TCONS_00008394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008394
Unique NameTCONS_00008394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008394 ID=TCONS_00008394|Name=TCONS_00008394|organism=Clytia hemisphaerica|type=transcript|length=2590bp
TtcagaaattaaataaaaaataaaaactgaaaaataaaactgaTACACCA
AACAAAGTCATAATGGCATCGAACACtccgaaaattcaaaaacttgatGA
AGTGGTGGTCAATCGAATCGCAGCTGGTGAAGTTATCCAAAGGCCTGCCA
ACGCCATTAAAGAAATGATCGAAAACAGCCTCGACGCAAAATCCAAATCT
ATTCAGGTAACAGTCAAAGATGGTGGGTTAAAGTTGCTGCAGATACAGGA
TGATGGGTGCGGGATACGCAAAGAAGACATGCATATTGTTTGTGAGCGAT
TCACCACAAGTAAACTTGCTTCGTTCGATGATTTGAAATCCATAGCAACG
TACGGGTTTCGTGGTGAAGCATTGGCTAGCATCAGTCACGTGGCCCATTT
GACCATCACAACGAAGACGGGGGACTCGCCATGCGCTTTCAAAGCCAAAT
ATGAAGATGGCAAGATGGTGCCACTTCAAGTGGGAGGGAAAGTGGAAGCC
AAAGCATGCGCTGGTAACAAAGGTACTCAGATCACAGTGGAAGACCTCTT
TTACAACGTTGCTGTGCGTCGAAAAGCATTACGTAATACCAACGAGGAGC
ACGCCAAAATTGTTGACGTCATCAGTAAATACGCTATACATAATCCGTCT
GTCGGGTTTTCACTCAAGAAAGTCGGTAACAGTGTCGGAGATGTTCGGAC
GTCACCAAAATCCACCGTCATCGACAACATCAAGACAATCTATGGGCCGA
CTTTGTCGAAAGAGTTACTGGAAGTTACTCACGAGGATACTCAGTACGCT
TTCAAAATGCACGCTTTTGTATCAAACGCCAATTACTCCATAAAGAAATG
TACTCTGTTGCTGTTCATCAACCACCGACTTGTGGAGTCAACGGCGCTTC
GTAAGGCTCTTGATGCCGTGTATGTGAACTATCTACCCAAAGACAAACAC
CCTTTCATGTACATGAGTTTAGAACTAAATCCCATCAACTTAGATGTCAA
CGTCCACCCTACAAAACACGAAGTGAAGTTCCTCCATGAAGAAGCTATCA
TTGAATCTATCCAGAAGTGCGTGGAAACCAAATTGCTCGGCTCCAATGAA
TCCCGACAATATTACACACAGTCGTTGATACCGAAAATGTTGTCGGCTGG
TGTTGATTGTCCTGTTGCAGATATTGTTCAAGGTAACCAAAGCGATAAAA
ACAACAATGCGAATGAAGGAGAGAGCGAAAAGAAGAAACTGTACGCCCAT
CAGATGGTGCGAACGGACGCACGCGAACAAAAGATTGAAGCTTTCTTCCC
CTACAAAGCGCAAGTCAAAAGTCCAACACAATGTTCAAAAGTGACGGAAG
AAACGGTCAACCAAACTTCACATGTTAATAAAGAAAATGTCGAAACTGAT
GGAGCTAGTAATGCAACAATTCTAACAGTTGATAGTGAACTTCATGGAAA
TGAACACTCGAACACATCAAACCAAAATGGTATCCCTGATGACCAATCAG
GTGGTCACTTGACTGAAGTCAATGAACTACCACGTGAAGAACGGAAAGAA
AATGGTAGCGAAGGAGCAACAACGATCAACTTGCTCCAAGATGAAGAAGG
AGACGTCCAAATGAAAGATGTTGAACAAAACACAAGAAGAGGAGACGAGC
ATTCAAATAATACGCATCAGAAAAGACATGCTGCTGATGTAAAGCAACCC
GTTGCGAAATCGTCAAGCAAGATATCTTCAACAGCGTGTGATGAACGAAC
CATGAAATTGACCAGCATCCGAAACTTGAGACGTCAAATTGAAGATAATG
AACACTTAGGCGTGAAAAAGATTTTAGAGGAGCACAAATTTGTTGGCTGT
GTAAATAGGTCTTTAGCTTTGATGCAACACTTGACGCAACTCTATCTTGT
CAACgttcaaaatttaagtcaagAGCTTTTTTacgaaatcatcattttcc
GATTCGGAAATTTCGGATATTTAGAATTGTCAGAACCGGCCCCGATTTTT
GAACTTGTCCGGTTAGTTTTGGATACTCCGGAAAGCGGTTGGGAACCGGA
AGATGGCGAGAAAGACGAACTTGCGAAATACACTGTGGACTTGTTGAAGA
GTAAAGCTGATATGTTGATGGATTATTTCTCTGTTGAAATCAACGAACAA
GGAGAATTGACAGCAATACCTCTTCTGTTGAGTAACTATACACCGAATTG
GAATAAATTGCCCTTGCTGATGTTGCGGCTTGCTTCTGAGGTGGATTGGG
ACAACGAACAGCAATGTTTTCACGATTTCGCGATAGAGTTGAGTGATTTT
TATTCCACAGGAGGATCAAAACAACAAACAGAAGACGAGGATGAAGGAGA
ATGGAAGCATCAGATCGAACACCTCATTTTCCCTGCTCTAAGAAACACTT
TCATCCCTCCTAAACGTTTCTCTAATGATGGTTGCTTCTTAGAAGTCGCA
AACCTGCCTGACTTATACAAAGTCTTCGAAAGATGTTAGAATTAAAGAGT
TTCTTTATGATTTGGTTTTATGTTAACTTTGTGAAGTTATGAAGAAAATT
TCCCTAAGAAGTTCTTTCGTGTTCACCGCTTCGATTTTTA
Run BLAST on NCBI

protein sequence of TCONS_00008394-protein

>TCONS_00008394-protein ID=TCONS_00008394-protein|Name=TCONS_00008394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=808bp
MASNTPKIQKLDEVVVNRIAAGEVIQRPANAIKEMIENSLDAKSKSIQVT
VKDGGLKLLQIQDDGCGIRKEDMHIVCERFTTSKLASFDDLKSIATYGFR
GEALASISHVAHLTITTKTGDSPCAFKAKYEDGKMVPLQVGGKVEAKACA
GNKGTQITVEDLFYNVAVRRKALRNTNEEHAKIVDVISKYAIHNPSVGFS
LKKVGNSVGDVRTSPKSTVIDNIKTIYGPTLSKELLEVTHEDTQYAFKMH
AFVSNANYSIKKCTLLLFINHRLVESTALRKALDAVYVNYLPKDKHPFMY
MSLELNPINLDVNVHPTKHEVKFLHEEAIIESIQKCVETKLLGSNESRQY
YTQSLIPKMLSAGVDCPVADIVQGNQSDKNNNANEGESEKKKLYAHQMVR
TDAREQKIEAFFPYKAQVKSPTQCSKVTEETVNQTSHVNKENVETDGASN
ATILTVDSELHGNEHSNTSNQNGIPDDQSGGHLTEVNELPREERKENGSE
GATTINLLQDEEGDVQMKDVEQNTRRGDEHSNNTHQKRHAADVKQPVAKS
SSKISSTACDERTMKLTSIRNLRRQIEDNEHLGVKKILEEHKFVGCVNRS
LALMQHLTQLYLVNVQNLSQELFYEIIIFRFGNFGYLELSEPAPIFELVR
LVLDTPESGWEPEDGEKDELAKYTVDLLKSKADMLMDYFSVEINEQGELT
AIPLLLSNYTPNWNKLPLLMLRLASEVDWDNEQQCFHDFAIELSDFYSTG
GSKQQTEDEDEGEWKHQIEHLIFPALRNTFIPPKRFSNDGCFLEVANLPD
LYKVFERC
Run BLAST on NCBI

transcript from alignment at sc0000085:173451..178232+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008394 ID=TCONS_00008394|Name=TCONS_00008394|organism=Clytia hemisphaerica|type=transcript|length=4782bp|location=Sequence derived from alignment at sc0000085:173451..178232+ (Clytia hemisphaerica)
TtcagaaattaaataaaaaataaaaactgaaaaataaaactgaTACACCA
AACAAAGTCATAATGGCATCGAACACtccgaaaattcaaaaacttgatGA
AGTGGTGGTCAATCGAATCGCAGCTGGTGAAGTTATCCAAAGGCCTGCCA
ACGCCATTAAAGAAATGATCGAAAACAGCCTCGACGCAAAATCCAAATCT
ATTCAGGTATCAATCACAGTTCACAGACCCTCTTCTTATCTCATAATTGT
GTTTTCCATCCTAGATACTAACTTGCATGTTGGTTGGTATTCGAAATCTT
TGATCATGGAAGCATTTCATATTTTCTCATTCACAGGTAACAGTCAAAGA
TGGTGGGTTAAAGTTGCTGCAGATACAGGATGATGGGTGCGGGATACGCA
AAGAAGACATGCATATTGTTTGTGAGCGATTCACCACAAGTAAACTTGCT
TCGTTCGATGATTTGAAATCCATAGCAACGTACGGGTTTCGTGGTGAAGC
ATTGGCTAGCATCAGTCACGTGGCCCATTTGACCATCACAACGAAGACGG
GGGACTCGCCATGCGCTTTCAAAGCCAAATATGAAGATGGCAAGATGGTG
CCACTTCAAGTGGGAGGGAAAGTGGAAGCCAAAGCATGCGCTGGTAACAA
AGGTATGTCTCCATTCCCTTTTGTTGTGGTGAGATATATCTATAGTGAGA
TTAAAGTAAACTTTGATTTGTTACTCAGCTTGGAAAGTATTGTATTCGAT
TTCCTTGTTCTTTAAGGTACTCAGATCACAGTGGAAGACCTCTTTTACAA
CGTTGCTGTGCGTCGAAAAGCATTACGTAATACCAACGAGGAGCACGCCA
AAATTGTTGACGTCATCAGTAAATACGCTATACATAATCCGTCTGTCGGG
TTTTCACTCAAGAAAGTCGGTAACAGTGTCGGAGATGTTCGGACGTCACC
AAAATCCACCGTCATCGACAACATCAAGACAATCTATGGGCCGACTTTGT
CGAAAGAGTTACTGGAAGTTACTCACGAGGATACTCAGTACGCTTTCAAA
ATGCACGCTTTTGTATCAAACGCCAATTACTCCATAAAGAAATGTACTCT
GTTGCTGTTCATCAACCACCGACTTGTGGAGTCAACGGCGCTTCGTAAGG
CTCTTGATGCCGTGTATGTGAACTATCTACCCAAAGACAAACACCCTTTC
ATGTACATGAGTTTAGAACTAAATCCCATCAACTTAGATGTCAACGTCCA
CCCTACAAAACACGAAGTGAAGTTCCTCCATGAAGAAGCTATCATTGAAT
CTATCCAGAAGTGCGTGGAAACCAAATTGCTCGGCTCCAATGAATCCCGA
CAATATTACACACAGTCGTTGATACCGAAAATGTTGTCGGCTGGTGTTGA
TTGTCCTGTTGCAGGTTAAACTTTTTACTTATTTGGTTACTTGAGCGGAT
ACAGGCTGTTACAGAATTATGTTTGAATAATTCCCTTTCGTTTAGATATT
GTTCAAGGTAACCAAAGCGATAAAAACAACAATGCGAATGAAGGAGAGAG
CGAAAAGAAGAAACTGTACGCCCATCAGATGGTGCGAACGGACGCACGCG
AACAAAAGATTGANTGTTGTGGCGAGATATATCTATAGTGAGATTAAAGT
AAACTTTGATTTGTTACTCAGCTTGGAAAGTATTGTATTCGATTTCCTTG
TTCTTTAAGGTACTCAGATCACAGTGGAAGACCTCTTTTACAACGTTGCT
GTGCGTCGAAAAGCATTACGTAATACCAACGAGGAGCACGCCAAAATTGT
TGACGTCATCAGTAAATACGCTATACATAATCCGTCTGTCGGGTTTTCAC
TCAAGAAAGTCGGTAACAGTGTCGGAGATGTTCGGACGTCACCAAAATCC
ACCGTCATCGACAACATCAAGACAATCTATGGGCCGACTTTGTCGAAAGA
GTTACTGGAAGTTACTCACGAGGATACTCAGTACGCTTTCAAAATGCACG
CTTTTGTATCAAACGCCAATTACTCCATAAAGAAATGTACTCTGTTGCTG
TTCATCAACCACCGACTTGTGGAGTCAACGGCGCTTCGTAAGGCTCTTGA
TGCCGTGTATGTGAACTATCTACCCAAAGACAAACACCCTTTCATGTACA
TGAGTTTAGAACTAAATCCCATCAACTTAGATGTCAACGTCCACCCTACA
AAACACGAAGTGAAGTTCCTCCATGAAGAAGCTATCATTGAATCTATCCA
GAAGTGCGTGGAAACCAAATTGCTCGGCTCCAATGAATCCCGACAATATT
ACACACAGTCGTTGATACCGAAAATGTTGTCGGCTGGTGTTGATTGTCCT
GTTGCAGGTTAAACTTTTTACTTATTTGGTTACTTGAGCGGATACAGGCT
GTTACAGAATTATGTTTGAATAATTCCCTTTCGTTTAGATATTGTTCAAG
GTAACCAAAGCGATAAAAACAACAATGCGAATGAAGGAGAGAGCGAAAAG
AAGAAACTGTACGCCCATCAGATGGTGCGAACGGACGCACGCGAACAAAA
GATTGAAGCTTTCTTCCCCTACAAAGCGCAAGTCAAAAGTCCAACACAAT
GTTCAAAAGTGACGGAAGAAACGGTCAACCAAACTTCACATGTTAATAAA
GAAAATGTCGAAACTGATGGAGCTAGTAATGCAACAATTCTAACAGTTGA
TAGGTATTTACTCACTGAATGAACAATTCTCCTGAAAAGTGTCAGTTCCT
CGAGAACAGTTAAGGTTGATATCTATTCATACTTGAATATTCGAATTACT
CGCTCGTACATTACGTTATCAATTTCAATTCCGTATCGGTTTTCGGAATG
AATGCCAGTGTCAGTGATTAACTAGTTAGTCACTTTCTTACCCTTCTTTT
TCAAATAGTGAACTTCATGGAAATGAACACTCGAACACATCAAACCAAAA
TGGTATCCCTGATGACCAATCAGGTGGTCACTTGACTGAAGTCAATGAAC
TACCACGTGAAGAACGGAAAGAAAATGGTAGCGAAGGAGCAACAACGATC
AACTTGCTCCAAGATGAAGAAGGAGACGTCCAAATGAAAGATGTTGAACA
AAACACAAGAAGAGGAGACGAGCATTCAAATAATACGCATCAGAAAAGAC
ATGCTGCTGATGGTCTatatactttcattttcaatttctaaacaaCTGTT
TTGCTNATACGCATCAGAAAAGACCTGCTGCTGATGGTCTatatactttc
attttcaatttctaaacaactgttttgctattttttacaaattttcaaaa
aaatctcaacTAGTTGTTCTCATCGCTAACTCTTTTTTTGAATGAACGAA
TTCTTTACCTTTTTTAGTAAAGCAACCCGTTGCGAAATCGTCAAGCAAGA
TATCTTCAACAGCGTGTGATGAACGAACCATGAAATTGACCAGCATCCGA
AACTTGAGACGTCAAATTGAAGATAATGAACACTTAGGCGTGAAAAAGAT
TTTAGAGGAGCACAAATTTGTTGGCTGTGTAAATAGGTCTTTAGCTTTGA
TGCAACACTTGACGCAACTCTATCTTGTCAACgttcaaaatttaagtcaa
gAGCTTTTTTacgaaatcatcattttccGATTCGGAAATTTCGGATATTT
AGAATTGTCAGAACCGGCCCCGATTTTTGAACTTGTCCGGTTAGTTTTGG
ATACTCCGGAAAGCGGTTGGGAACCGGAAGATGGCGAGAAAGACGAACTT
GCGAAATACACTGTGGACTTGTTGAAGAGTAAAGCTGATATGTTGATGGA
TTATTTCTCTGTTGAAATCAACGAACAAGGAGAATTGACAGCAATACCTC
TTCTGTTGAGTAACTATACACCGAATTGGAATAAATTGCCCTTGCTGATG
TTGCGGCTTGCTTCTGAGGTTTGTTTGTTAAAATGGTTTATTACACTTTC
AAAGGGAGGTATTTTAAGCAAGAAGTAATTTTCGCGAGCAACGTGAATTC
TAAGAGAAAGTAAATATGTTCTTCTTACTTATGAAAAATATGCTTGGAAC
TAAtgtctatttttgaaaatcgtgaacagactttttGCAATACAGCgatt
tttctatcaattttgGCGATGAATAACGAGTTCTCGTTAAGGTAAATCCC
TGAAGTTTCCACTCTGATGACATAAAACTTTCTTTCAGCCGAGATAAATA
TTAGTTTAGTTTAGACAAAATCAAAACCTTGCCCGCAACAACATTTTTAA
CGGAATAACCTTTTCGACGGCATGTTTTTTGGAACAAAGTTGTTCAAATA
CTACATGATCTTCCTCCTTGAGGAGTAAAACATTCTACATTTGATCAGCA
ATCCTTCGGTTGAGTGAAACTTACAGTTATCTACCTTTTACTTGTTGACA
AATAAATGTATCATTTTGATCTTCCTCCTTAGGTGGATTGGGACAACGAA
CAGCAATGTTTTCACGATTTCGCGATAGAGTTGAGTGATTTTTATTCCAC
AGGAGGATCAAAACAACAAACAGAAGACGAGGATGAAGGAGAATGGAAGC
ATCAGATCGAACACCTCATTTTCCCTGCTCTAAGAAACACTTTCATCCCT
CCTAAACGTTTCTCTAATGATGGTTGCTTCTTAGAAGTCGCAAACCTGCC
TGACTTATACAAAGTCTTCGAAAGATGTTAGAATTAAAGAGTTTCTTTAT
GATTTGGTTTTATGTTAACTTTGTGAAGTTATGAAGAAAATTTCCCTAAG
AAGTTCTTTCGTGTTCACCGCTTCGATTTTTA

Coding sequence (CDS) from alignment at sc0000085:173451..178232+

>TCONS_00008394 ID=TCONS_00008394|Name=TCONS_00008394|organism=Clytia hemisphaerica|type=CDS|length=2427bp|location=Sequence derived from alignment at sc0000085:173451..178232+ (Clytia hemisphaerica)
ATGGCATCGAACACtccgaaaattcaaaaacttgatGAAGTGGTGGTCAA
TCGAATCGCAGCTGGTGAAGTTATCCAAAGGCCTGCCAACGCCATTAAAG
AAATGATCGAAAACAGCCTCGACGCAAAATCCAAATCTATTCAGGTAACA
GTCAAAGATGGTGGGTTAAAGTTGCTGCAGATACAGGATGATGGGTGCGG
GATACGCAAAGAAGACATGCATATTGTTTGTGAGCGATTCACCACAAGTA
AACTTGCTTCGTTCGATGATTTGAAATCCATAGCAACGTACGGGTTTCGT
GGTGAAGCATTGGCTAGCATCAGTCACGTGGCCCATTTGACCATCACAAC
GAAGACGGGGGACTCGCCATGCGCTTTCAAAGCCAAATATGAAGATGGCA
AGATGGTGCCACTTCAAGTGGGAGGGAAAGTGGAAGCCAAAGCATGCGCT
GGTAACAAAGGTACTCAGATCACAGTGGAAGACCTCTTTTACAACGTTGC
TGTGCGTCGAAAAGCATTACGTAATACCAACGAGGAGCACGCCAAAATTG
TTGACGTCATCAGTAAATACGCTATACATAATCCGTCTGTCGGGTTTTCA
CTCAAGAAAGTCGGTAACAGTGTCGGAGATGTTCGGACGTCACCAAAATC
CACCGTCATCGACAACATCAAGACAATCTATGGGCCGACTTTGTCGAAAG
AGTTACTGGAAGTTACTCACGAGGATACTCAGTACGCTTTCAAAATGCAC
GCTTTTGTATCAAACGCCAATTACTCCATAAAGAAATGTACTCTGTTGCT
GTTCATCAACCACCGACTTGTGGAGTCAACGGCGCTTCGTAAGGCTCTTG
ATGCCGTGTATGTGAACTATCTACCCAAAGACAAACACCCTTTCATGTAC
ATGAGTTTAGAACTAAATCCCATCAACTTAGATGTCAACGTCCACCCTAC
AAAACACGAAGTGAAGTTCCTCCATGAAGAAGCTATCATTGAATCTATCC
AGAAGTGCGTGGAAACCAAATTGCTCGGCTCCAATGAATCCCGACAATAT
TACACACAGTCGTTGATACCGAAAATGTTGTCGGCTGGTGTTGATTGTCC
TGTTGCAGATATTGTTCAAGGTAACCAAAGCGATAAAAACAACAATGCGA
ATGAAGGAGAGAGCGAAAAGAAGAAACTGTACGCCCATCAGATGGTGCGA
ACGGACGCACGCGAACAAAAGATTGAAGCTTTCTTCCCCTACAAAGCGCA
AGTCAAAAGTCCAACACAATGTTCAAAAGTGACGGAAGAAACGGTCAACC
AAACTTCACATGTTAATAAAGAAAATGTCGAAACTGATGGAGCTAGTAAT
GCAACAATTCTAACAGTTGATAGTGAACTTCATGGAAATGAACACTCGAA
CACATCAAACCAAAATGGTATCCCTGATGACCAATCAGGTGGTCACTTGA
CTGAAGTCAATGAACTACCACGTGAAGAACGGAAAGAAAATGGTAGCGAA
GGAGCAACAACGATCAACTTGCTCCAAGATGAAGAAGGAGACGTCCAAAT
GAAAGATGTTGAACAAAACACAAGAAGAGGAGACGAGCATTCAAATAATA
CGCATCAGAAAAGACATGCTGCTGATGTAAAGCAACCCGTTGCGAAATCG
TCAAGCAAGATATCTTCAACAGCGTGTGATGAACGAACCATGAAATTGAC
CAGCATCCGAAACTTGAGACGTCAAATTGAAGATAATGAACACTTAGGCG
TGAAAAAGATTTTAGAGGAGCACAAATTTGTTGGCTGTGTAAATAGGTCT
TTAGCTTTGATGCAACACTTGACGCAACTCTATCTTGTCAACgttcaaaa
tttaagtcaagAGCTTTTTTacgaaatcatcattttccGATTCGGAAATT
TCGGATATTTAGAATTGTCAGAACCGGCCCCGATTTTTGAACTTGTCCGG
TTAGTTTTGGATACTCCGGAAAGCGGTTGGGAACCGGAAGATGGCGAGAA
AGACGAACTTGCGAAATACACTGTGGACTTGTTGAAGAGTAAAGCTGATA
TGTTGATGGATTATTTCTCTGTTGAAATCAACGAACAAGGAGAATTGACA
GCAATACCTCTTCTGTTGAGTAACTATACACCGAATTGGAATAAATTGCC
CTTGCTGATGTTGCGGCTTGCTTCTGAGGTGGATTGGGACAACGAACAGC
AATGTTTTCACGATTTCGCGATAGAGTTGAGTGATTTTTATTCCACAGGA
GGATCAAAACAACAAACAGAAGACGAGGATGAAGGAGAATGGAAGCATCA
GATCGAACACCTCATTTTCCCTGCTCTAAGAAACACTTTCATCCCTCCTA
AACGTTTCTCTAATGATGGTTGCTTCTTAGAAGTCGCAAACCTGCCTGAC
TTATACAAAGTCTTCGAAAGATGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004712XLOC_004712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008394-exon-sc0000085-1491911889:173451..173656TCONS_00008394-exon-sc0000085-1491911889:173451..173656Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1510915933:173451..173656TCONS_00008394-exon-sc0000085-1510915933:173451..173656Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1575043694:173451..173656TCONS_00008394-exon-sc0000085-1575043694:173451..173656Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1491911889:173787..174102TCONS_00008394-exon-sc0000085-1491911889:173787..174102Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1510915933:173787..174102TCONS_00008394-exon-sc0000085-1510915933:173787..174102Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1575043694:173787..174102TCONS_00008394-exon-sc0000085-1575043694:173787..174102Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1491911889:174217..174864TCONS_00008394-exon-sc0000085-1491911889:174217..174864Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1510915933:174217..174864TCONS_00008394-exon-sc0000085-1510915933:174217..174864Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1575043694:174217..174864TCONS_00008394-exon-sc0000085-1575043694:174217..174864Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1491911889:174946..174957TCONS_00008394-exon-sc0000085-1491911889:174946..174957Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1510915933:174946..174957TCONS_00008394-exon-sc0000085-1510915933:174946..174957Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1575043694:174946..174957TCONS_00008394-exon-sc0000085-1575043694:174946..174957Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1491911889:175901..176153TCONS_00008394-exon-sc0000085-1491911889:175901..176153Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1510915933:175901..176153TCONS_00008394-exon-sc0000085-1510915933:175901..176153Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1575043694:175901..176153TCONS_00008394-exon-sc0000085-1575043694:175901..176153Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1491911889:176359..176612TCONS_00008394-exon-sc0000085-1491911889:176359..176612Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1510915933:176359..176612TCONS_00008394-exon-sc0000085-1510915933:176359..176612Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1575043694:176359..176612TCONS_00008394-exon-sc0000085-1575043694:176359..176612Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1491911889:176818..177368TCONS_00008394-exon-sc0000085-1491911889:176818..177368Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1510915933:176818..177368TCONS_00008394-exon-sc0000085-1510915933:176818..177368Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1575043694:176818..177368TCONS_00008394-exon-sc0000085-1575043694:176818..177368Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1491911889:177883..178232TCONS_00008394-exon-sc0000085-1491911889:177883..178232Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1510915933:177883..178232TCONS_00008394-exon-sc0000085-1510915933:177883..178232Clytia hemisphaericaexon
TCONS_00008394-exon-sc0000085-1575043694:177883..178232TCONS_00008394-exon-sc0000085-1575043694:177883..178232Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008394-proteinTCONS_00008394-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:173451..178232 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1225e-09	5.56443e-05	3.01397e-07	7.6349e-07	1.02122e-05	0	0.865885	2.19793e-05	1.58077e-07	0	0	6.44075e-07	6.88353e-07	0.00970204	0.00637741	3.1576e-08	0.0511923	3.76488e-08	3.44235e-06	0	0	7.60939e-05	1.12318e-08	5.3735e-07	0	4.93367e-05	2.45223e-07	1.68677e-06	0.00173058	3.61077e-05
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013507DNA_mismatch_repair_C
IPR002099DNA_mismatch_repair_fam
IPR003594HATPase_C
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR032189Mlh1_C
IPR014762DNA_mismatch_repair_CS
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Vocabulary: Molecular Function
TermDefinition
GO:0030983mismatched DNA binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
Blast
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BLAST of TCONS_00008394 vs. Swiss-Prot (Human)
Match: MLH1 (DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1)

HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 412/815 (50.55%), Postives = 543/815 (66.63%), Query Frame = 3 
Query:   84 IQKLDEVVVNRIAAGEVIQRPANAIKEMIENSLDAKSKSIQVTVKDGGLKLLQIQDDGCGIRKEDMHIVCERFTTSKLASFDDLKSIATYGFRGEALASISHVAHLTITTKTGDSPCAFKAKYEDGKMVPLQVGGKVEAKACAGNKGTQITVEDLFYNVAVRRKALRNTNEEHAKIVDVISKYAIHNPSVGFSLKKVGNSVGDVRTSPKSTVIDNIKTIYGPTLSKELLEVTHEDTQYAFKMHAFVSNANYSIKKCTLLLFINHRLVESTALRKALDAVYVNYLPKDKHPFMYMSLELNPINLDVNVHPTKHEVKFLHEEAIIESIQKCVETKLLGSNESRQYYTQSLIPKMLSAGVDCPVADIVQGNQSDKNNNANEGESEKKKLYAHQMVRTDAREQKIEAFF-PYKAQVKSPTQCSKVTEETVNQTSHVNKENVETDGASNATILTVDSELHGNEHSNTSNQNGIPDDQSGGHLTEVNELPREERKENGSEGATTINLLQDEEGDVQMKDVEQNTRRGDEHSNNTHQKRHAADVKQPVAKSSSKISSTACD--ERTMKLTSIRNLRRQIEDNEHLGVKKILEEHKFVGCVNRSLALMQHLTQLYLVNVQNLSQELFYEIIIFRFGNFGYLELSEPAPIFELVRLVLDTPESGWEPEDGEKDELAKYTVDLLKSKADMLMDYFSVEINEQGELTAIPLLLSNYTPNWNKLPLLMLRLASEVDWDNEQQCFHDFAIELSDFYST-----------GGSKQQTEDEDEGEWKHQIEHLIFPALRNTFIPPKRFSNDGCFLEVANLPDLYKVFERC 2486
            I++LDE VVNRIAAGEVIQRPANAIKEMIEN LDAKS SIQV VK+GGLKL+QIQD+G GIRKED+ IVCERFTTSKL SF+DL SI+TYGFRGEALASISHVAH+TITTKT D  CA++A Y DGK+       K   K CAGN+GTQITVEDLFYN+A RRKAL+N +EE+ KI++V+ +Y++HN  + FS+KK G +V DVRT P ++ +DNI++I+G  +S+EL+E+  ED   AFKM+ ++SNANYS+KKC  LLFINHRLVEST+LRKA++ VY  YLPK+ HPF+Y+SLE++P N+DVNVHPTKHEV FLHEE+I+E +Q+ +E+KLLGSN SR Y+TQ+L+P     G+  P  ++V+   S  +++ +       K+YAHQMVRTD+REQK++AF  P    + S  Q + VTE+  + +S   ++  E                                        E+ ELP           A      Q  EGD      E + +RG   SN   + R  +DV+  V   S K  + AC    R + LTS+ +L+ +I +  H  ++++L  H FVGCVN   AL QH T+LYL+N   LS+ELFY+I+I+ F NFG L LSEPAP+F+L  L LD+PESGW  EDG K+ LA+Y V+ LK KA+ML DYFS+EI+E+G L  +PLL+ NY P    LP+ +LRLA+EV+WD E++CF   + E + FYS             G + +        WK  +EH+++ ALR+  +PPK F+ DG  L++ANLPDLYKVFERC
Sbjct:    8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKL-------KAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLP-----GLAGPSGEMVKSTTSLTSSSTS---GSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQ-AIVTEDKTDISSGRARQQDE----------------------------------------EMLELPAP---------AEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHREDSDVEM-VEDDSRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRLATEVNWDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIVYKALRSHILPPKHFTEDGNILQLANLPDLYKVFERC 756
The following BLAST results are available for this feature:
BLAST of TCONS_00008394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MLH10.000e+050.55DNA mismatch repair protein Mlh1 OS=Homo sapiens G... [more]
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