TCONS_00008365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008365
Unique NameTCONS_00008365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008365 ID=TCONS_00008365|Name=TCONS_00008365|organism=Clytia hemisphaerica|type=transcript|length=861bp
aaactgaggctgggcatgttcttacgatgttcttaatttttcgaagaatt
tcagcctcaatgttcttataaactgggttctaataaaagaaaaaacgtgt
attttgagtgcttccgtataaaacattaagtcatgaatgtaaaattttat
ttcGCAATTTTTTATACTCGGGAAATTTATTCAATCAAAGTATttgtaga
taaaaaatgaaaagtgaaaatatgaaatttttttgatcgaTCTCCCTAGC
TGGCACAAAACCGTCCATCTAACGTCTATCGGACGTCCATTTCATAAAGA
ACTTGAAAAACAACATCGTATGTCACGTGTCACCTAGGTCAAAGGTTTAT
TTTCAGTggaatacaaatttgaatttaaGGCTCTTTAAAACCTGCCTATA
TGTCGGCTCCAAATCcaaatcaagattttcaatttttgaacagGAAGTGT
TACGAAGGACAAAAGCCTTCTATTAtttctaaaattattttcagaTATAG
TTTTCCTCCTCCGAAAGTTgcaaatcgaccaaaaattaGTCACAAAAGCC
TGGGTTCTTTCTTTACTTTAGCCTATGGATTTGGAGATTTCTTGGATTTT
TATATGTGTATGTGTAAAAGCTTCTTTTTACAATGGAGCAGAGATTTAAT
ACACTTTAAAAATTAAGGGTCCGGCCGGGATTAAGGGTCGAGTCGACact
gatgaaaatgatcaccTTTATAAGGAGTTTTGCCTTTTTTTAGGTGGTTT
CCAAAGTTACTGTTTAAACCCAATTAGGTACAAAGGTAATTTCCATCTAC
AAAAATGGCTGAGCTTTCTTACTTGACTTTCAAAATCTTTAGCTGTatgg
cccgggggggg
Run BLAST on NCBI

transcript from alignment at sc0000084:429983..430843

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008365 ID=TCONS_00008365|Name=TCONS_00008365|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at sc0000084:429983..430843 (Clytia hemisphaerica)
ccccccccgggccatACAGCTAAAGATTTTGAAAGTCAAGTAAGAAAGCT
CAGCCATTTTTGTAGATGGAAATTACCTTTGTACCTAATTGGGTTTAAAC
AGTAACTTTGGAAACCACCTAAAAAAAGGCAAAACTCCTTATAAAggtga
tcattttcatcagtGTCGACTCGACCCTTAATCCCGGCCGGACCCTTAAT
TTTTAAAGTGTATTAAATCTCTGCTCCATTGTAAAAAGAAGCTTTTACAC
ATACACATATAAAAATCCAAGAAATCTCCAAATCCATAGGCTAAAGTAAA
GAAAGAACCCAGGCTTTTGTGACtaatttttggtcgatttgcAACTTTCG
GAGGAGGAAAACTATAtctgaaaataattttagaaaTAATAGAAGGCTTT
TGTCCTTCGTAACACTTCctgttcaaaaattgaaaatcttgatttgGATT
TGGAGCCGACATATAGGCAGGTTTTAAAGAGCCttaaattcaaatttgta
ttccACTGAAAATAAACCTTTGACCTAGGTGACACGTGACATACGATGTT
GTTTTTCAAGTTCTTTATGAAATGGACGTCCGATAGACGTTAGATGGACG
GTTTTGTGCCAGCTAGGGAGAtcgatcaaaaaaatttcatattttcactt
ttcattttttatctacaaATACTTTGATTGAATAAATTTCCCGAGTATAA
AAAATTGCgaaataaaattttacattcatgacttaatgttttatacggaa
gcactcaaaatacacgttttttcttttattagaacccagtttataagaac
attgaggctgaaattcttcgaaaaattaagaacatcgtaagaacatgccc
agcctcagttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004694XLOC_004694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008365-exon-sc0000084-1491911889:429983..430843TCONS_00008365-exon-sc0000084-1491911889:429983..430843Clytia hemisphaericaexon
TCONS_00008365-exon-sc0000084-1510915933:429983..430843TCONS_00008365-exon-sc0000084-1510915933:429983..430843Clytia hemisphaericaexon
TCONS_00008365-exon-sc0000084-1575043694:429983..430843TCONS_00008365-exon-sc0000084-1575043694:429983..430843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:429983..430843 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0549586	0	0	0.185841	0.1726	0.0670145	0.840245	0.814772	0.67849	0.635124	2.03461	0.468374	0.738674	1.52548	0.927457	0.936823	1.02871	1.01924	1.43884	0.183044	1.67398	1.50806	0.692563	0.925079	0.175265	0.208757	0.603722	0.164359	5.36362	4.95202
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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