|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008311 ID=TCONS_00008311|Name=TCONS_00008311|organism=Clytia hemisphaerica|type=transcript|length=4454bp
gattgattcggcgttgattcgttcgattgacaccgtctggagtagagctg
cgagcgacactgcgtagtttttttgttttaaattttgctgctttgattgg
tcagtcatttgattgcTATGAAAGTTTCCCTACACTGATGCTttaagtta
cccgacttcacggtatataccgtcaactgctctaacttggtgactatctg
acaaaacatgggacggcaattcagccaccatttcaccgaacctccaaagt
catttgatttgagttaatgaacagcgtattaaaaaacacacgatttctct
ttcgcaccaagtaggcttttaaatcaaaatatgaaaaaaaatccgtagtg
aaTATCACACGCGAGTGTCTGTGCATTCtgaacgaagaagtatgattgat
NTGTAGTGAATaacacacgcgagtgtctgtGCATTCtgaacgaagaagta
tgattgatatacttggtggagttatcaaaacaaatttgttgtcaaagagt
tctaatagtaagtgaaaatacagaccagattacaaccagtcccatgtttc
gaccaattttcccaagttagagcagtgtTGACGGTATAGTCTTTATGGTT
GAACCAGTGAGGGTTATAAAATATGATTTTAAAAAGAccttttttgattt
ataaaaggATATGGTGCGATGCTGTCTGTGTCATGTTTATAGATATAGTC
AGATAGTAGTTTCGTAtaaagttggtctaatgtcgtcACCCCTCTTccaa
ttttgacacccttctttagaggcATAATACTGAAATAGctaggaaggtca
gaatcactgatagacaaaagatttattACTCTATAatcactaagcaaaga
aaaatagtttcaatcagtgatttcgaccttccCATTGTTCCTATTTACAT
TCTTTTGCTTGCGAGTGAAGAAAACAATgaagcgctttcgcagcattaat
cttttaTACGCATTTCGacaggacgctagtgtgactaactgaaagGTATA
TAAGGTAATTTATGTGTATTGGCCAATAAGACTTGGAAGGGAGACCAAAT
AGGTACAGCCGTTTTAGGTATGCctttttagaataaaaatttttaacaag
tattCATGCATTTCTAGTGAAATCAGTTAATACAGGGCCAGAAACATTCA
TAGAGCCtcattttatctttttcaaGACAGCAATTTTTCCAGCTTATGAA
CTTTTCCAGCTTATGAACTTTTAGCCCTTACATTGTTTTAAAACCAGGAA
ATCACtcaataattttgaaacatttaaaGACGTTTTCGATCCTTGTTTGA
ATAGGTGGCTTCTTCACAAGGTGCTGACTTCTTTGTACTGGTGAAAGTAG
TTTTCTTGTTTTGCAATCTGTATGGATAAAAATCATTGGTTAGGGACAGA
ATCATTtagggggccgtccacatagtatataggcactaaaatgtcgaaaa
ttggataccccctccccctgtacgcaagcgtatgCAAATGGCTATTCCCC
CCGGTAAGTACGTATTTTTCATCCACAacccccctcggttgaagaaaatt
tcgaattcgaatcgtttggttcggacctttatttcagacctttatttcat
aaatgaaactcaatgtttattatgaaactttttcattccttgatgcgtat
aagaagctTAAAAATCGacagaaaaacaagcaaaaaagggctgtgaaaag
attttctctgcatacgtacattttcctttgactcCTCCCCTCCCACCGTA
CGCATGCATACTCTTTTGAGGagactccccctcccccttagtgcgtatgt
actatgtggacggcccctaggGTCAATGGGTTGGAGCTTGAGAGTCAAAA
TAAGGCTGGGAATAGCATTGGTAGGGACTAAAAGGCCCAGGTAGGAGTAC
CACTAGGGTTGTGGCTAACTCTGGTATGTTAATATTAGGTCTGTAGAATA
CACAATAAGTAGATTGTGAATTTGAGTTCTTGCAGTGGCTTCCTGGTCTA
GTGGTAGTGTACGGAGCTTCTAAACCAAGTGTACTCTTCATGTGTTGGAT
TTCGAAATATCAAAGTCCAACTTAGAAATAcccaaaaagttcaaaaactc
CAGTAAACTCCAAATCAAATATAGAAAAATGCAAGATCTACTCTCACCCG
GAAAAAGCCACAACCTCTTCACAATGGCCAAAGACAGTAGGACAAACAGT
CGTATTTTTATGTCATTGTTACCAAGATTTAGCTCATGGAAGTTGCCATT
CATATTTACAAACTTTGAAAGCCTCATAACTTGCTATCGATTTCAATTGA
AGTTAACAGTAAATTTCTTTAATCTTTTACTGTTGTCTTTTGTTCAATAC
agcattttttttagaaaaaatcaagctcAAAATGGAACGTTGAGCTTGAC
TGAAAGACACATCCGACCTTGTTTCCTACTTTCCAGTCTCTAGTTTGTAg
gttttctgatttattttgactttgtgagttattttctatgtttttgaacA
GTTTGAATGATTTCTTGAAAGGTCGCCACCGATtggattcgaacccacca
aatagAAAGTCAGATGATCAGAAACCCAATGCTCTAACCACTGTGCCTAA
GATTCATCCCGAATGAGAGTTCCTGACGGCTATTTgtattgtacaaacta
cagacaAGACCTCATTAAGAAAAAATCACTAAAGAAAGCTTGTTTCGAGT
TCCAACCATGACCCTAACTGAAAATAACCCAAGTATTACTGGATACACAA
CCACACCCAAACACAACCCTACTAGGTGTAACCCTACATTCTTCGAATCA
TTcattttcgtctttttttgaataagtcaattttaaaaataacaatttta
atctttgtaaaatatgtCTGATCCTCTTCCGCCATCTTACGAAATGGTTT
CTGGCAAAGACCAGCAACAGCAGCAACCGCCACAACAAATGCAGCAACAA
CCAGTAGCGCCACCACAAGCTGTTGCATATCAACCACAGCCACAAATAGG
TTATGCACAACCTGGTATGCCAATACAGCAGCAACCAATGATGGGCGGCT
GGAATACGCAAATGAGCGGGCAACAACAGAATTTAATGTTACGCCATCAA
GGAATGATGATGAGAATGCTTCCCATGAAACTTGGTAAAGTGCCGGTCAC
GATGGCATGCCCTAATTGTGGTTCCCAAGTTTTAACAGAAACACGTCTGA
CCACTGGTTCCTGTGCTTGGATAATAGCAATACTCCTCTGCAGTTTTTTa
ttattttttgtggCATGGATACCGTTAGTGATGGACAGTTGCAAAGATAC
AGTTCATAGTTGCCCAGAATGTAGAGGATATGTTGGTTTTGACCGTGACT
GCACTCCtggattttaacaaaataatattCAGTTACTGTACAGGAAAGAA
CAAAAACCTGTCTGGATTCAATTCTTGTGCGGACTGGTTATCATTCACAA
ACTATCACTTTCTGGATTAATGCTAACCAAATGAAAAGTATCTAATGATT
GGAAAAATACACCCTTTTTTACAAACAGCTTGCTTCTCATCAATAGCAAG
TGTTGAAGGAACGTTAAAGGCCCTTGATTAGCTAAATTATGTTTTAACAA
GAGgatgatgatgaaaaaaatataataaagtttttatcctaTCCTGGTGC
AGGATTTTCGGTAAATTATTGATAATAAATTATGATTGTTATTATGAGAC
TATTTGTATAAGTTTGTATATCTTTCCTTTTTGTAAATAATAGTCTTATT
AGCTCACATACAGTAAACATTATTCTGTCGAGTTGTGTGTATTTGGAATA
TTGTTATTCCTTAAAGcatctttctattttttttttcatttgcctCGATG
ACCGCATTAAAATGTGAATGTTATTAAAAAGGAGATTCTAAtagattgaa
attctttaaatacCAATGATTTAgataaaaatttcaacaaagCTTTAAAT
CTcactttttctcgaaattttgaTATACTTTGCCATTTGAGtcattaaaa
attgtttatttgTTAATATGTTATTTACGCCTTATGTTTTCCATTTTGCT
GACAAATATCAacttttgtaaataaaattataattatatcaaattttaat
ttccttattgtaataataataattcctGAATCCTTTTTTGAGTTTAGAAC
TCATCataaaaagatctttttctaGTTTTGAGGGGTTTAAGTTCTTTAGA
GGCTTTACCCTCATTCCCAGGGTATTATAGGTCTTTTGATGCTTTCTGAT
GGCACCAGATAATGTCCTGGCGTTGACTGATTTTACATAATTTATTAAAA
ACGCAAAAGATTTTCATCTGCTCTTTGATTTTGAAAGCATTTAGGTTATc
acaaaagaaaataatgaatgAGATTTTTCACGACAAGAACTTTTGCAATC
ATATGATTTTTTTGGCTCGAGAAGaccttattttttatttattattttaa
ctTG Run BLAST on NCBI protein sequence of TCONS_00008311-protein >TCONS_00008311-protein ID=TCONS_00008311-protein|Name=TCONS_00008311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MSDPLPPSYEMVSGKDQQQQQPPQQMQQQPVAPPQAVAYQPQPQIGYAQP
GMPIQQQPMMGGWNTQMSGQQQNLMLRHQGMMMRMLPMKLGKVPVTMACP
NCGSQVLTETRLTTGSCAWIIAILLCSFLLFFVAWIPLVMDSCKDTVHSC
PECRGYVGFDRDCTPGF Run BLAST on NCBI transcript from alignment at sc0000084:215226..219975- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008311 ID=TCONS_00008311|Name=TCONS_00008311|organism=Clytia hemisphaerica|type=transcript|length=4750bp|location=Sequence derived from alignment at sc0000084:215226..219975- (Clytia hemisphaerica)
GATTGATTCGGCGTTGATTCGTTCGATTGACACCGTCTGGAGTAGAGCTG
CGAGCGACACTGCGTAGTTTTTTTGTTTTAAATTTTGCTGCTTTGATTGG
TCAGTCATTTGATTGCTATGAAAGTTTCCCTACACTGATGCTTTAAGTTA
CCCGACTTCACGGTATATACCGTCAACTGCTCTAACTTGGTGACTATCTG
ACAAAACATGGGACGGCAATTCAGCCACCATTTCACCGAACCTCCAAAGT
CATTTGATTTGAGTTAATGAACAGCGTATTAAAAAACACACGATTTCTCT
TTCGCACCAAGTAGGCTTTTAAATCAAAATATGAAAAAAAATCCGTAGTG
AATATCACACGCGAGTGTCTGTGCATTCTGAACGAAGAAGTATGATTGAT
NTGTAGTGAATAACACACGCGAGTGTCTGTGCATTCTGAACGAAGAAGTA
TGATTGATATACTTGGTGGAGTTATCAAAACAAATTTGTTGTCAAAGAGT
TCTAATAGTAAGTGAAAATACAGACCAGATTACAACCAGTCCCATGTTTC
GACCAATTTTCCCAAGTTAGAGCAGTGTTGACGGTATAGTCTTTATGGTT
GAACCAGTGAGGGTTATAAAATATGATTTTAAAAAGACCTTTTTTGATTT
ATAAAAGGATATGGTGCGATGCTGTCTGTGTCATGTTTATAGATATAGTC
AGATAGTAGTTTCGTATAAAGTTGGTCTAATGTCGTCACCCCTCTTCCAA
TTTTGACACCCTTCTTTAGAGGCATAATACTGAAATAGCTAGGAAGGTCA
GAATCACTGATAGACAAAAGATTTATTACTCTATAATCACTAAGCAAAGA
AAAATAGTTTCAATCAGTGATTTCGACCTTCCCATTGTTCCTATTTACAT
TCTTTTGCTTGCGAGTGAAGAAAACAATGAAGCGCTTTCGCAGCATTAAT
CTTTTATACGCATTTCGACAGGACGCTAGTGTGACTAACTGAAAGGTATA
TAAGGTAATTTATGTGTATTGGCCAATAAGACTTGGAAGGGAGACCAAAT
AGGTACAGCCGTTTTAGGTATGCCTTTTTAGAATAAAAATTTTTAACAAG
TATTCATGCATTTCTAGTGAAATCAGTTAATACAGGGCCAGAAACATTCA
TAGAGCCTCATTTTATCTTTTTCAAGACAGCAATTTTTCCAGCTTATGAA
CTTTTCCAGCTTATGAACTTTTAGCCCTTACATTGTTTTAAAACCAGGAA
ATCACTCAATAATTTTGAAACATTTAAAGACGTTTTCGATCCTTGTTTGA
ATAGGTGGCTTCTTCACAAGGTGCTGACTTCTTTGTACTGGTGAAAGTAG
TTTTCTTGTTTTGCAATCTGTATGGATAAAAATCATTGGTTAGGGACAGA
ATCATTTAGGGGGCCGTCCACATAGTATATAGGCACTAAAATGTCGAAAA
TTGGATACCCCCTCCCCCTGTACGCAAGCGTATGCAAATGGCTATTCCCC
CCGGTAAGTACGTATTTTTCATCCACAACCCCCCTCGGTTGAAGAAAATT
TCGAATTCGAATCGTTTGGTTCGGACCTTTATTTCAGACCTTTATTTCAT
AAATGAAACTCAATGTTTATTATGAAACTTTTTCATTCCTTGATGCGTAT
AAGAAGCTTAAAAATCGACAGAAAAACAAGCAAAAAAGGGCTGTGAAAAG
ATTTTCTCTGCATACGTACATTTTCCTTTGACTCCTCCCCTCCCACCGTA
CGCATGCATACTCTTTTGAGGAGACTCCCCCTCCCCCTTAGTGCGTATGT
ACTATGTGGACGGCCCCTAGGGTCAATGGGTTGGAGCTTGAGAGTCAAAA
TAAGGCTGGGAATAGCATTGGTAGGGACTAAAAGGCCCAGGTAGGAGTAC
CACTAGGGTTGTGGCTAACTCTGGTATGTTAATATTAGGTCTGTAGAATA
CACAATAAGTAGATTGTGAATTTGAGTTCTTGCAGTGGCTTCCTGGTCTA
GTGGTAGTGTACGGAGCTTCTAAACCAAGTGTACTCTTCATGTGTTGGAT
TTCGAAATATCAAAGTCCAACTTAGAAATACCCAAAAAGTTCAAAAACTC
CAGTAAACTCCAAATCAAATATAGAAAAATGCAAGATCTACTCTCACCCG
GAAAAAGCCACAACCTCTTCACAATGGCCAAAGACAGTAGGACAAACAGT
CGTATTTTTATGTCATTGTTACCAAGATTTAGCTCATGGAAGTTGCCATT
CATATTTACAAACTTTGAAAGCCTCATAACTTGCTATCGATTTCAATTGA
AGTTAACAGTAAATTTCTTTAATCTTTTACTGTTGTCTTTTGTTCAATAC
AGCATTTTTTTTAGAAAAAATCAAGCTCAAAATGGAACGTTGAGCTTGAC
TGAAAGACACATCCGACCTTGTTTCCTACTTTCCAGTCTCTAGTTTGTAG
GTTTTCTGATTTATTTTGACTTTGTGAGTTATTTTCTATGTTTTTGAACA
GTTTGAATGATTTCTTGAAAGGTCGCCACCGATTGGATTCGAACCCACCA
AATAGAAAGTCAGATGATCAGAAACCCAATGCTCTAACCACTGTGCCTAA
GATTCATCCCGAATGAGAGTTCCTGACGGCTATTTGTATTGTACAAACTA
CAGACAAGACCTCATTAAGAAAAAATCACTAAAGAAAGCTTGTTTCGAGT
TCCAACCATGACCCTAACTGAAAATAACCCAAGTATTACTGGATACACAA
CCACACCCAAACACAACCCTACTAGGTGTAACCCTACATTCTTCGAATCA
TTCATTTTCGTCTTTTTTTGAATAAGTCAATTTTAAAAATAACAATTTTA
ATCTTTGTAAAATATGTCTGATCCTCTTCCGCCATCTTACGAAATGGTTT
CTGGCAAAGACCAGCAACAGCAGCAACCGCCACAACAAATGCAGCAACAA
CCAGTAGCGCCACCACAAGCTGTTGCATATCAACCACAGCCACAAATAGG
TTATGCACAACCTGGTATGCCAATACAGCAGCAACCAATGATGGGCGGCT
GGAATACGCAAATGAGCGGGCAACAACAGAATTTAATGTTACGCCATCAA
GGAATGATGATGAGAATGCTTCCCATGAAACTTGGTAAAGTGCCGGTCAC
GATGGCATGCCCTAATTGTGGTTCCCAAGTTTTAACAGAAACACGTCTGA
CCACTGGTTCCTGTGCTTGGATAATAGCAATACTCCTCTGCAGTTTTTTG
TAAGTTTATTTTAACAATAAGCTCACATAATGATGATGGCTTAAAGAATT
ATTTTTGATGATTGAGTGTTTTCATTTTTTATGGGTTTCAATTATCCTTT
TCTTACACTTTTTGCTTATTCAAAGGGAATCTCGTGCTTGAGATCTATAA
ATGATGTCATACCATTGCTTTTAGCTCAAGATTGATAAAATCATTAAAAT
TCTCTGCAATTGAGAAGAGCTGTACTGCTAAAACTCCTGGCAAGTATCTT
TTGGATAATAAAAGGTCCTTTGATTATTTTTTTGTGTTCCAACAGATTAT
TTTTTGTGGCATGGATACCGTTAGTGATGGACAGTTGCAAAGATACAGTT
CATAGTTGCCCAGAATGTAGAGGATATGTTGGTTTTGACCGTGACTGCAC
TCCTGGATTTTAACAAAATAATATTCAGTTACTGTACAGGAAAGAACAAA
AACCTGTCTGGATTCAATTCTTGTGCGGACTGGTTATCATTCACAAACTA
TCACTTTCTGGATTAATGCTAACCAAATGAAAAGTATCTAATGATTGGAA
AAATACACCCTTTTTTACAAACAGCTTGCTTCTCATCAATAGCAAGTGTT
GAAGGAACGTTAAAGGCCCTTGATTAGCTAAATTATGTTTTAACAAGAGG
ATGATGATGAAAAAAATATAATAAAGTTTTTATCCTATCCTGGTGCAGGA
TTTTCGGTAAATTATTGATAATAAATTATGATTGTTATTATGAGACTATT
TGTATAAGTTTGTATATCTTTCCTTTTTGTAAATAATAGTCTTATTAGCT
CACATACAGTAAACATTATTCTGTCGAGTTGTGTGTATTTGGAATATTGT
TATTCCTTAAAGCATCTTTCTATTTTTTTTTTCATTTGCCTCGATGACCG
CATTAAAATGTGAATGTTATTAAAAAGGAGATTCTAATAGATTGAAATTC
TTTAAATACCAATGATTTAGATAAAAATTTCAACAAAGCTTTAAATCTCA
CTTTTTCTCGAAATTTTGATATACTTTGCCATTTGAGTCATTAAAAATTG
TTTATTTGTTAATATGTTATTTACGCCTTATGTTTTCCATTTTGCTGACA
AATATCAACTTTTGTAAATAAAATTATAATTATATCAAATTTTAATTTCC
TTATTGTAATAATAATAATTCCTGAATCCTTTTTTGAGTTTAGAACTCAT
CATAAAAAGATCTTTTTCTAGTTTTGAGGGGTTTAAGTTCTTTAGAGGCT
TTACCCTCATTCCCAGGGTATTATAGGTCTTTTGATGCTTTCTGATGGCA
CCAGATAATGTCCTGGCGTTGACTGATTTTACATAATTTATTAAAAACGC
AAAAGATTTTCATCTGCTCTTTGATTTTGAAAGCATTTAGGTTATCACAA
AAGAAAATAATGAATGAGATTTTTCACGACAAGAACTTTTGCAATCATAT
GATTTTTTTGGCTCGAGAAGACCTTATTTTTTATTTATTATTTTAACTTG
Coding sequence (CDS) from alignment at sc0000084:215226..219975- >TCONS_00008311 ID=TCONS_00008311|Name=TCONS_00008311|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at sc0000084:215226..219975- (Clytia hemisphaerica)
ATGTCTGATCCTCTTCCGCCATCTTACGAAATGGTTTCTGGCAAAGACCA
GCAACAGCAGCAACCGCCACAACAAATGCAGCAACAACCAGTAGCGCCAC
CACAAGCTGTTGCATATCAACCACAGCCACAAATAGGTTATGCACAACCT
GGTATGCCAATACAGCAGCAACCAATGATGGGCGGCTGGAATACGCAAAT
GAGCGGGCAACAACAGAATTTAATGTTACGCCATCAAGGAATGATGATGA
GAATGCTTCCCATGAAACTTGGTAAAGTGCCGGTCACGATGGCATGCCCT
AATTGTGGTTCCCAAGTTTTAACAGAAACACGTCTGACCACTGGTTCCTG
TGCTTGGATAATAGCAATACTCCTCTGCAGTTTTTTATTATTTTTTGTGG
CATGGATACCGTTAGTGATGGACAGTTGCAAAGATACAGTTCATAGTTGC
CCAGAATGTAGAGGATATGTTGGTTTTGACCGTGACTGCACTCCTGGATT
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008311-exon-sc0000084-1575043694:216727..219975 | TCONS_00008311-exon-sc0000084-1575043694:216727..219975 | Clytia hemisphaerica | exon |
| TCONS_00008311-exon-sc0000084-1575043694:215226..216430 | TCONS_00008311-exon-sc0000084-1575043694:215226..216430 | Clytia hemisphaerica | exon |
| TCONS_00008311-exon-sc0000084-1510915933:216727..219975 | TCONS_00008311-exon-sc0000084-1510915933:216727..219975 | Clytia hemisphaerica | exon |
| TCONS_00008311-exon-sc0000084-1510915933:215226..216430 | TCONS_00008311-exon-sc0000084-1510915933:215226..216430 | Clytia hemisphaerica | exon |
| TCONS_00008311-exon-sc0000084-1491911889:216727..219975 | TCONS_00008311-exon-sc0000084-1491911889:216727..219975 | Clytia hemisphaerica | exon |
| TCONS_00008311-exon-sc0000084-1491911889:215226..216430 | TCONS_00008311-exon-sc0000084-1491911889:215226..216430 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:215226..219975 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006629 | LITAF |
Blast
The following BLAST results are available for this feature:
|
