TCONS_00008318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008318
Unique NameTCONS_00008318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008318 ID=TCONS_00008318|Name=TCONS_00008318|organism=Clytia hemisphaerica|type=transcript|length=1499bp
ttttatttgagtatttttgttggTAAGATGAAAGATAAAAGCTTTCTTGC
ACTTCCACGGGAGGAGACGCAATCACCTGGTAGTCATCGCTCGTCATCAA
GCTCAAGCGAAAGTCAAATCAAATACGAAAATGATCGATTGAAAAAAGCG
CTTGCTCAAAGCTCATCGAATGCAAAGAAGTGGGAAACTGAATTTCAAAC
ATTGAAAAACAATAACGCCCGCTTGACGGCCGCCCTACAAGAGAGCGCGG
TCAACGTGGAGAAATGGAAAGAACAACTGAATAATTATAAAGAAGACAAC
CAAAGACTCAGAAAAAAGCTGGCGGCCAGTGCTGGTTCTGGCGGTGCTAA
ATCAAATTCGACGGAAGTATCCGATTTAGAAAAACGGGTTTCGGAATtag
aaaataaactaaaacggAAAGAAGAGGAGTTATCTCGCATAACGCAGCAC
AGTACGGATGAATTACATGTGTTACGGGAAAAGAATGCGCAGTTATCTAA
AAAACTTAAAACACACGAAGATAAATTATCAGATGACGTAAACAACAATC
GCAAACAAAACGAAGAAATACGAAACTACGAAGGCAAATTGAAACAATTC
AGCGAAACAAGTCATGAAATGGAGTCGAAGTTACGAGAACTTTTTACGCT
ACAACAAAAAATGAATGGTTTGATGAAAAGTTGAAATTCTTTGTGAGTTT
CTCATTCACTCTCTTCTCTGTTTATGTTTCACTTCATGTTTCAGATGTGT
TCAGCTAGATAATTCATGATAaacatgacgtaatgttttctattaTTTTG
GTAGTAGTGGCATTTCCGCTACTTGCCAAAACCGGGGTGGTTCCGTAGAA
AGgattacgtaatgaatatcaTTCCATGAATAAGAGAGGACCTGTTTAGC
CCCAGTTTTTCTGttcaattttaatattttctcaaatttgtcGATTTCAG
GCAAATCTTTAGATTATAAAACTATGAGGGGACTAGAAACGAAGGACAGA
CAATCTTTCCAACACATAACAGTGTATAAATGAttcttctttttaaagaa
agttcAATTTATCCACTTTTTAAGTATGTAATGAAAATATATTATATAGT
ATTTTACCATAGTAGAGTTAGACCAAAAAAATAGTGTACCATAGTCTCAA
AAGAAATTGTATATAATTAAaatatgttatatcataaactCAAAGTGTGT
ATTATTGTTTTAGTGTTCTAGCTTTGCCGAGATCagataatttttgtttt
acatTTAAACTTAGCAAATTTTAACTTTGTCTGCTAATATCTACGTCATT
TTACTTGAACAAGTTTGCCCTACAATTTTCAAAGCTGTATGAAAACGaat
gtaatttttctttaatgcactctttgttgttttgtCTTCCGCTgagatga
aatttgaaatttctctaaaatctcagctggcacacaacgttgtttcaacg
ttcatctaatattcataacgtccatataacgttgaaTGAACGTTGAAAA
Run BLAST on NCBI

transcript from alignment at sc0000084:339162..344991-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008318 ID=TCONS_00008318|Name=TCONS_00008318|organism=Clytia hemisphaerica|type=transcript|length=5830bp|location=Sequence derived from alignment at sc0000084:339162..344991- (Clytia hemisphaerica)
TTTTATTTGAGTATTTTTGTTGGTAAGATGAAAGATAAAAGCTTTCTTGC
ACTTCCACGGGTAAGGTTCTTGAATTTCTCTCCATGCGTTTCATTTAGGG
TTCTCTGTCATTCTAAGTTTAGCTCTTTCCATTGCCAAGATTCGTAGAAG
GCGATTAGTGGAGAGAGAGTTGACCTCGCTACGTGTTCAATTTTCATTGG
ATTCTTACCCAAAACCTTCCGGTCAGTAGACAATCACAATAATCATTTGA
TCACGTTCTTAATGTCGGATTTGTATACATTGCTGGGGACAATTTCAATC
AATGTAGTTTTTTGGACCCAGTATAATTTTCCCGAAAACTTGTTCACTAA
ACTAAACTAAGCTTGGGAAAGGTTGAAGATGCAACTCTAGCCGTTTCGGG
CTTCAAACTCAATGTTTGTAATCGGTAACAAATAAAACAAAATTTCGACC
CTATGCAACCACTTTCCCAATTTCTACAGACTTTTGTTTGCATTCTGATT
GGATCTTTTCGAAGATGCTGTGTTGGTTGAAAAAACTGTGTAAAGAAGAT
CTCGGGTTGGTTTTGTATGTGTATTGAAGTGAAGGGTTGAAAGCGAATCT
AGATTTTCTACAAAACGGTCAACATTTTACCATCACCCGGCAACGTATTA
GCCAAATATTTGAATGTTGAGAGGTTAAAAAAACTTATGTTATTTGAGAG
TGTGTTTGTGATATCACCTCACCTAAGAAATGATCGCAATTTTGGTTATA
ATAAAGCACTGTTGTTTGCTTTCAAGATCTGAGGACAACATTTGTAGGGA
AAATGGTATATTTGTTAAACATTTTTCATGTCCTTTTTCTATGTTTGTTT
CAATTTCGTTTGAAGACACTGTAAGTTGCATAGCTAGAAGTGCAATGGAA
TGAAGGGAAGCGCAAACGATGTAGTATATATCCTGCACTGACACAGCTCC
ATTATTACCTTCTCTCTATGTACAGGTCGATTTGNGTAATTTCTCCTTTG
CATAGTTCGATCATTACTTTGGCTCTACGTACAGGTCGATTTCTAACCAT
TTTTTCGCTTTCATTATGTACAGGAGGAGACGCAATCACCTGGTAGTCAT
CGCTCGTCATCAAGCTCAAGCGAAAGTCAAATCAAATACGAAAATGATCG
ATTGAAAAAAGCGCTTGCTCAAAGGTAACATCTCTTCCCCTTCTTCATAA
TCGCCGAGCAGAATCTAATACTCTGCGCATGATACGCATTCACTCTAAAG
GCCATGGATCCGTAAGAGAAACTGCCTAGGTTGGCGAACCGCTTGAATCC
TTTTCATACAGTGTTGGGATGAATTTTTGGATTCTAAAAAGTAGGTGGTG
CTGAGCTGATGAGAGATTTCAGGTGGGGTAATCCTATGCAGGCGAGGATG
ACCTTTTTCAGGTGTGGGTTTAGAGGTCTTGTCTACTAATAATAGCTCTG
ATTTTCTGATTTCATAAGACTTCAGCCTGAAATTCAAGGGACCAGTAATC
AAAATCTTTGAATATAAATAAAGTAGTTAGTATACCTTAATGTGGAAAAT
TTGTGAGCCAAGAAGCGATTGAAAATATGCGGTGAAATAGAAGAATATCT
TTTGTTTTACAGCTCATCGAATGCAAAGAAGTGGGAAACTGAATTTCAAA
CATTGAAAAACAATAACGCCCGCTTGACGGCCGCCCTACAAGAGAGCGCG
GTCAACGTGGAGAAATGGAAAGAACAACTGAATAATTATAAAGAAGACAA
CCAAAGACTCAGAAAAAAGGTAAAGGACGATTGACTTGCCAATCGGTTGG
AGGATATTGTACTCAGCTTGGTCATTTCTATTTTATGTTAAGAAGTTTAG
ATAACAGTTTTAACTCAAAAGACACATCATTACATACTGTGTGCCCCTTG
TTTTGATGAGAGCCCCATCGCAAAGGAGGACTGAAGCAAAAATTTTACCT
GCTTTTATCTGTGGACTGAGAGATTTTGGACATGATGAATGGGAGAGCTC
GTAGTTTTAATATTTCGGGAGTTTTTAAGATACAAACTAAACCGAAAATG
AAGTTCTTTATGAATCTTGCTCTCCAATCCTCAAAAGCCAAGTCTTTTCT
ATTCAGTGTTAAATTTGACTTGATTTTTTGGACCTACCTCCGGGTACCCC
GGTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTTCGTCTGTTCGTTC
GTCCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTT
TTTTCTGATTTTTTGCACAATGATGCAAAACGGCAATGCCCAGAACGTGA
CGGAGCCCGATTTTTGAGAAAAAATTTATTTGGGCGAATTTGAGCCAAAA
ACTACCTAAAATTAGGGTTTTTTAGACTTTGTGCAAAATCCTGTCATTAC
TTTTTTCTGATTTTTTGTACAAAGATGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGATTTTC
GTATTTTTGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTTTCT
CAATGTTGACTCGTTATTTTTTTCTGATTTTTTGCACAACGACGCAAAAT
GGCAATGCCTAAAATGTGTCGGAGCCTGATTTTCGAAAAAAAATATATTT
GGGCAAATTTGGGCAAAAAACTGCCTAAAAATAAGGTTTTTTGGACTTTG
GTCAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTACAAAGATGGAGG
GCAAGATTCTCTAAAGAATGGCTGAAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCTTT
AACCAAATATGAAAATATAGCTTTTCTCAATGTTGACTCATAATTTTTTT
CTGATTTTTTGCACAATGATGCAAAATGGCAATTCCCAAAATGTGAAGGA
GGCAGATTTTTAAGGAAATTTTTTTTGGGCAAATTTGGGCCAAAAACAGC
TTAAAAGGTTTAAGTGATTTTCGTATTTGGGGAAATTCCTTTATACCATT
TTACATTATTCAACACACAAGCTTTATTTTTCTATTCTGAATTTTTGTAC
ATATATTGTCACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAG
GTCCATTCAGCATGTTGCTTGTTTTCATTTCAGCTGGCGGCCAGTGCTGG
TTCTGGCGGTGCTAAATCAAATTCGACGGAAGTATCCGATTTAGAAAAAC
GGGTTTCGGAATTAGAAAATAAACTAAAACGGAAAGAAGAGGTTTGTCTC
TTTTCCCTTTGATATTCCAGCAAGTTATTTGATTTTAGTTGTAAAGAGTT
CAACGATTTGCATTCGCATTGTACTTGTTTTTCCCCATAAGTATAACGTT
AAGCATATACAGGCTCAGTTTTTGGTACCTAAACAATGGCTGACCCTGAC
TCAAATAAAGATTTTTACCTCAAATTTAATTTCCCCTAAGCATTAACGTG
TATTTGCCACGCCTGAGTTTCGTAATTAATTCGTTTGTACTTTTTCACGC
GTAGCGTCAAAAATATTTATTTATTGCCATGCGTAGACACTTGCTTATTT
AAAAAAAACATGCTCTCTCAAGTTCTTTAACGGTTTAAAATCATTTTCAT
CTCAACCGGTGTGACCGAACTGACTGAGTGGCGTTGTGCCGAAATACTTG
ACAAAACGCCGTGACAAAAGCGGAAACCATCGTGGAGACAGTTTAGTGAG
TGTTTGCTCGTTGGAGGTGTCCGCCTTTCGGATGTTTTACTGTATTTATT
TTCTTCCAATTTTAGGAGTTATCTCGCATAACGCAGCACAGTACGGATGA
ATTACATGTGTTACGGGAAAAGAATGCGCAGTTATCTAAAAAACTTAAAG
TAAGTGTTTTTTTCTTACATGCTATCTGCGTTATATATCTGGGAATGAAA
ACGGTCAGTGGAAATCCGTAACATGATTGGTAGATTAAGTTAATTGGATT
TTTTTGGCGTGGGTTTAATTTGGCGATTGAACAAAATGAGATTTTAGGTG
GGAATCCAATTTGGCGAATGATCAATTTTCTAGAATTTGGTTGGTATTTC
ACTACTACCAAAATTAATCCAGGGTATATACCAATATGGTATATATAATA
TATAATTTCGAACACACTTATCAATAAAACCAAAGCAATTAAAAGTTAAG
AAGTTTGCAGAAGAAGATACATACGTTAGTCAAGATAACCTCATTTTTCA
ATGAGGCCATTATGGAAGCAAACATTCGATTCTGTAAAGACGATCGCTTA
CGCAAATCGAACGTTTACTTCCATAATGGTGGAAGTTATGAGTGATAGTT
AAATAATCTATAAGGCCTGGCCGTTTGACTGAAGTCCCAAGAAGATGATT
GAAAACAGTCTGAAAATCCTGGATTACTAGGCTCTCCATGTAAAATATCG
AATCTATCTGAATTTCAAGGAGATTTGTTTTCACCTTTCAGACACACGAA
GATAAATTATCAGATGACGTAAACAACAATCGCAAACAAAACGAAGAAAT
ACGAAACTACGAAGGCAAATTGAAACAATTCAGCGAAACAAGTCATGAAA
TGGAGTCGAAGTTACGAGAACTTTTTACGCTACAACAAAAAATGAATGGT
TTGATGAAAAGTTGAAATTCTTTGTGAGTTTCTCATTCACTCTCTTCTCT
GTTTATGTTTCACTTCATGTTTCAGATGTGTTCAGCTAGATAATTCATGA
TAAACATGACGTAATGTTTTCTATTATTTTGGTAGTAGTGGCATTTCCGC
TACTTGCCAAAACCGGGGTGGTTCCGTAGAAAGGATTACGTAATGAATAT
CATTCCATGAATAAGAGAGGACCTGTTTAGCCCCAGTTTTTCTGTTCAAT
TTTAATATTTTCTCAAATTTGTCGATTTCAGGCAAATCTTTAGATTATAA
AACTATGAGGGGACTAGAAACGAAGGACAGACAATCTTTCCAACACATAA
CAGTGTATAAATGATTCTTCTTTTTAAAGAAAGTTCAATTTATCCACTTT
TTAAGTATGTAATGAAAATATATTATATAGTATTTTACCATAGTAGAGTT
AGACCAAAAAAATAGTGTACCATAGTCTCAAAAGAAATTGTATATAATTA
AAATATGTTATATCATAAACTCAAAGTGTGTATTATTGTTTTAGTGTTCT
AGCTTTGCCGAGATCAGATAATTTTTGTTTTACATTTAAACTTAGCAAAT
TTTAACTTTGTCTGCTAATATCTACGTCATTTTACTTGAACAAGTTTGCC
CTACAATTTTCAAAGCTGTATGAAAACGAATGTAATTTTTCTTTAATGCA
CTCTTTGTTGTTTTGTCTTCCGCTGAGATGAAATTTGAAATTTCTCTAAA
ATCTCAGCTGGCACACAACGTTGTTTCAACGTTCATCTAATATTCATAAC
GTCCATATAACGTTGAATGAACGTTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004671XLOC_004671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008318-exon-sc0000084-1575043694:344932..344991TCONS_00008318-exon-sc0000084-1575043694:344932..344991Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1575043694:343818..343918TCONS_00008318-exon-sc0000084-1575043694:343818..343918Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1575043694:343223..343379TCONS_00008318-exon-sc0000084-1575043694:343223..343379Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1575043694:341351..341458TCONS_00008318-exon-sc0000084-1575043694:341351..341458Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1575043694:340743..340826TCONS_00008318-exon-sc0000084-1575043694:340743..340826Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1575043694:339162..340150TCONS_00008318-exon-sc0000084-1575043694:339162..340150Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1510915933:344932..344991TCONS_00008318-exon-sc0000084-1510915933:344932..344991Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1510915933:343818..343918TCONS_00008318-exon-sc0000084-1510915933:343818..343918Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1510915933:343223..343379TCONS_00008318-exon-sc0000084-1510915933:343223..343379Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1510915933:341351..341458TCONS_00008318-exon-sc0000084-1510915933:341351..341458Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1510915933:340743..340826TCONS_00008318-exon-sc0000084-1510915933:340743..340826Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1510915933:339162..340150TCONS_00008318-exon-sc0000084-1510915933:339162..340150Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1491911889:344932..344991TCONS_00008318-exon-sc0000084-1491911889:344932..344991Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1491911889:343818..343918TCONS_00008318-exon-sc0000084-1491911889:343818..343918Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1491911889:343223..343379TCONS_00008318-exon-sc0000084-1491911889:343223..343379Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1491911889:341351..341458TCONS_00008318-exon-sc0000084-1491911889:341351..341458Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1491911889:340743..340826TCONS_00008318-exon-sc0000084-1491911889:340743..340826Clytia hemisphaericaexon
TCONS_00008318-exon-sc0000084-1491911889:339162..340150TCONS_00008318-exon-sc0000084-1491911889:339162..340150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:339162..344991 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.00011631	0	0	0.0796158	1.18184	19.3405	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.72273e-09	0	0
Blast
[Close]
BLAST of TCONS_00008318 vs. Swiss-Prot (Human)
Match: HOME2 (Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.390e-17
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:  118 IKYENDRLKKALAQSSSNAKKWETEFQTLKNNNARLTAALQESAVNVEKWKEQLNNYKEDNQRLR 312
            +K END+LK AL QS++N KKWE E QTL+ +NARLT ALQESA +VE+WK Q +  +++N RLR
Sbjct:  162 LKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLR 226
The following BLAST results are available for this feature:
BLAST of TCONS_00008318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HOME24.390e-1760.00Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 ... [more]
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