCTCAAAATAGCTCGCATGTTTGTCACTA
GTCTTATTGTTTGAATTAGTGGCAAACAAACACCCGGTCTTTTTTAGGTG
CTTccatataaaacattacgtcatgaatatcatgaatataggTTCACATG
ATGTAACATTCAAAATCTCTTAAAGGGCTTGACTTCATCTTGGATCTTAG
AGAGTAAAATTGGTTTTACGTCACTCCCATTTCCTCTCGTAATCACTAGC
CTACTGGATAACTGTCTTTATCATTGAATTGAAGTCAACAGTCTATTTAT
AGcgattttttcaggaatttacaaaattatttcaataaaTGTTTCGCTGT
ATGCTTTAGGAAATGAGAAAATCCTCTTGTCAACTACACAAGCTGCGCTG
TTATGAAAGTATTTGACAAATCTGTAGGCATAAACCAATCGTTATTTTCT
CGTTCATTGATAGCGAACAAAGACGCCATTGAGAAAATAAGAGATGTGTC
CACTTTTCTAGTGTCCTAAAATATGGAAATTTAATACccccacttttttc
attttttggaagGAAGGAAGTACCTACTAAAAAATCTAAACAGTTCCCCC
TCTCTGTGTTATCTGGCACCTGatgtgaaaaactttttccgacCTGAATC
TGAACATCGGGGGGGGGGGAGATTTCAAACATCAATACCTTTTAGCCTTA
GAAGAAGAATTTAGCCTGAACGTGCAACGAATTTTGCAGAAAAGGtctga
atgtttttttttgggtgATATTCTCCTCATAACAGCTCCTGACCATCGCG
CGGTGGTTTATTGTCACTTTATGCAACAAAGCCTGATGAATCGAGTCAAG
AATTTCCTACTCCCCTCCTGACTATCCCTCCTTTAAGCTTAAGCATGGgt
ggccgccaatacgccatcacAATCAGAGAATACTTTTAACTTTACGAGCA
TCATAATccttaacaaaaaaatcacttatTAGATGGAAATATAAGCTCAG
TTACTAAAAGATTATCACCTATTTACATCAGACAGTCAGggctataataa
aacaaatagcTCGATAATCCTTTCGAAAGGATATTAAGATTAGATATGTA
AAATGGGAAGTCGTTTTGATTAAGAATGCCAAAttcgaatttctattatt
taCTTCTGTTTGAAAACTGTCCCCCTCCCCCTTAAATGTACATGACTAGC
CAGGTTAAGTGTCAATAGATGACATACTGTGATCTGATAGAGGGCGGGTG
AGCGTCAGGCGGGCGTAATGTTTGGTAAGTTGGGACGTCGTTCCTTAATC
AAGGCTCATAACTACCGTCTCCTTCACGCCACATGATTTCTTCGCAGGCT
AAAAGAAAggtattgaattgaattgaattgaatatattttcgctgcaacg
cagcaggataaccccttactctaatacaatggggaaactagaagaaactg
aaaaattgttacaaaactaaagaaaaaaaaattgaataaacgattatcgt
aatattaataataacatcaaaatttGTCTACCGGGACCTGATCCAAATGT
ACCAATACGAAGAAATTGGTCTACCGTGGTCAAAGTGAAACTAATACTGT
ACttctatatttgaaaaaaaattgaaagctaTACACTCCTCTTGGGGTTG
Gttcaaaattttaacatctgatcaaaaagtgagcaaagcccaaataattt
ctcaacgcaatttcaagtaagaaacaatagAGAGAAACAAAAGTCTTCCA
GGCCGGGATTTTTTATACGGTCTTTGACGTGAACGATCCTGGACTGTAAA
ACGTTTTTGAGTTACTATTTCAatacttttcaaatattttactatttatt
tttagatttgGTGGAATGTGTAATCTCATCAGAAGGTATACCGTCACTTA
CTTTTTCACTGATCTCTATTTTCATTCCCTGGATCAAGCTCTTCCCTTTG
GAGAAGATCTTAANCTTACTTTTTCACTGATCTCTATTTTCATTCCCTGG
ATCAAGCTCTTCCCTATGGAGAAGATcttaattttggcaaatataACCTA
AGTTAGCGGCAGTAGAGTtagtctgaattgcagacctctacaaaacccca
ggtagtatatcTATAGGGAGCAAGAATCCGTTAgaggatgccagcagcct
acagTAGAATTTGACGTACTTCCGACACTGTTTAATCCACCCAGGTCTTC
GCCTAAGTTTATCAATCTTTCCCGTATCATTCAGATATTAATTGTTATCA
TTAACCTTTTACCTTATCCAATCAGAATGCAGCAAGATTTTCACCGGTCA
AGGTGGTGTCATCTTAACACCGGACTACCCGAGCGAATATCCGGACGAAC
TTGCTTGTTCTTGGGCCATCAAGGTTCCGGCAGATAAACGAATCAAGATC
TTTTTCGAGGATTTTCAATTAGAAAAGGCTGCTTCATGTTTTGATCaact
tgttctaagagatggcGTCGATGGACCTTTCTTAGGTGAGTTAAACGTTT
TTCTTATTAGAACATCCGAACTTTTGGAgctttcaaatgttcttaacttt
tagagttttaggcctaaaaatgttcttagcttgttcctAATTTTACACGa
ctttgtgagtattttttttttttaataagttatTTTaaagtccataaagc
cttaaaatgttcttgatatTTCAATCATCGAATCATTATGTTCTTCTAta
gtttgttcctataaaaagttGTGTGTCTTCATTTGCTGCAGTTCTTAAAA
TTTCTATAAAGGTGATGGTTTTTTTTGATAGCTAtagatttctttttcaa
taattaaGCATGGTGTTTTCAAAAACgcatttatttctcaaattgatgcc
attctttttttgacatttttgtagGAGAATTTTGCGGCACAGATGCCAAA
GGAATGACTGTGACGTCATCAGCAAATACTCTCATGGTGCAATTTGTATC
AGATGGTAGCGTCGGTGATCGCGGTgtcaaaattgtttgggagcAAATCC
CCAAAATCACTATCACAGATATTAATAGTAAGTCTATCATCCTTCGATTT
ACTATTGACTCTCTCCAACCTgttcccgtgtatcccaggctttatttgcG
TTACTTATGAACGCCAGAGCTATTATCTggtgctatcagtaagcatcaaa
aagctgataatacgcagggaacaaGGTTGGACTCTCTCTAACCCGATatt
caagggaccaaaaattttcttcgaattatagaacAATTAGAGCTACGGAA
AGTATCTTGGATAACTTCCCACCTGAGGGGACAAATGTTTTAGTTCGCAT
TAtataaagattcgaatagtagtAACTCGGATTAAGGAAAATTGACTGTA
TTTTTATTTGAGTAGCTTTCCTACAATAATCCTTCTTGTATTACCGTCAT
TCTTTCCCGATCCCTAACTTTTTTCATTGCTTCCATAAGCGTCAAAGTCT
GTCTTACAGCTTAATCCAACAGTTGTAACAAGGATAAATTTGAGTTTCGT
TGGCTTAAAGCAATGTTCTTTGTAATTCATTTCTACAAGTTGATAAAGAA
GACATTATTCTTCATTAAGTTTGATCCAAAAGACTGAAAGATTAAAAAAG
ATAGGCACTAGGTTTCTTTTGCTTTCGATTGGCTAGACTGTAATCCCAAA
TGTCTTATCTCCTTTAGAAGTATCATTCCAAGACCCATGGCTTGGTAAAG
TATCGCCAGCCGGTGTAAAGATAATCGAGAGTGGATTATCAAGTATGAGT
ATATGGATTGTTGATCAGTTTAATGATGTCCATTATTATGATGGTTTCTC
CTGGGACGTTCTTAAAGGTAAAAAACcattttctcgttttttttttcaca
gagAAGAGCCTCATGGGTcatgagaaaaaaacattaacgTCAAAGAGTAC
TAAAGATTAAGAAAAATCATAATGCCTTAAAGTTGTGACTATTTTTAATG
TCCTTGGCCCGACTTGGCTTCTAAGCTGATTTTAAGAGTCCTTCATTATT
GTAATTGTGAATTGCGTTCCAAACAAACGCATTTCCCTATTtcgacgtca
atgcaatgatttCTTTGAATCTTCTTCAAGCaaagcttcttttaattgac
aACTTTCTGCCCGCTTTTTGCCTACTTCTTCAAGAAGTTTTACAGAAAGT
CAGCCTGCTAGACTAGaactaaaattcttttttctcctttgGTCTGTAGG
TAAAGCAACAATTTCTTTGAATCTtcttcaagcaaagattttaactgcca
actttcaacccactttttttttgtagGTAAAGCCAAAACACTGAGCGTTG
GCGAGACTGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004647XLOC_004647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008265-exon-sc0000084-1491911889:140835..141181TCONS_00008265-exon-sc0000084-1491911889:140835..141181Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1510915933:140835..141181TCONS_00008265-exon-sc0000084-1510915933:140835..141181Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1575043694:140835..141181TCONS_00008265-exon-sc0000084-1575043694:140835..141181Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1491911889:145590..145619TCONS_00008265-exon-sc0000084-1491911889:145590..145619Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1510915933:145590..145619TCONS_00008265-exon-sc0000084-1510915933:145590..145619Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1575043694:145590..145619TCONS_00008265-exon-sc0000084-1575043694:145590..145619Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1491911889:146010..146219TCONS_00008265-exon-sc0000084-1491911889:146010..146219Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1510915933:146010..146219TCONS_00008265-exon-sc0000084-1510915933:146010..146219Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1575043694:146010..146219TCONS_00008265-exon-sc0000084-1575043694:146010..146219Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1491911889:146609..146761TCONS_00008265-exon-sc0000084-1491911889:146609..146761Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1510915933:146609..146761TCONS_00008265-exon-sc0000084-1510915933:146609..146761Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1575043694:146609..146761TCONS_00008265-exon-sc0000084-1575043694:146609..146761Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1491911889:147402..147551TCONS_00008265-exon-sc0000084-1491911889:147402..147551Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1510915933:147402..147551TCONS_00008265-exon-sc0000084-1510915933:147402..147551Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1575043694:147402..147551TCONS_00008265-exon-sc0000084-1575043694:147402..147551Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1491911889:148011..148044TCONS_00008265-exon-sc0000084-1491911889:148011..148044Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1510915933:148011..148044TCONS_00008265-exon-sc0000084-1510915933:148011..148044Clytia hemisphaericaexon
TCONS_00008265-exon-sc0000084-1575043694:148011..148044TCONS_00008265-exon-sc0000084-1575043694:148011..148044Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:140835..148044 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.095464	0.14166	0.0628252	0.162014	1.71369	0.328951	0.648307	1.35415	0.495209	0.89954	0.895556	0.21281	0.123864	0	1.19388	1.56543	2.57654	1.90904	1.30692	0.603615	0.945244	0	1.4362	1.12897	0.121476	0.143939	0.10296
Blast
[Close]
BLAST of TCONS_00008265 vs. Swiss-Prot (Human)
Match: AGRG6 (Adhesion G-protein coupled receptor G6 OS=Homo sapiens GN=ADGRG6 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 3.100e-17
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 2 
Query:  380 CSKIFTGQGGVILTPDYPSEYPDELACSWAIKVPADKRIKIFFEDFQLEKAASC-FDQLVLRDGVDGPFLGEFCGTDAKGMTVTSSANTLMVQFVSDGSVGDRG 688
            C  + +   G   +P YP++YP+  AC W ++ P    I+I F DF +E+A +C +D L L +G       +FCG  AKG++  SSAN + V F SD S+  +G
Sbjct:   41 CRVVLSNPSGTFTSPCYPNDYPNSQACMWTLRAPTGYIIQITFNDFDIEEAPNCIYDSLSLDNGESQT---KFCGATAKGLSFNSSANEMHVSFSSDFSIQKKG 141
The following BLAST results are available for this feature:
BLAST of TCONS_00008265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRG63.100e-1737.50Adhesion G-protein coupled receptor G6 OS=Homo sap... [more]
back to top