|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008288 ID=TCONS_00008288|Name=TCONS_00008288|organism=Clytia hemisphaerica|type=transcript|length=2868bp
GTTTATTTGAGAGTAAAGAGTGcatgtttttaaatattgattCAGTGTTG
TACTTGAGTTTCACCTTCTAAATTCTCTTTACATTCAGGATAAAAAACTA
GAGAAAAATATCCAAAAGTGACAAAGAGTCTATTATTCTTTCAGTTTCAG
TACAAAATTTTGCCTTCTTCTCTTGTGCACACATAAATATTATTTGATTC
GCGACTCTAGCCTcaccataaaaaatgaaaatagcaATAGAAGGATGTGC
GCATGGTGAACTAAACAAGATCTATGAAAGCATACAATACATTCAAGGAA
GAGAGAAAATAAAGATAGATTTATTGATATGTTGTGGAGACTTTCAATCA
GTCCGGAATAAAGATGACATGCTTAGCATGGCCGTCCCTCCCAAATATCG
TGAAATGAAAGATTTTCCTGATTATTATAGTGGTAAGCGTAAAGCTCCTA
TTTTGACATTGTTTATTGGTGGAAATCATGAAGCTGCTAATTATTTGTAT
GAGCTACCTTATGGAGGCTGGGTTGcagaaaatatttattatctTGGGTA
TGCTGGTGTTATCAATTTTGCTGGTTTGCGTATTGGAGGGTTGACTGGTA
TATTCAAGTTTCATGATTACGGGAAATCTCATTATGAAAAACCACCTTTT
GATGAGCAATCAAAACGTTCATTTTATCATGTTCGTAGTTGTGAtgtttc
aaagttgaaattatTATCTGGTACATCGTTTGATATATTTTTGAGTCATG
ATTGGCCAAAAAATATCTATAATTTTGGTAACAAGAATCAGTTGATGCGC
TTTAAACCCTTCTTACGtgaagaaattgaaagtggTACTTTGGGTAGCAA
TGCNTcatgtttttaaatattgattCAGTGTCGTACTTGATTTTCACCAC
TCTTTACATTCAGGATAAAAAACTAGAGAAAAATATCCAAAAGTGACAAA
GAGTCTATTATTCTTTCAGTTTCAGTACAAAATTTTGCCTTCTTCTTGTG
CACACATAAATATTATTTGATTCGCGACTCTAGCCTcaccataaaaaatg
aaaatagcaATAGAAGGATGTGCGCATGGTGAACTAAACAAGATCTATGA
AAGCATACAATACATTCAAGGAAGAGAGAAAATAAAGATAGATTTATTGA
TATGTTGTGGAGACTTTCAATCAGTCCGGAATAAAGATGACATGCTTAGC
ATGGCCGTCCCTCCCAAATATCGTGAAATGAAAGATTTTCCTGATTATTA
TAGTGGTAAGCGTAAAGCTCCTATTTTGACATTGTTTATTGGTGGAAATC
ATGAAGCTGCTAATTATTTGTATGAGCTACCTTATGGAGGCTGGGTTGca
gaaaatatttattatctTGGATATGCTGGTGTTATCAATTTTGCTGGTTT
GCGTATTGGAGGGTTGACTGGTATATTCAAGTTTCATGATTACGGGAAAT
CTCATTATGAAAAACCACCTTTTGATGAGCAATCAAAACGGTCATTTTAT
CACGTTCGTAGTTGTGATGTTTCAAAGTTGAAACTATTATCTGGTACATC
GTTTGATATATTTTTGAGTCATGATTGGCCAAAAAATATCTATAATTTTG
GTAACAAGAATCAGTTGATGCGCTTTAAACCCTTCTTACGtgaagaaatt
gaaagtggTACTTTGGGTAGCAATGCAGCAGAAGATTTGCTACACTCTTT
GAAACCAAAATACTGGTTCAGTGCTCACATGCATGCCAAATTCTCAGCAA
TAGTACCTCATAAAGATGGTACCTCTACCAAATTTTTAGCTCTCGATAAA
TGTTTACCAAATCGAAATTTCTTGCAAATTCTTGATCTTCCAGAGGCGAC
AGAGGATCTCACATTTAAACATGATCCGTACTGGCTTTGTATTTTGAAGA
ATACACAACAGAGCTTTTTCAAGCGCTCATTTTGTTCTTCTTTGCCAGAT
GAGATGAAACCAACAGAATTTGATGTTCAGAAATTCTTAGAGCAGGAGCC
AGATCTCTCTCTGTATCCTTTTGTTCAATCACCGCCTGGATCAAATCCGC
AAACAGAAGAATTTTGTGAACGTTTTGGAATCCCAAATCCATGTCAATTC
ACACCAAAATCTCAAGCCTCGTCATCAACTATTGCTGCAACGCGTAAGCT
CAATATTCCAAAACCTAAATTGAATCTGCCAAAACCAATGAAAGATGATT
TCGAGGATATCCAGCAaccaaaagaaaacaaaagtgtCACATCAAGGCAA
TCcgatgatgattttgatgaccTTATTAACCCAAACAACATTTCTTCAAA
TCCAGATGAAATTGATTTATCTGAAAAGGAATCAGACAGTAGCAGTGATT
CTGATAGTGACTCTGAATCCTCAAAGATCTCCAAAGCTGAATTGACCAAC
AAGAACTTATCATCCCTCCCATCGTTCATTGAAACACCTGTGAAGCAAAC
AGCTGAGAAGCGATCATCATCAGATTCTGCTGGAGATTCAAGCTTTACCG
ATTCTTCTGTTTCAGATACCACCAGTATTAAGAAACCGAAACTTATAAGA
AGAAATCAAAACTTATATACACCATCAAAGGATGAATAAGATAAACGTTT
AGTAATTGCTGAATTACTGGTCTATTCAAATATTGTACTCTATAGGTCCC
AGAAAACTTCCCCTCGAATTTCTTTTAATATTTCTAATATTACCACAGAA
ATTCTTTTTATAGTagtatttttattaaatttttctgCTTCTAATTATTT
GTTTTAACTCGAACACTTTTGTGTTCGTTACGTGTTTTCGatttaacttt
taaattttaacttGTATTTAGAGCTTTTTATATTCATAcgtaaattttca
aatatttataaaaagagG Run BLAST on NCBI transcript from alignment at sc0000084:583473..586340+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008288 ID=TCONS_00008288|Name=TCONS_00008288|organism=Clytia hemisphaerica|type=transcript|length=2868bp|location=Sequence derived from alignment at sc0000084:583473..586340+ (Clytia hemisphaerica)
GTTTATTTGAGAGTAAAGAGTGcatgtttttaaatattgattCAGTGTTG
TACTTGAGTTTCACCTTCTAAATTCTCTTTACATTCAGGATAAAAAACTA
GAGAAAAATATCCAAAAGTGACAAAGAGTCTATTATTCTTTCAGTTTCAG
TACAAAATTTTGCCTTCTTCTCTTGTGCACACATAAATATTATTTGATTC
GCGACTCTAGCCTcaccataaaaaatgaaaatagcaATAGAAGGATGTGC
GCATGGTGAACTAAACAAGATCTATGAAAGCATACAATACATTCAAGGAA
GAGAGAAAATAAAGATAGATTTATTGATATGTTGTGGAGACTTTCAATCA
GTCCGGAATAAAGATGACATGCTTAGCATGGCCGTCCCTCCCAAATATCG
TGAAATGAAAGATTTTCCTGATTATTATAGTGGTAAGCGTAAAGCTCCTA
TTTTGACATTGTTTATTGGTGGAAATCATGAAGCTGCTAATTATTTGTAT
GAGCTACCTTATGGAGGCTGGGTTGcagaaaatatttattatctTGGGTA
TGCTGGTGTTATCAATTTTGCTGGTTTGCGTATTGGAGGGTTGACTGGTA
TATTCAAGTTTCATGATTACGGGAAATCTCATTATGAAAAACCACCTTTT
GATGAGCAATCAAAACGTTCATTTTATCATGTTCGTAGTTGTGAtgtttc
aaagttgaaattatTATCTGGTACATCGTTTGATATATTTTTGAGTCATG
ATTGGCCAAAAAATATCTATAATTTTGGTAACAAGAATCAGTTGATGCGC
TTTAAACCCTTCTTACGtgaagaaattgaaagtggTACTTTGGGTAGCAA
TGCNTcatgtttttaaatattgattCAGTGTCGTACTTGATTTTCACCAC
TCTTTACATTCAGGATAAAAAACTAGAGAAAAATATCCAAAAGTGACAAA
GAGTCTATTATTCTTTCAGTTTCAGTACAAAATTTTGCCTTCTTCTTGTG
CACACATAAATATTATTTGATTCGCGACTCTAGCCTcaccataaaaaatg
aaaatagcaATAGAAGGATGTGCGCATGGTGAACTAAACAAGATCTATGA
AAGCATACAATACATTCAAGGAAGAGAGAAAATAAAGATAGATTTATTGA
TATGTTGTGGAGACTTTCAATCAGTCCGGAATAAAGATGACATGCTTAGC
ATGGCCGTCCCTCCCAAATATCGTGAAATGAAAGATTTTCCTGATTATTA
TAGTGGTAAGCGTAAAGCTCCTATTTTGACATTGTTTATTGGTGGAAATC
ATGAAGCTGCTAATTATTTGTATGAGCTACCTTATGGAGGCTGGGTTGca
gaaaatatttattatctTGGATATGCTGGTGTTATCAATTTTGCTGGTTT
GCGTATTGGAGGGTTGACTGGTATATTCAAGTTTCATGATTACGGGAAAT
CTCATTATGAAAAACCACCTTTTGATGAGCAATCAAAACGGTCATTTTAT
CACGTTCGTAGTTGTGATGTTTCAAAGTTGAAACTATTATCTGGTACATC
GTTTGATATATTTTTGAGTCATGATTGGCCAAAAAATATCTATAATTTTG
GTAACAAGAATCAGTTGATGCGCTTTAAACCCTTCTTACGtgaagaaatt
gaaagtggTACTTTGGGTAGCAATGCAGCAGAAGATTTGCTACACTCTTT
GAAACCAAAATACTGGTTCAGTGCTCACATGCATGCCAAATTCTCAGCAA
TAGTACCTCATAAAGATGGTACCTCTACCAAATTTTTAGCTCTCGATAAA
TGTTTACCAAATCGAAATTTCTTGCAAATTCTTGATCTTCCAGAGGCGAC
AGAGGATCTCACATTTAAACATGATCCGTACTGGCTTTGTATTTTGAAGA
ATACACAACAGAGCTTTTTCAAGCGCTCATTTTGTTCTTCTTTGCCAGAT
GAGATGAAACCAACAGAATTTGATGTTCAGAAATTCTTAGAGCAGGAGCC
AGATCTCTCTCTGTATCCTTTTGTTCAATCACCGCCTGGATCAAATCCGC
AAACAGAAGAATTTTGTGAACGTTTTGGAATCCCAAATCCATGTCAATTC
ACACCAAAATCTCAAGCCTCGTCATCAACTATTGCTGCAACGCGTAAGCT
CAATATTCCAAAACCTAAATTGAATCTGCCAAAACCAATGAAAGATGATT
TCGAGGATATCCAGCAaccaaaagaaaacaaaagtgtCACATCAAGGCAA
TCcgatgatgattttgatgaccTTATTAACCCAAACAACATTTCTTCAAA
TCCAGATGAAATTGATTTATCTGAAAAGGAATCAGACAGTAGCAGTGATT
CTGATAGTGACTCTGAATCCTCAAAGATCTCCAAAGCTGAATTGACCAAC
AAGAACTTATCATCCCTCCCATCGTTCATTGAAACACCTGTGAAGCAAAC
AGCTGAGAAGCGATCATCATCAGATTCTGCTGGAGATTCAAGCTTTACCG
ATTCTTCTGTTTCAGATACCACCAGTATTAAGAAACCGAAACTTATAAGA
AGAAATCAAAACTTATATACACCATCAAAGGATGAATAAGATAAACGTTT
AGTAATTGCTGAATTACTGGTCTATTCAAATATTGTACTCTATAGGTCCC
AGAAAACTTCCCCTCGAATTTCTTTTAATATTTCTAATATTACCACAGAA
ATTCTTTTTATAGTagtatttttattaaatttttctgCTTCTAATTATTT
GTTTTAACTCGAACACTTTTGTGTTCGTTACGTGTTTTCGatttaacttt
taaattttaacttGTATTTAGAGCTTTTTATATTCATAcgtaaattttca
aatatttataaaaagagG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008288-exon-sc0000084-1491911889:583473..586340 | TCONS_00008288-exon-sc0000084-1491911889:583473..586340 | Clytia hemisphaerica | exon |
| TCONS_00008288-exon-sc0000084-1510915933:583473..586340 | TCONS_00008288-exon-sc0000084-1510915933:583473..586340 | Clytia hemisphaerica | exon |
| TCONS_00008288-exon-sc0000084-1575043694:583473..586340 | TCONS_00008288-exon-sc0000084-1575043694:583473..586340 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:583473..586340 + |
Blast
BLAST of TCONS_00008288 vs. Swiss-Prot (Human)
Match: DBR1 (Lariat debranching enzyme OS=Homo sapiens GN=DBR1 PE=1 SV=2) HSP 1 Score: 368.622 bits (945), Expect = 1.886e-115 Identity = 189/379 (49.87%), Postives = 253/379 (66.75%), Query Frame = 1
Query: 1048 MKIAIEGCAHGELNKIYESIQYIQGREKIKIDLLICCGDFQSVRNKDDMLSMAVPPKYREMKDFPDYYSGKRKAPILTLFIGGNHEAANYLYELPYGGWVAENIYYLGYAGVINFAGLRIGGLTGIFKFHDYGKSHYEKPPFDEQSKRSFYHVRSCDVSKLKLLSGTSFDIFLSHDWPKNIYNFGNKNQLMRFKPFLREEIESGTLGSNAAEDLLHSLKPKYWFSAHMHAKFSAIVPH------KDGTSTKFLALDKCLPNRNFLQILDL---PEATEDLTFKHDPYWLCILKNTQQSFFKRSFCSSLPD--------EMKPTEFDVQKFLEQ-EPDLSL--------YPFVQSPPGS--------NPQTEEFCERFGI 2082
M++A+ GC HGEL+KIYE++ + R +DLL+CCGDFQ+VRN+ D+ MAVPPKYR M+ F YYSG++KAP+LTLFIGGNHEA+N+L ELPYGGWVA NIYYLG AGV+ + G+RIGG++GIFK HDY K H+E PP++ + RS YHVR+ +V KLK L DIFLSHDWP++IY++GNK QL++ K F R+E+E+ TLGS AA +LL LKP YWFSAH+H KF+A++ H + +TKFLALDKCLP+R+FLQIL++ P A + L + D WL IL+ T ++P+ + TE +++ LE+ DL + + S P + NPQT EFC + GI
Sbjct: 1 MRVAVAGCCHGELDKIYETLALAERRGPGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRHMQTFYRYYSGEKKAPVLTLFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRIGGISGIFKSHDYRKGHFECPPYNSSTIRSIYHVRNIEVYKLKQLK-QPIDIFLSHDWPRSIYHYGNKKQLLKTKSFFRQEVENNTLGSPAASELLEHLKPTYWFSAHLHVKFAALMQHQAKDKGQTARATKFLALDKCLPHRDFLQILEIEHDPSAPDYLEY--DIEWLTILRATDDLINVTGRLWNMPENNGLHARWDYSATEEGMKEVLEKLNHDLKVPCNFSVTAACYDPSKPQTQMQLIHRINPQTTEFCAQLGI 376 HSP 2 Score: 283.878 bits (725), Expect = 4.749e-84 Identity = 128/211 (60.66%), Postives = 167/211 (79.15%), Query Frame = 3
Query: 225 MKIAIEGCAHGELNKIYESIQYIQGREKIKIDLLICCGDFQSVRNKDDMLSMAVPPKYREMKDFPDYYSGKRKAPILTLFIGGNHEAANYLYELPYGGWVAENIYYLGYAGVINFAGLRIGGLTGIFKFHDYGKSHYEKPPFDEQSKRSFYHVRSCDVSKLKLLSGTSFDIFLSHDWPKNIYNFGNKNQLMRFKPFLREEIESGTLGSNAS 857
M++A+ GC HGEL+KIYE++ + R +DLL+CCGDFQ+VRN+ D+ MAVPPKYR M+ F YYSG++KAP+LTLFIGGNHEA+N+L ELPYGGWVA NIYYLG AGV+ + G+RIGG++GIFK HDY K H+E PP++ + RS YHVR+ +V KLK L DIFLSHDWP++IY++GNK QL++ K F R+E+E+ TLGS A+
Sbjct: 1 MRVAVAGCCHGELDKIYETLALAERRGPGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRHMQTFYRYYSGEKKAPVLTLFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRIGGISGIFKSHDYRKGHFECPPYNSSTIRSIYHVRNIEVYKLKQLK-QPIDIFLSHDWPRSIYHYGNKKQLLKTKSFFRQEVENNTLGSPAA 210
The following BLAST results are available for this feature:
|
