TCONS_00008309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008309
Unique NameTCONS_00008309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008309 ID=TCONS_00008309|Name=TCONS_00008309|organism=Clytia hemisphaerica|type=transcript|length=272bp
GAAGGACTTGAGAAGGAGAAAAACTCAATTGATAGGTTCGTTCGTTCATT
GATGAGTTCCTTCCTTATAAATTCGTTCTCCACTTGGTTTTAAGTATATG
TTATTAAAGAGTTTTGTAAGATAAGGAGAAACCACGGCGACTTGTTGTAT
CGTCAGATTTGAAGGTGATCCATATAGCGTTGTATTGGAGTGTCATTCTC
TTTGGTAATGTATCACCACATAGCCTAGCTACCTCGGCTCCATACTGTGT
ACCACCAGCTCGGATCTGAACA
Run BLAST on NCBI

transcript from alignment at sc0000084:194704..195241-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008309 ID=TCONS_00008309|Name=TCONS_00008309|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at sc0000084:194704..195241- (Clytia hemisphaerica)
GAAGGACTTGAGAAGGAGAAAAACTCAATTGATAGGTTTGTTCGTTCATT
GATGAGTTCCTTTATAAATTCGTTCTCCATTTGGTTTAGTATCCAGGTTA
AAGTATGTTATTAAAGACTTTTGTAAGATATGGAGAATCTAAAAGCCGCA
CTAAAACTCAATTGATAGGTTCGTTCGTTCATTGATGAGTTCCTTTATAA
ATTCGTTCTCCACTTGGTTTAGTATCCAGGTTAAAGTATGTTATTAAAGA
CTTTTGTAAGATAAGGAGAATCTAAAAGCCACACTAAAACTCAATTGGTA
GGTTCGTTCGTTCATTGATGAGTTCCTTCCTTATAAATTCGTTCTCCACT
TGGTTTTAAGTATATGTTATTAAAGAGTTTTGTAAGATAAGGAGAAACCA
CGGCGACTTGTTGTATCGTCAGATTTGAAGGTGATCCATATAGCGTTGTA
TTGGAGTGTCATTCTCTTTGGTAATGTATCACCACATAGCCTAGCTACCT
CGGCTCCATACTGTGTACCACCAGCTCGGATCTGAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004666XLOC_004666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008309-exon-sc0000084-1575043694:195207..195241TCONS_00008309-exon-sc0000084-1575043694:195207..195241Clytia hemisphaericaexon
TCONS_00008309-exon-sc0000084-1575043694:194704..194940TCONS_00008309-exon-sc0000084-1575043694:194704..194940Clytia hemisphaericaexon
TCONS_00008309-exon-sc0000084-1510915933:195207..195241TCONS_00008309-exon-sc0000084-1510915933:195207..195241Clytia hemisphaericaexon
TCONS_00008309-exon-sc0000084-1510915933:194704..194940TCONS_00008309-exon-sc0000084-1510915933:194704..194940Clytia hemisphaericaexon
TCONS_00008309-exon-sc0000084-1491911889:195207..195241TCONS_00008309-exon-sc0000084-1491911889:195207..195241Clytia hemisphaericaexon
TCONS_00008309-exon-sc0000084-1491911889:194704..194940TCONS_00008309-exon-sc0000084-1491911889:194704..194940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:194704..195241 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07463	3.17688	0.623831	0.610321	1.48601	0.587134	3.97664	9.40757	0.176345	3.1157	9.27322	4.84972	9.45893	11.1604	3.78868	3.87353	9.4782	12.3016	16.7545	16.3388	21.0428	11.5105	6.17327	13.1652	9.95381	13.8869	14.3221	16.2656	5.09508	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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