TCONS_00008312 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008312
Unique Name	TCONS_00008312
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1113

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000084:230350..236915-

transcript sequence

>TCONS_00008312 ID=TCONS_00008312|Name=TCONS_00008312|organism=Clytia hemisphaerica|type=transcript|length=1113bp
TGGGAATAACTTTTTTGCAAACAACTTTCTGGAAACAAACTACAACCCTA
AGCAAGGCTACTGTGGAGATGATTTCGGGAATCGACGAATATCATTTTTC
GACGGTTCAGAGGAGCAGCAACTAGCATCATGTTTGGAGCATTTGATTCT
TCGGCTGTTGTTTTGCTGCTATTCAAGATAATCTACCAATCAGGATTTTC
GTTGAAATTAATCACATTTTGTTATTGCATTATTGTATTCATAATATCTA
ATTTGATGACCATTGTTTTGATTCCACCACAACACGTCCTCAGGAAATGG
ACTCAAGAAGAAATGGAATCATTATCTGAAAAATCACGCATCTCAGAAAC
ATCACTagaacattcaaaaaatgaaaagactCCTCTAGTTCCTGCTgaaa
agatgaagaagaaagATTCATTGAGAAGTCATATCTGTTCACCATTTTAC
ATTCTTCACGTATTTTATCTGAGTGTCTTTCAATTGAAGTTATGGTACTA
CGTTGGAACTCTGCCCGATGATTTGACACAACTATCAAATTATGATAACG
AGAAAGTGAGCGACTATATCGATATCTTCGGATATTGCCAGTTTGGTGGC
TTGCTGGTCAGTCCAGTTTTGGCCTTCATACTTGATAAAGATAAATTACT
TGGCAAATCTTCTAAAACACAGGGGCCTGTATCACAATTTGAAAGAACAA
GAAATTGTGTTCCGGTATTTGCCGTAACCACAATTTTGTGTATTATCTTT
TGCATAGCGAATAGTCTACCAGTCCTCAAGATACAAgttctGTCTTTTCT
TGTTTACATGATTGTTCGAGCTTTTCTGTATGGTAGTCATGGAGTGTTCA
TTGGGGCAGCATTCCCAGCAAAAGATTATGGAACTTTGTTTGGCATCGGG
ATGCTTGTAGCTGCTGCAACTGGTGCATTACAATATCCTCTTTTTGAAAT
CAGATCGAGGCTAATGGGGAACCAACCGTTGGGGGTCCAACTGATCATTT
TTGGTTTAGTCATATGCGCATGCGTGCACCCTATACACGTTTATTGGCGA
ACACGTGACACTGAAAAGAACAGACAACGATTCGAGACATCATGAAAGTA
TATTCAAAAGATG

Run BLAST on NCBI

transcript from alignment at sc0000084:230350..236915-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008312 ID=TCONS_00008312|Name=TCONS_00008312|organism=Clytia hemisphaerica|type=transcript|length=6566bp|location=Sequence derived from alignment at sc0000084:230350..236915- (Clytia hemisphaerica)
TGGGAATAACTTTTTTGCAAACAACTTTCTGGAAACAAACTACAACCCTA
AGCAAGGCTACTGTGGAGATGATTTCGGGAAGTAAACTTCCAAACTCTAC
TACTATCAATTCGCTACAATAGTCAATTCTATTCTTATTATGTTTAATTC
TCCATAGTAATCACCGTCAACAACAGACAGCAAAAATTGCTTAAAAGTTA
AATCTTTATTTTCTCACCGCATGAAAATTTTAAAATTCAAACATCGAAAC
TCGCCATTACATTTAAATTCGTACTCCCACGTTAGAATATAGCGACCGTA
GCATGAAGGTAGAGCATCCAGCTACGGTGCGCAAGGTTGTGGGTTCGATC
CACTGCCGGGTCATACGAAAGATTCCCAAAATGGTACTTGATGCCTCTCT
GCTTGATGCTCAGCAACTAAAGAGACGGATCAAGACTAAGTGGAGAAATC
CAGGGAAAAGACTGGAGTCCTCCCCTACCTTCGGGTAGACATTATACGAA
AAGAGAGCCTTCGGGTCGCCCTCGACTGCGGTCGCAAACTTACTTACTTA
CTTACATAAGAATATAGTTTTACGGTCTTACTTTACCGAAAAAAACCATT
CCATTTCAATTTCAGTCGACGAATATCATTTTTCGACGGTTCAGAGGAGC
AGCAACTAGCATCATGTTTGGAGCATTTGATTCTTCGGCTGTTGTTTTGC
TGCTATTCAAGGTAAAAAAATCTCTAAGCATTCCAGGCAACCGACAATAC
TCATTTAGGAAATGACACTACCATTTTGGTTTGTCATTTCTCTGGATAAA
CAAAAAAATAAAAATGACTGGAGTAAACGTCAATCAAAATGGTAGCGCAA
TATCCTAAAGGACTATCTATGTGCAGGATATTAACCACCTCTCGTTCATT
CCCGGTGCAAAATACACTTTTCTAGACTCTTTAAAGAACTATATAGTGGT
TTCTTCATGTTTCGTTAAATTACGTAATTCACGCGTTCGAATCTGTTAAA
CACGATCCCTTACGCAAATCGAATGTTTGCTTCCATAACGGCAGAAATAC
TTATAATTTTACGAAAAATTAAACAACTTGAGACGAAAATCATAAATCAT
TGCTAATTTTATTTTTCGATCTCTGTAATAAACCAAAATTCATAAATTAC
TCTCTCTAATTTTTCTTCTCTCCAATGGAAAATTTTTGGTATTTTAAGAA
TTTTTACACCTCGAGCAAATTCACTTGAAAGAGAGAAACTCCTGCCAAAG
ATAACAGGCCGGTGGCAAGTGGCCGGTCTCCACTCGCGCGTGCAACTTTT
TTATGACGTAATCTTTTTTCCAAGCAAAAAGGATTGAAGCCAAAAAGTGA
GATCGCAGCGCACGCAAATGGAGACCGGGCTTAAAGGTCAATTTCTCATA
AGTGGAAATTTCATCAAAACCCTATTTCTCATTTATAGATAATCTACCAA
TCAGGATTTTCGTTGAAATTAATCACATTTTGTTATTGCATTATTGTATT
CATAATATCTAATTTGATGACCATTGTTTTGATTCCACCACAACACGTCC
TCAGGAAATGGACTCAAGAAGAAATGGAATCATTATCTGAAAAGTAAGGT
TTAGATTGTCTTGTACAACCCCTTCTCACAGACCCATTGAGACCCCNAGT
AAGGTTTAGATTGTCTTGTACAACCCCTTCTCACAGACCCATTTAGACCC
CTCCCAATGGAAAAATTGGCCAAAATACCGCCCCCCCCAATAGAAAATTA
GACTCTAATTTTTGTCCTTACTGGAAATAATCAGATAAGCAAATTCTCAA
TGCAAAATATTGTGCTATTTCTTTCCATCCCCACTAAATTTTCTAACTTG
AAAACAATTGAATTTAAATCTGCAGCTATGATAAACATGGGAATGTCAAT
CCCTTATCGAGTTGTGGTTTGTTATTTCTACCCCCACTGGCTGAAAAAAT
CCCACCGGGTCTGTGAGAAGGGATTGTTCTTGTATCGAAAGTTTGGTGCA
AGAGTTCCTACAGTCTGTTATTATCTTTTCGGCATAAGCTTTGAATTATT
CTTGTCTTATTCTTTAGTATTCTTTGTATTGAGAATTCTTGGGCCTTGCA
GATCACGCAGACGTTAAAGGCTGAGATTTGTTCTTAAAATGTTCTTATTT
AAGAGCATCAGTTTGTTCTTATAAATATAAATTCTGGTACATTTGCACCT
ATAGTAAGTTTGATGTGCTATTTTATTCTTTAGATCACGCATCTCAGAAA
CATCACTAGAACATTCAAAAAATGAAAAGACTCCTCTAGTTCCTGCTGAA
AAGATGAAGAAGAAAGGTACCATGCATTCTTTGATTGAAAATATTTAATT
AGAGAAATGAGGTTCAAAAAATCTGGTACCCAGAGCCACTTGTACTCCTT
TTTGATTTTACTGATGGTTGTGATACGCTATCAGAGTTATCAATTGATTT
TAATGATATCATTCGTGATTGCTATCATCAGAATTCTCAAAAAGCGAGCT
AATAGACTGGATACCAAATTGAAGTTCGAAAACTCTAAGAATGGAATTAA
TAAATTTATAGAAAATCAGCTTACACATCGTGGCTCAAAAAGGTCCTTGA
AATAAAAATGATATAAAAGATTTCTGCTAAAAGTAACTAAAAACACAAAA
AAGCTTTGTTGTTAATATTACAAACAAGACAGCTTAAGCGGCGTAAAGGC
CCAGCATTGTTGGCACTGTCAGCATATTTTTGCGCTGCAGAATCGGCGTA
CAACAGGAGCGAATTTTTTCAATGTATAGACTCGAGTTGGGCGAGCAATA
AAGATTTAATTACTTTAAACTTTTGGGTTTTTCGTACGGATGCACACAAT
AGAAAGTCAGGTAGTTCGATTTTAGCCTGGAATCGTCGATTGAAAATTGC
GTCCATAGGCCCCGACAAAGTCAAATTTTTTCGACCAGTTGTGTTTTAAA
GGCCCATTGCGCTGAGCACTGAGCCAAAAAGTGTTAATTAGCACCCTTTC
AGTGCCATCGGTCATGAGATTTCAAATTTGGAGAATGTGAAGTTCATTTG
AATTAATTGTTTTAATTAATTTTTTCAGCTAACTCTCTGAGTTTCCATTT
TAGATTCATTGAGAAGTCATATCTGTTCACCATTTTACATTCTTCACGTA
TTTTATCTGAGTGTCTTTCAATTGAAGTTATGGTACTACGTTGGAACTCT
GCCCGATGATTTGACACAACTATCAAATTATGATAACGAGAAAGGTAGGA
AGCTATAAAGCTACCTTACTTGTCTTTAACAATCCAAATATTCCCTTAAC
AATCAAAGGCGCTAAACACAAATATTCGGATAAGTGCTTCAGTACAGCCA
CTATTTGTCATCTTGGCGCGTTTGATTATTAAGCGAAGTTTTAGTTTGTT
ATAGGTAAGTATCCCAGCTGGCACACAACGTTGTTTCAACGTTCATCTAA
CGTTATACGGACGTTGTCAACGTTGAAACAACGTTGTGTGCCAGCCGGGA
TGGTATTATCAATGTTCTTCAATTTACCATATAATTTTGGGGTAAGATTC
CACTAACGGGGGTAAGATTCCTCTGCCACTAGTCTACCGAAAAACAAAAG
AACAACGCCGGTTAGCCGAAAAATAAGCTGAGAAATGTTAGACATTTTTT
CTTACTCAACACAAGACTTCCCGTAACTTTGGAAAGGACTTATGTCGGCA
TTTTGCAACCTCGTTCCCTGCGTATTATCAGCTTTTTTTGTTACTGATCT
AGAGCTAGATAATTCTCTGGCGTCAACAAGTAACGTAGANATTATCAGCT
TTTTTTTTACTGATCTAGAGCTAGATAATTCTCTGGCGTCAACAAGTAAC
GTAGATAAAGCCTGGGATACACAGGGACAAGGTTGGGCATTTCGTATAAA
ATACTACATTATGTTGAAAAATAAATCGATAATATTTCTTTCTTGTCATT
TCAGTGAGCGACTATATCGATATCTTCGGATATTGCCAGTTTGGTGGCTT
GCTGGTCAGTCCAGTTTTGGCCTTCATACTTGATAAAGATAAATTACTTG
GCAAATCTTCTAAAACACAGGGGCCTGTATCACAATTTGAAAGAACAAGA
AATTGTGTTCCGGTATTTGCCGTAACCACAATTTTGTGTATTATCTTTTG
CATAGCGAATAGTCTACCAGTCCTCAAGATACAAGTAAGTCTTCGGTTTC
CTTTTAAATCAATTATCGAGTAACGTTTTAAAGTCTGTGTCAAAATACTC
CTTTTCGATCGTAACCGCCAATTGTTGCGAGGAAATCTTTTTGTCCTTTT
TACCACCCTAAAACCGTCCCAGTCTTTTTTTCGCACCTATAGAAAATAGA
AAAAGATGTAAAACAAAAGGATTGGATCGAGTTTAGGGTGGTAAAACGAA
CAAAAGAATGCCCGCGTGGTAATTGGTGGCTACGGCCTAGAAGGTGTATA
TTATCAACAAAGAAAGGCATTGTCTATTTCGTAGTGTATATTGTTTTGAG
TATACATAATTTTCTCATTCTACCTCGTTACGGTTCTAAATTTTTTTATG
GTTGCACTCTATTGTGAATACACTCTTCTCGAGATGCATAAATTTATTGT
TGTCCTCGTTTTCAAACAGATTCCATTGCTATGAAATTATACATTTAAAC
CAATTTAAATTCCCGAAAGGAAAACATTAACTCTAAAACAAAAGTACTTG
AAATTCAAAATGTCTCGTGAGGTGTAAACAACACAATTATCATCGTGAAT
ATGTAATTTTATAGCAATGAAATCTGTTTGAAAACGAGGACAACAATAAA
TTTATGCATCTCGAGAAGAGTGAATTGTGATATAAGTTTTATAAAGATAG
CAACAATGGAAAAGGGTTCTTGAATCTCCAAGTTGATTGAATGATGACGA
AAAACTTTTTTTTTTCAGGTTCTGTCTTTTCTTGTTTACATGATTGTTCG
AGCTTTTCTGTATGGTAGTCATGGAGTGTTCATTGGGGCAGCGTAAGTGA
CTTCAAATAACAATAAAATTAGATTCATAAATTTACCATAGATCACCCCC
TTCTCACAGGCCCGGTGGGATTTTATCAGCCAGTGGGGGTAAAAATAACG
GACTAAAACTCGATAGGGATTGATATTCCTATGGTTTTTTTGAATTACAT
TGTTTTCTAGCCAGAAAATTCAGTGAGGATGGAAAAATAGCACAATATTT
TGCAATGAGGATTTGCTTATCGGATTATTTTCAGTGGGGACAAAAATTAG
AATATAACTTTCTACTGGGGACGGAGGGTTCCCAGTGAGTCTGTGAGAAG
GGGGTGTCATAGATAATTAGCTAATTAATCTAATGGACATGGGAATTACT
TTACTAACGACCCTCCCCTTTCCTTTTGATGGTCTGGCTAAAGAGCTCGA
TTTTTTCGGGAGCTCCGATTTTGTTGTGGGACATTGTTAAAGATAGCTTT
TTATGATGAAGAAAGGAAACCTCTCGGCAGAATTATCAAAAGAATTTCCC
AGAATTTGTGATGCCCAGGAAGAGAGTGTGAGAAAGTTGTTATTTTGCGT
TCTGTACGCAAATGGTGGGGTGTACGTTGAATTATGACCTTTCAGCAAAT
TAGAGGGTATTTAGAGGAGGCCCCCAGTGATTTGTGTGATTGCGTGATTT
GAAAGGTGACTGGGAGCCTCTTAGAGTAGTTGTTTTAAAAGGCTTTCTAT
TTATTTCAGATTCCCAGCAAAAGATTATGGAACTTTGTTTGGCATCGGGA
TGCTTGTAGCTGCTGCAACTGGTGCATTACAATATCCTCTTTTTGAAATC
AGATCGAGGCTAATGGGGAACCAACCGTTGGGGGTAGGTTTGATTTTTTG
GGTTGAGCTTAAAACCTTTTTTCTATGGTTATGTCTCTGTCTCATTGTAA
TGCAGGTATTCAAAGGTTTCTTTAGTCTGATAATTTGTGCTGTCTGGTAT
ATGTTATTTTATTTAAGAACATAAAAAGTATAAGAACATAAGGCTTTGAT
TTAAAAAAAATAAGAATATTCTGAAGATTATTTCAAGGCTTTGAAACATA
GGTAGAATTCGTTTAAACAATTTGACCAAAATAATTCCAAAATAATAAAT
ATAAGAACACTTCAAGAACATTTTTATGAACCCTGAAAAACACCTGAAGG
CTTCAAAGAATTTCTACATGCGATATCAACAAAAATGATGACTTTTTCCT
CCACGGGATGCTCAACGCATTTTGCTCTAATGCAATTTCGATATCTTCAA
TAACATTCCCAGCCATTCTATGAGGATATTTAAAAAATGGGGGCAGAACA
TCGGAGTTTTGTATTTTAGTACATAAAAATATTTTAGTGAGTCAAATTCC
CCATGGAAATGATCTCCAATCTCATTGGTTGAAAAGTACAATCGAAAAAT
TTGTTGAGTTATAAAACAATTTCTTTACAACTTTCAGGTCCAACTGATCA
TTTTTGGTTTAGTCATATGCGCATGCGTGCACCCTATACACGTTTATTGG
CGAACACGTGACACTGAAAAGAACAGACAACGATTCGAGACATCATGAAA
GTATATTCAAAAGATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004669	XLOC_004669	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000084	supercontig	sc0000084:230350..236915 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156825	0	0.13313	0.408579	0.834984	0.392057	8.51793e-09	0.949619	3.15758	1.60723	1.45388	1.64875	1.19804	1.26016	0.0436819	0	0.164209	0.645443	0	0	0.00738231	0.843701	1.04356	0	2.7615	2.08927	0.752097	1.86959	0	0.0176813

Blast

[Close]

BLAST of TCONS_00008312 vs. Swiss-Prot (Human)
Match: S43A3 (Solute carrier family 43 member 3 OS=Homo sapiens GN=SLC43A3 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.675e-38
Identity = 99/341 (29.03%), Postives = 177/341 (51.91%), Query Frame = 1

Query:   94 IFRRFRGAATSIMFGAFDSSAVVLLLFKIIYQSGFSLKLITFCYCIIVFIISNLMTIVLIPPQHVL--------------RKWTQEEMESLSEKSRISETSLEHSKNEKTPLVPAEKMKKKDSLRSHICSPFYILHVFYLSVFQLKLWYYVGTLPDDLTQLSNYDNEKVSDYIDIFGYCQFGGLLVSPVLAFIXXXXXXXXXXXXTQGPVSQFERTR-NCVPVFAVTTILCIIFCIANSLPVLKIQVLSFLVYMIVRAFLYGSHGVFIGAAFPAKDYGTLFGIGMLVAAATGALQYPLFEIRSRLMGNQPLGVQLIIFGLVICACVHPIHVYWRTRDTEKN 1071
            +F + R    ++  GAFDSS+ V L+ K++Y+ G SL+  +F +  +        T +L+P  H+                  T+EE E+   ++R  ++    S  E+TP   A + ++  S  S+  S  +  H+ +LSV QL  + ++GTL   LT ++  D  +VS Y + F + QFG +L +P    ++D+ K   +    +   S       + VP  A+T++LC+ F +  S+P+L +Q L+F++ +I R+FLYGS+  F+  AFP++ +G LFG+ M ++A    LQ+P+F +    + N P  V ++    ++    HP  VY   R  +++
Sbjct:  150 LFGQHRSTIITLYNGAFDSSSAVFLIIKLLYEKGISLR-ASFIFISVCSTWHVARTFLLMPRGHIPYPLPPNYSYGLCPGNGTTKEEKETAEHENRELQSKEFLSAKEETP--GAGQKQELRSFWSYAFSRRFAWHLVWLSVIQLWHYLFIGTLNSLLTNMAGGDMARVSTYTNAFAFTQFG-VLCAPWNGLLMDRLKQKYQKEARKTGSSTLAVALCSTVPSLALTSLLCLGFALCASVPILPLQYLTFILQVISRSFLYGSNAAFLTLAFPSEHFGKLFGLVMALSAVVSLLQFPIFTLIKGSLQNDPFYVNVMFMLAILLTFFHPFLVYRECRTWKES 486

The following BLAST results are available for this feature:

BLAST of TCONS_00008312 vs. Swiss-Prot (Human)

BLAST of TCONS_00008312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S43A3	2.675e-38	29.03	Solute carrier family 43 member 3 OS=Homo sapiens ...	[more]

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TCONS_00008312 (transcript) - C. hemisphaerica